Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Reverse (-)

90349474 .. 90354394

Gene Structure 4921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG684800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCAGCTTGAAGCCCCATTGAGAGGAGTGGCACCAATGTTGACAGCAATTCGGAAAATTCAGAGCTCCTCGGAACATTTGACTTCCTTGCATCCAGAGTTTCTTGTTCTCTGTTTGTTGTCAAAAAGCTATAAAGCTGGATTGTCAATTTTGGATGAAGACATTTTTGAGGTTGATCAGCCAAAAGATCTTTTTCTCTATTGCTATTACGGGGGCATGATATGTATAGGACAAAAGAGTTTTCGCAAAGCGTTGGAGCTTTTACACAATGTTGTAACAGCTCCAATGTCAGTCATTAATGCAATAGCTGTTGAAGCATACAAAAAGTATATATTGGTTTCACTAATTCACAATGGACAGTTCTCTACCAGTCTCCCTAAATACACCTCATCTGTAGCTCAGAGGAATCTGAAGAACTTTTGTCAGCCCTACATAGAATTGGCAACCAGCTATAGCACTGGTAAAATTGCTGAGTTTGAGACAGTGGCCCAGAAACACAGGGAGAAATTTGATAATGACAACAATCTTGGACTGGTGAAGCAGGCTATATCTTCCATGTATAAGCGCAATATTCAGAGACTGACTCAGACATACTTGACTCTCTCCCTCCAAGATATAGCCAACAGTGTTCAGTTAAACAGTGCTAAGGAAGCTGAAATGCATGTGCTACAAATGATCCAAGATGGTGAGATATTTGCAACAATTAACCAGAAGGATGGAATGGTTAGCTTTCTTGAGGATCCTGAACAGTATAAAACCTGTCAGATGATTGAACATATTGACTCATCAATACAAAGGATAATGGCGCTTTCGAGGAAGCTGACTACTATGAACGAGAACATCTCTTGTGATCCTATGTTCCTAGCAAAGGTAGTATACTTCCATTACTGGCTGAACAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

301

Amino Acids

34.29

Weight (kDa)

7.07

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COP9_hel_rpt	PF22788	2 - 132	7e-47	COP9 signalosome complex subunit 3, N-terminal helical repeats
PCI	PF01399	164 - 244	1.2e-16	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	876
AclWI	GGATC	4 cut(s)	670, 734, 747, 845
AcsI	RAATTY	2 cut(s)	57, 506
AcuI	CTGAAG	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	23, 868
AgsI	TTSAA	3 cut(s)	11, 314, 773
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	377, 473, 571
AlwI	GGATC	4 cut(s)	670, 734, 747, 845
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	57, 506
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	567, 808
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	2 cut(s)	547, 698
BamHI	GGATCC	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	677, 710
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	377, 473, 571
BfaI	CTAG	1 cut(s)	863
BfmI	CTRYAG	2 cut(s)	393, 451
BfoI	RGCGCY	1 cut(s)	809
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	33, 741
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	165
BplI	GAGNNNNNCTC	4 cut(s)	568, 600, 827, 859
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	755
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 868
Bse1I	ACTGG	4 cut(s)	369, 463, 537, 893
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	91, 160, 721
BseLI	CCNNNNNNNGG	2 cut(s)	23, 868
BseMII	CTCAG	3 cut(s)	413, 462, 599
BseNI	ACTGG	4 cut(s)	369, 463, 537, 893
BseRI	GAGGAG	2 cut(s)	39, 58
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	488
BshNI	GGYRCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	23, 868
BsmAI	GTCTC	3 cut(s)	377, 473, 571
BsnI	GGCC	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	5 cut(s)	175, 187, 675, 739, 850
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	3 cut(s)	412, 463, 598
BspLI	GGNNCC	2 cut(s)	33, 741
BspPI	GGATC	4 cut(s)	670, 734, 747, 845
BspT107I	GGYRCC	1 cut(s)	31
BsrI	ACTGG	4 cut(s)	369, 463, 537, 893
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	5 cut(s)	175, 187, 675, 739, 850
BssNAI	GTATAC	1 cut(s)	877
Bst1107I	GTATAC	1 cut(s)	877
Bst4CI	ACNGT	5 cut(s)	360, 484, 626, 641, 750
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	399, 471, 585, 645
BstENI	CCTNNNNNAGG	1 cut(s)	866
BstF5I	GGATG	3 cut(s)	91, 160, 721
BstH2I	RGCGCY	1 cut(s)	809
BstHHI	GCGC	2 cut(s)	567, 808
BstKTI	GATC	5 cut(s)	178, 190, 678, 742, 853
BstMAI	GTCTC	3 cut(s)	377, 473, 571
BstMBI	GATC	5 cut(s)	175, 187, 675, 739, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 650
BstNSI	RCATGY	1 cut(s)	665
BstSFI	CTRYAG	2 cut(s)	393, 451
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	187, 739
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	2 cut(s)	187, 739
BstZ17I	GTATAC	1 cut(s)	877
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	91, 160, 721
BtsIMutI	CAGTG	4 cut(s)	456, 489, 631, 646
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	580
CfoI	GCGC	2 cut(s)	567, 808
Cfr13I	GGNCC	1 cut(s)	487
CviAII	CATG	3 cut(s)	217, 556, 662
DdeI	CTNAG	4 cut(s)	399, 471, 585, 645
DpnI	GATC	5 cut(s)	177, 189, 677, 741, 852
DpnII	GATC	5 cut(s)	175, 187, 675, 739, 850
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	66
EcoNI	CCTNNNNNAGG	1 cut(s)	866
EcoT22I	ATGCAT	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	3 cut(s)	220, 559, 665
FatI	CATG	3 cut(s)	216, 555, 661
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	876
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	3 cut(s)	78, 167, 728
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	863
GlaI	GCGC	2 cut(s)	566, 807
GluI	GCNGC	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	809
HaeIII	GGCC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	567, 808
Hin1II	CATG	3 cut(s)	220, 559, 665
Hin6I	GCGC	2 cut(s)	565, 806
HinP1I	GCGC	2 cut(s)	565, 806
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	4 cut(s)	406, 583, 598, 782
HphI	GGTGA	2 cut(s)	547, 698
Hpy166II	GTNNAC	2 cut(s)	42, 877
Hpy188I	TCNGA	8 cut(s)	54, 63, 73, 402, 411, 576, 588, 765
Hpy188III	TCNNGA	3 cut(s)	95, 734, 743
Hpy8I	GTNNAC	2 cut(s)	42, 877
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	5 cut(s)	360, 484, 626, 641, 750
HpyCH4V	TGCA	5 cut(s)	4, 91, 302, 661, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 650
HpyF3I	CTNAG	4 cut(s)	399, 471, 585, 645
Hsp92II	CATG	3 cut(s)	220, 559, 665
HspAI	GCGC	2 cut(s)	565, 806
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	175, 187, 675, 739, 850
LmnI	GCTCC	3 cut(s)	71, 256, 286
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	863
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	5 cut(s)	177, 189, 677, 741, 852
MboI	GATC	5 cut(s)	175, 187, 675, 739, 850
MboII	GAAGA	3 cut(s)	170, 424, 543
MflI	RGATCY	2 cut(s)	187, 739
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	8 cut(s)	48, 57, 147, 345, 437, 465, 506, 702
MlyI	GAGTC	3 cut(s)	577, 592, 776
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	17, 79, 163, 396, 397, 617, 730, 807
Mph1103I	ATGCAT	1 cut(s)	663
MseI	TTAA	3 cut(s)	297, 635, 705
MwoI	GCNNNNNNNGC	2 cut(s)	314, 650
NdeII	GATC	5 cut(s)	175, 187, 675, 739, 850
NlaIII	CATG	3 cut(s)	220, 559, 665
NlaIV	GGNNCC	2 cut(s)	33, 741
NsiI	ATGCAT	1 cut(s)	663
NspI	RCATGY	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	3 cut(s)	577, 592, 776
PpsI	GAGTC	3 cut(s)	577, 592, 776
PshBI	ATTAAT	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	33, 741
PspPI	GGNCC	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	187, 739
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	297, 635, 705
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	5 cut(s)	175, 187, 675, 739, 850
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	3 cut(s)	577, 592, 776
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	393, 451
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	8 cut(s)	48, 57, 147, 345, 437, 465, 506, 702
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	1 cut(s)	863
SstI	GAGCTC	1 cut(s)	68
TaaI	ACNGT	5 cut(s)	360, 484, 626, 641, 750
TaqI	TCGA	1 cut(s)	812
TasI	AATT	8 cut(s)	48, 57, 147, 345, 437, 465, 506, 702
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	297, 635, 705
Tru9I	TTAA	3 cut(s)	297, 635, 705
TscAI	CASTG	4 cut(s)	463, 489, 631, 646
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	171, 845
TspRI	CASTG	4 cut(s)	463, 489, 631, 646
VspI	ATTAAT	1 cut(s)	297
XagI	CCTNNNNNAGG	1 cut(s)	866
XapI	RAATTY	2 cut(s)	57, 506
XceI	RCATGY	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	876
XspI	CTAG	1 cut(s)	863
Zsp2I	ATGCAT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.