Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Forward (+)

1263479 .. 1267038

Gene Structure 3560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1015500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGCCCGTGCAAGCTCTGGTGGCGAACATCCAAGGGCTTTCGAGCTCAGGCGACATCCTGCACCTTCACGCCCTTCTGAAGCAAGCGCAGGAGTTGCTCTACGCCGAGTCGACTCGGTTGCTTCCCGTTCTCGACCAGCTCGACCCTGCCAAGCACTCTCTCGGATACCTCTACATTCTGGAGGCATGCTCAACTGGTTCGATTTCAAAGGAGCAGGCGAGTGCGTTGGTCTTGCCCATTGCCAGATTTATCAATTCCTGTGCTGCAGAGCAGATTCGTTTGCAGCCTGATAAATTCATATCTGTTTGCAAGAGGTTCAAAGATCAAGTTATGCTGCTTGAAGCACCATTGCGAGGCGTGGCACCGATGCTGACAGCCATTCGGAAAATTCAGGCCTCCTCGGAACACTTGACTTCTTTGCATCCGGAGTTTCTTCTTCTTTGTTTGTTGTCAAAATCCTATAAAGCTGGATATTCTATTTTAGATGATGACATATTTGAGGTTGATCAGCCAAGGGATCTTTTTCTCTATTGCTATTACGGGGGGATGATATGCATAGGACAAAAGCGTTTTCGCAAAGCGTTGGAGCTTCTTCACAATGTTGTAACGTCTCCAATGACTGTTGTTAATGCTATAGCTGTCGAAGCGTACAAAAAGCATATATTGGTTTCACTCATTCACAATTGGAATTTCTCTACCAGTCTTCCTAAATACACCTCTTCAGTAGCTCAGAGGAATCTAAAGAACTTTTGTCAGCCCTACATTGAATTTGCAAACTGCTATGTCAGTGGAAAAATTGTAGATTTGGAGGCATTGGTTGACAAATACAGGGAAAAGTATGAAAATGACAACAATCTTGGACTGGTGAAGCAGGTTATATCTTCCATGTATAAGCGAAACATTCAGAGACTGACTCAGACATACTTGACTCTTTCCCTTCAAGACATAGCCAACAGCGTTCAACTAAACAGCGCTAAGGAAGCAGAAATGCATGTGCTACGAATGATTGAAGATGGTGAGATATTCGCAACAATTAACCAGAAGGATGGAATGGTTAGATTTCTTGAGGATCCTGAGCAATATAAAACCTGTCACATGATTGAACATATTGACTCATCAATACAGAGGATAATGGCACTATCAAGGAAGCTGACTGCTATTGATGAAACCATCACATCCGATCCTTTGTTCCTGTCAAAGACTGGAAGAGAGCGGCATAGATTTGACTTCGATGATTTTGATGGCGTCCCCCAGAAGTTTAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

424

Amino Acids

48.07

Weight (kDa)

6.47

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COP9_hel_rpt	PF22788	19 - 243	3.5e-65	COP9 signalosome complex subunit 3, N-terminal helical repeats
PCI	PF01399	276 - 355	4.8e-16	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	865
AccB1I	GGYRCC	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	1216
AccI	GTMKAC	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	1 cut(s)	1216
AclWI	GGATC	4 cut(s)	528, 1067, 1080, 1178
AcsI	RAATTY	4 cut(s)	296, 390, 691, 770
AcuI	CTGAAG	2 cut(s)	101, 708
AcyI	GRCGYC	1 cut(s)	1248
AfaI	GTAC	1 cut(s)	653
AfeI	AGCGCT	1 cut(s)	976
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	8 cut(s)	210, 322, 344, 770, 944, 965, 1013, 1106
AluBI	AGCT	8 cut(s)	17, 48, 142, 470, 592, 641, 731, 1153
AluI	AGCT	8 cut(s)	17, 48, 142, 470, 592, 641, 731, 1153
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	618, 904
AlwI	GGATC	4 cut(s)	528, 1067, 1080, 1178
AlwNI	CAGNNNCTG	1 cut(s)	913
Aor13HI	TCCGGA	1 cut(s)	427
Aor51HI	AGCGCT	1 cut(s)	976
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	3 cut(s)	266, 286, 337
ApoI	RAATTY	4 cut(s)	296, 390, 691, 770
AspLEI	GCGC	2 cut(s)	91, 977
AsuHPI	GGTGA	2 cut(s)	880, 1031
BamHI	GGATCC	1 cut(s)	1072
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	2 cut(s)	9, 50
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	3 cut(s)	253, 298, 324
BccI	CCATC	4 cut(s)	1010, 1043, 1181, 1238
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciVI	GTATCC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	618, 904
BfmI	CTRYAG	2 cut(s)	267, 636
BfoI	RGCGCY	1 cut(s)	978
BfuAI	ACCTGC	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	4 cut(s)	267, 287, 338, 1217
BlsI	GCNGC	4 cut(s)	268, 288, 339, 1218
BmiI	GGNNCC	3 cut(s)	6, 366, 1074
BmsI	GCATC	2 cut(s)	360, 433
BpiI	GAAGAC	1 cut(s)	698
BplI	GAGNNNNNCTC	4 cut(s)	176, 208, 901, 933
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	3 cut(s)	49, 978, 1077
BpuEI	CTTGAG	1 cut(s)	1088
BsaHI	GRCGYC	1 cut(s)	1248
BsaJI	CCNNGG	3 cut(s)	34, 402, 515
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	4 cut(s)	202, 702, 870, 1210
Bse3DI	GCAATG	2 cut(s)	240, 350
BseAI	TCCGGA	1 cut(s)	427
BseDI	CCNNGG	3 cut(s)	34, 402, 515
BseGI	GGATG	6 cut(s)	30, 57, 424, 555, 1054, 1178
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	2 cut(s)	240, 350
BseMII	CTCAG	4 cut(s)	63, 746, 932, 1068
BseNI	ACTGG	4 cut(s)	202, 702, 870, 1210
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	3 cut(s)	253, 298, 324
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	398
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	1235
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	618, 904
BsmBI	CGTCTC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	1235
BsnI	GGCC	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	9, 50
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	325, 508, 520, 1072, 1183
BspACI	CCGC	1 cut(s)	1216
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	4 cut(s)	62, 745, 931, 1069
BspEI	TCCGGA	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	6, 366, 1074
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	865
BspPI	GGATC	4 cut(s)	528, 1067, 1080, 1178
BspT107I	GGYRCC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	1216
BsrDI	GCAATG	2 cut(s)	240, 350
BsrI	ACTGG	4 cut(s)	202, 702, 870, 1210
BssECI	CCNNGG	3 cut(s)	34, 402, 515
BssMI	GATC	5 cut(s)	325, 508, 520, 1072, 1183
BssNI	GRCGYC	1 cut(s)	1248
BssT1I	CCWWGG	2 cut(s)	34, 515
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	2 cut(s)	727, 1204
BstACI	GRCGYC	1 cut(s)	1248
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	15, 87, 190, 219
BstDEI	CTNAG	5 cut(s)	49, 732, 918, 978, 1077
BstF5I	GGATG	6 cut(s)	30, 57, 424, 555, 1054, 1178
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	2 cut(s)	91, 977
BstKTI	GATC	5 cut(s)	328, 511, 523, 1075, 1186
BstMAI	GTCTC	2 cut(s)	618, 904
BstMBI	GATC	5 cut(s)	325, 508, 520, 1072, 1183
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 97, 647, 983
BstNSI	RCATGY	2 cut(s)	192, 998
BstSFI	CTRYAG	2 cut(s)	267, 636
BstV1I	GCAGC	3 cut(s)	253, 298, 324
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	2 cut(s)	520, 1072
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	2 cut(s)	520, 1072
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	6 cut(s)	30, 57, 424, 555, 1054, 1178
BtsIMutI	CAGTG	1 cut(s)	796
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	4 cut(s)	15, 87, 190, 219
CaiI	CAGNNNCTG	1 cut(s)	913
CfoI	GCGC	2 cut(s)	91, 977
CseI	GACGC	1 cut(s)	1237
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	4 cut(s)	189, 889, 995, 1099
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	5 cut(s)	49, 732, 918, 978, 1077
DpnI	GATC	5 cut(s)	327, 510, 522, 1074, 1185
DpnII	GATC	5 cut(s)	325, 508, 520, 1072, 1183
Eam1104I	CTCTTC	2 cut(s)	727, 1204
EarI	CTCTTC	2 cut(s)	727, 1204
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	34, 515
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	2 cut(s)	9, 50
Eco47III	AGCGCT	1 cut(s)	976
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	101, 708
EcoICRI	GAGCTC	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	34, 515
EcoT22I	ATGCAT	2 cut(s)	560, 996
EcoT38I	GRGCYC	2 cut(s)	9, 50
ErhI	CCWWGG	2 cut(s)	34, 515
Esp3I	CGTCTC	1 cut(s)	618
FaeI	CATG	4 cut(s)	192, 892, 998, 1102
FaqI	GGGAC	1 cut(s)	1235
FatI	CATG	4 cut(s)	188, 888, 994, 1098
FauNDI	CATATG	1 cut(s)	1268
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	4 cut(s)	267, 287, 338, 1217
FokI	GGATG	6 cut(s)	17, 44, 411, 562, 1061, 1165
FriOI	GRGCYC	2 cut(s)	9, 50
Fsp4HI	GCNGC	4 cut(s)	267, 287, 338, 1217
GlaI	GCGC	2 cut(s)	90, 976
GluI	GCNGC	4 cut(s)	267, 287, 338, 1217
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	428
HgaI	GACGC	1 cut(s)	1237
HhaI	GCGC	2 cut(s)	91, 977
Hin1I	GRCGYC	1 cut(s)	1248
Hin1II	CATG	4 cut(s)	192, 892, 998, 1102
Hin6I	GCGC	2 cut(s)	89, 975
HinP1I	GCGC	2 cut(s)	89, 975
HincII	GTYRAC	2 cut(s)	114, 823
HindII	GTYRAC	2 cut(s)	114, 823
HinfI	GANTC	7 cut(s)	110, 115, 277, 739, 916, 931, 1115
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	880, 1031
Hpy166II	GTNNAC	2 cut(s)	114, 823
Hpy188I	TCNGA	8 cut(s)	81, 167, 387, 406, 735, 909, 921, 1183
Hpy188III	TCNNGA	6 cut(s)	134, 182, 428, 944, 1067, 1076
Hpy8I	GTNNAC	2 cut(s)	114, 823
HpyAV	CCTTC	4 cut(s)	77, 86, 950, 1039
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	9 cut(s)	13, 64, 269, 286, 312, 424, 558, 776, 994
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 97, 647, 983
HpyF3I	CTNAG	5 cut(s)	49, 732, 918, 978, 1077
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	1 cut(s)	1248
Hsp92II	CATG	4 cut(s)	192, 892, 998, 1102
HspAI	GCGC	2 cut(s)	89, 975
Kpn2I	TCCGGA	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	325, 508, 520, 1072, 1183
LmnI	GCTCC	3 cut(s)	4, 214, 589
Lsp1109I	GCAGC	3 cut(s)	253, 298, 324
LweI	GCATC	2 cut(s)	360, 433
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	2 cut(s)	607, 1094
MalI	GATC	5 cut(s)	327, 510, 522, 1074, 1185
MbiI	CCGCTC	1 cut(s)	1216
MboI	GATC	5 cut(s)	325, 508, 520, 1072, 1183
MboII	GAAGA	8 cut(s)	428, 431, 587, 698, 714, 876, 1025, 1221
MfeI	CAATTG	1 cut(s)	685
MflI	RGATCY	2 cut(s)	520, 1072
MhlI	GDGCHC	2 cut(s)	9, 50
MluCI	AATT	8 cut(s)	256, 296, 390, 685, 691, 770, 798, 1035
MlyI	GAGTC	5 cut(s)	109, 119, 910, 925, 1109
MmeI	TCCRAC	1 cut(s)	567
Mph1103I	ATGCAT	2 cut(s)	560, 996
MroI	TCCGGA	1 cut(s)	427
MseI	TTAA	3 cut(s)	630, 1038, 1263
MspI	CCGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	685
MwoI	GCNNNNNNNGC	4 cut(s)	23, 97, 647, 983
NdeI	CATATG	1 cut(s)	1268
NdeII	GATC	5 cut(s)	325, 508, 520, 1072, 1183
NlaIII	CATG	4 cut(s)	192, 892, 998, 1102
NlaIV	GGNNCC	3 cut(s)	6, 366, 1074
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	1094
NsiI	ATGCAT	2 cut(s)	560, 996
NspI	RCATGY	2 cut(s)	192, 998
PaeI	GCATGC	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	277, 739
PkrI	GCNGC	4 cut(s)	268, 288, 339, 1218
PleI	GAGTC	5 cut(s)	109, 118, 910, 925, 1109
PpsI	GAGTC	5 cut(s)	109, 118, 910, 925, 1109
Psp124BI	GAGCTC	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	6, 366, 1074
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	913
PsuI	RGATCY	2 cut(s)	520, 1072
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
SacI	GAGCTC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	630, 1038, 1263
SatI	GCNGC	4 cut(s)	267, 287, 338, 1217
Sau3AI	GATC	5 cut(s)	325, 508, 520, 1072, 1183
SchI	GAGTC	5 cut(s)	109, 119, 910, 925, 1109
SduI	GDGCHC	2 cut(s)	9, 50
SfaNI	GCATC	2 cut(s)	360, 433
SfcI	CTRYAG	2 cut(s)	267, 636
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	8 cut(s)	256, 296, 390, 685, 691, 770, 798, 1035
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	1 cut(s)	1216
SstI	GAGCTC	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	398
StyI	CCWWGG	2 cut(s)	34, 515
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	7 cut(s)	44, 113, 135, 144, 203, 645, 1233
TasI	AATT	8 cut(s)	256, 296, 390, 685, 691, 770, 798, 1035
TauI	GCSGC	1 cut(s)	1219
TfiI	GAWTC	2 cut(s)	277, 739
Tru1I	TTAA	3 cut(s)	630, 1038, 1263
Tru9I	TTAA	3 cut(s)	630, 1038, 1263
TscAI	CASTG	1 cut(s)	796
TseFI	GTSAC	1 cut(s)	1094
TseI	GCWGC	3 cut(s)	266, 286, 337
Tsp45I	GTSAC	1 cut(s)	1094
TspDTI	ATGAA	3 cut(s)	289, 858, 1182
TspRI	CASTG	1 cut(s)	796
XapI	RAATTY	4 cut(s)	296, 390, 691, 770
XceI	RCATGY	2 cut(s)	192, 998
XmiI	GTMKAC	1 cut(s)	113
Zsp2I	ATGCAT	2 cut(s)	560, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.