Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000313.1

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Forward (+)

19227 .. 23074

Gene Structure 3848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000313.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgattgtgaataatgtttgtagtgtcgggttcattggtttaagatttaacctagttgctgcctttggaaaatcggttgaaattgactacttacaaggggagcaagctagtgcggtgctgttgcccactgccagatttatcaattcatgtgataaggagcaaattcaattggcacctgagaaattcgtaagtgtttgcaggaggttcaaagattttgttatgcagcttgaagccccattgagaggagtggcaccaatgttgacagcaattcggaaaattcagagctcctcggaacatttgacttccttgcatccagagtttcttgttctctgtttgttgtcaaaaagctataaagctggattgtcaattttggatgaagacatttttgaggttgatcagccaaaagatctttttctctattgctattacgggggcatgatatgtataggacaaaagagttttcgcaaagcgttggagcttttacacaatgttgtaacagctccaatgtcagtcattaatgcaatagctgttgaagcatacaaaaagtatatattggtttcactaattcacaatggacagttctctaccagtctccctaaatacacctcatctgtagctcagaggaatctgaagaacttttgtcagccctacatagaattggcaaccagctatagcactggtaaaattgctgagtttgagacagtggcccagaaacacagggagaaatttgataatgacaacaatcttggactggtgaagcaggctatatcttccatgtataagcgcaacattcagagactgactcagacatacttgactctctccctccaagatatagccaacagtgttcagttaaacagtgctaaggaagctgaaatgcatgtgctacaaatgatccaagatggtgagatatttgcaacaattaaccagaaggatggaatggttagctttcttgaggatcctgaacagtataaaacctgtcagatgattgaacatattgactcatcaatacaaaggataatggcgctttcgaggaagctgactactatgaacgagaacatctcttgtgatcctatgtacctagcaaaggttgggagagagcggcaacgatttgactttgatgattttgatcctgttccacagaggtttaatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

385

Amino Acids

43.7

Weight (kDa)

6.67

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	172, 250
AccBSI	CCGCTC	1 cut(s)	1102
AciI	CCGC	2 cut(s)	113, 1102
AclWI	GGATC	5 cut(s)	889, 953, 966, 1064, 1124
AcsI	RAATTY	4 cut(s)	162, 182, 276, 725
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	1 cut(s)	1079
AfiI	CCNNNNNNNGG	2 cut(s)	242, 1087
AgsI	TTSAA	6 cut(s)	80, 167, 208, 230, 533, 992
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	3 cut(s)	596, 692, 790
AlwI	GGATC	5 cut(s)	889, 953, 966, 1064, 1124
AlwNI	CAGNNNCTG	1 cut(s)	799
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	59, 223
ApoI	RAATTY	4 cut(s)	162, 182, 276, 725
AseI	ATTAAT	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	786, 1027
AspS9I	GGNCC	1 cut(s)	706
AsuHPI	GGTGA	2 cut(s)	766, 917
BamHI	GGATCC	1 cut(s)	958
BanI	GGYRCC	2 cut(s)	172, 250
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	46, 235
BccI	CCATC	2 cut(s)	896, 929
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	3 cut(s)	596, 692, 790
BfaI	CTAG	3 cut(s)	53, 108, 1082
BfmI	CTRYAG	2 cut(s)	612, 670
BfoI	RGCGCY	1 cut(s)	1028
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	3 cut(s)	60, 224, 1103
BlsI	GCNGC	3 cut(s)	61, 225, 1104
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	3 cut(s)	174, 252, 960
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	384
BplI	GAGNNNNNCTC	4 cut(s)	787, 819, 1046, 1078
Bpu10I	CCTNAGC	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	974
BsaBI	GATNNNNATC	1 cut(s)	1128
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 1087
Bse1I	ACTGG	3 cut(s)	588, 682, 756
Bse8I	GATNNNNATC	1 cut(s)	1128
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	310, 379, 940
BseJI	GATNNNNATC	1 cut(s)	1128
BseLI	CCNNNNNNNGG	2 cut(s)	242, 1087
BseMII	CTCAG	4 cut(s)	168, 632, 681, 818
BseNI	ACTGG	3 cut(s)	588, 682, 756
BseRI	GAGGAG	2 cut(s)	258, 277
BseXI	GCAGC	2 cut(s)	46, 235
BshFI	GGCC	1 cut(s)	707
BshNI	GGYRCC	2 cut(s)	172, 250
BsiHKAI	GWGCWC	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	242, 1087
BsmAI	GTCTC	3 cut(s)	596, 692, 790
BsnI	GGCC	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	6 cut(s)	394, 406, 894, 958, 1069, 1129
BspACI	CCGC	2 cut(s)	113, 1102
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	4 cut(s)	169, 631, 682, 817
BspLI	GGNNCC	3 cut(s)	174, 252, 960
BspPI	GGATC	5 cut(s)	889, 953, 966, 1064, 1124
BspT107I	GGYRCC	2 cut(s)	172, 250
BsrBI	CCGCTC	1 cut(s)	1102
BsrI	ACTGG	3 cut(s)	588, 682, 756
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	6 cut(s)	394, 406, 894, 958, 1069, 1129
Bst4CI	ACNGT	5 cut(s)	579, 703, 845, 860, 969
BstC8I	GCNNGC	2 cut(s)	105, 762
BstDEI	CTNAG	5 cut(s)	177, 618, 690, 804, 864
BstENI	CCTNNNNNAGG	1 cut(s)	1085
BstF5I	GGATG	3 cut(s)	310, 379, 940
BstH2I	RGCGCY	1 cut(s)	1028
BstHHI	GCGC	2 cut(s)	786, 1027
BstKTI	GATC	6 cut(s)	397, 409, 897, 961, 1072, 1132
BstMAI	GTCTC	3 cut(s)	596, 692, 790
BstMBI	GATC	6 cut(s)	394, 406, 894, 958, 1069, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	533, 869
BstNSI	RCATGY	1 cut(s)	884
BstSFI	CTRYAG	2 cut(s)	612, 670
BstV1I	GCAGC	2 cut(s)	46, 235
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	2 cut(s)	406, 958
BstXI	CCANNNNNNTGG	1 cut(s)	935
BstYI	RGATCY	2 cut(s)	406, 958
BsuRI	GGCC	1 cut(s)	707
BtsCI	GGATG	3 cut(s)	310, 379, 940
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	5 cut(s)	126, 675, 708, 850, 865
Cac8I	GCNNGC	2 cut(s)	105, 762
CaiI	CAGNNNCTG	1 cut(s)	799
CfoI	GCGC	2 cut(s)	786, 1027
Cfr13I	GGNCC	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	1078
CviAII	CATG	4 cut(s)	147, 436, 775, 881
CviQI	GTAC	1 cut(s)	1078
DdeI	CTNAG	5 cut(s)	177, 618, 690, 804, 864
DpnI	GATC	6 cut(s)	396, 408, 896, 960, 1071, 1131
DpnII	GATC	6 cut(s)	394, 406, 894, 958, 1069, 1129
Ecl136II	GAGCTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	285
EcoNI	CCTNNNNNAGG	1 cut(s)	1085
EcoT22I	ATGCAT	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	4 cut(s)	150, 439, 778, 884
FatI	CATG	4 cut(s)	146, 435, 774, 880
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	60, 224, 1103
FokI	GGATG	3 cut(s)	297, 386, 947
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	60, 224, 1103
FspBI	CTAG	3 cut(s)	53, 108, 1082
GlaI	GCGC	2 cut(s)	785, 1026
GluI	GCNGC	3 cut(s)	60, 224, 1103
HaeII	RGCGCY	1 cut(s)	1028
HaeIII	GGCC	1 cut(s)	707
HhaI	GCGC	2 cut(s)	786, 1027
Hin1II	CATG	4 cut(s)	150, 439, 778, 884
Hin6I	GCGC	2 cut(s)	784, 1025
HinP1I	GCGC	2 cut(s)	784, 1025
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	625, 802, 817, 1001
HphI	GGTGA	2 cut(s)	766, 917
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	8 cut(s)	273, 282, 292, 621, 630, 795, 807, 984
Hpy188III	TCNNGA	3 cut(s)	314, 953, 962
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	925
HpyCH4III	ACNGT	5 cut(s)	579, 703, 845, 860, 969
HpyCH4V	TGCA	6 cut(s)	198, 223, 310, 521, 880, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	533, 869
HpyF3I	CTNAG	5 cut(s)	177, 618, 690, 804, 864
Hsp92II	CATG	4 cut(s)	150, 439, 778, 884
HspAI	GCGC	2 cut(s)	784, 1025
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	394, 406, 894, 958, 1069, 1129
LmnI	GCTCC	5 cut(s)	100, 157, 290, 475, 505
Lsp1109I	GCAGC	2 cut(s)	46, 235
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	3 cut(s)	53, 108, 1082
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	6 cut(s)	396, 408, 896, 960, 1071, 1131
MbiI	CCGCTC	1 cut(s)	1102
MboI	GATC	6 cut(s)	394, 406, 894, 958, 1069, 1129
MboII	GAAGA	3 cut(s)	389, 643, 762
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	2 cut(s)	406, 958
MhlI	GDGCHC	1 cut(s)	287
MlyI	GAGTC	3 cut(s)	796, 811, 995
MmeI	TCCRAC	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	882
MseI	TTAA	6 cut(s)	41, 48, 516, 854, 924, 1149
MunI	CAATTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	533, 869
NdeII	GATC	6 cut(s)	394, 406, 894, 958, 1069, 1129
NlaIII	CATG	4 cut(s)	150, 439, 778, 884
NlaIV	GGNNCC	3 cut(s)	174, 252, 960
NsiI	ATGCAT	1 cut(s)	882
NspI	RCATGY	1 cut(s)	884
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	3 cut(s)	61, 225, 1104
PleI	GAGTC	3 cut(s)	796, 811, 995
PpsI	GAGTC	3 cut(s)	796, 811, 995
PshBI	ATTAAT	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	287
PspN4I	GGNNCC	3 cut(s)	174, 252, 960
PspPI	GGNCC	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	799
PsuI	RGATCY	2 cut(s)	406, 958
RsaI	GTAC	1 cut(s)	1079
RsaNI	GTAC	1 cut(s)	1078
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	6 cut(s)	41, 48, 516, 854, 924, 1149
SatI	GCNGC	3 cut(s)	60, 224, 1103
Sau3AI	GATC	6 cut(s)	394, 406, 894, 958, 1069, 1129
Sau96I	GGNCC	1 cut(s)	706
SchI	GAGTC	3 cut(s)	796, 811, 995
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	612, 670
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
SsiI	CCGC	2 cut(s)	113, 1102
SspMI	CTAG	3 cut(s)	53, 108, 1082
SstI	GAGCTC	1 cut(s)	287
TaaI	ACNGT	5 cut(s)	579, 703, 845, 860, 969
TaqI	TCGA	1 cut(s)	1031
TauI	GCSGC	1 cut(s)	1105
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	6 cut(s)	41, 48, 516, 854, 924, 1149
Tru9I	TTAA	6 cut(s)	41, 48, 516, 854, 924, 1149
TscAI	CASTG	5 cut(s)	133, 682, 708, 850, 865
TseI	GCWGC	2 cut(s)	59, 223
TspDTI	ATGAA	4 cut(s)	22, 135, 390, 1064
TspRI	CASTG	5 cut(s)	133, 682, 708, 850, 865
VspI	ATTAAT	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	1085
XapI	RAATTY	4 cut(s)	162, 182, 276, 725
XceI	RCATGY	1 cut(s)	884
XspI	CTAG	3 cut(s)	53, 108, 1082
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.