AT5G15340

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
4982273 .. 4984398
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15340.1

Sequence Viewer

Length: 1872 bp
ATGAAATGCTTATCCTACCAAAAAGTTCGTCTCCTTCTCCGACATTGCGCTCACCGTTCGTTTCTCCGTCCCGGCAAGGAATTGCACGCCGTTTTAACCACTTCTGGATTGAAGAAAGCTCCCAGGTCGTATCTTAGCAATGCGCTATTTCAGTTTTATGCTTCCTCTGGTGAAATGGTTACTGCCCAGAAACTGTTCGACGAAATTCCTCTTTCAGAAAAAGACAATGTGGATTGGACCACTTTGTTATCCTCTTTTTCTCGGTATGGATTGTTGGTTAATTCGATGAAGCTCTTCGTGGAAATGAGAAGGAAAAGAGTAGAGATTGATGATGTTTCTGTAGTTTGTTTGTTTGGCGTGTGTGCCAAGCTGGAGGATTTGGGTTTCGCTCAACAAGGACATGGGGTTGCTGTAAAGATGGGGGTTTTGACTAGTGTAAAGGTTTGTAATGCCTTGATGGATATGTATGGGAAATGTGGGCTTGTGAGTGAAGTCAAACGTATTTTCGAGGAGTTAGAGGAGAAGAGCGTTGTTTCATGGACGGTGGTTTTGGACACGGTTGTGAAATGGGAGGGGTTAGAGAGAGGAAGAGAGGTTTTTCACGAAATGCCTGAGAGAAATGCTGTTGCTTGGACGGTTATGGTTGCTGGGTATTTGGGAGCTGGGTTTACAAGGGAAGTATTGGAGCTTCTGGCAGAAATGGTGTTTAGATGTGGGCATGGTTTGAACTTTGTCACTCTTTGCTCGATGCTATCGGCTTGTGCTCAATCGGGAAATCTGGTAGTTGGAAGATGGGTTCATGTGTATGCATTGAAGAAGGAAATGATGATGGGGGAGGAAGCAAGTTATGATGATGTGATGGTGGGAACGGCATTGGTTGATATGTATGCTAAATGCGGAAACATAGATTCTTCCATGAACGTCTTCAGATTGATGCGTAAGAGGAATGTGGTGACATGGAATGCTTTGTTCAGCGGGTTAGCAATGCACGGGAAAGGTAGAATGGTGATTGACATGTTCCCACAGATGATAAGAGAGGTGAAGCCAGATGACTTAACCTTCACTGCTGTCTTAAGTGCTTGCAGCCACTCGGGGATAGTAGATGAAGGGTGGCGATGTTTCCACAGCCTCCGGTTCTATGGTTTGGAACCTAAGGTTGACCATTATGCATGTATGGTAGATCTTTTGGGCCGAGCTGGTCTTATTGAAGAAGCAGAGATCTTGATGAGGGAAATGCCAGTGCCTCCGAATGAAGTTGTCCTCGGTTCGCTTCTAGGCTCGTGCAGTGTCCATGGAAAGGTGGAGATAGCCGAACGAATTAAAAGAGAGCTTATTCAGATGAGTCCAGGCAACACAGAGTATCAAATACTTATGTCCAACATGTATGTTGCAGAAGGAAGGAGTGACATTGCTGATGGGTTAAGGGGAAGTCTGAGAAAGCGAGGCATCAGAAAAATACCTGGTTTGAGTTCCATTTATGTTAATGACTCAGTACATCGGTTTAGTTCAGGAGATAGATCACATCCGAGAACGAAAGAGATCTACTTGAAGTTGAATGAAGTGATTGAACGGATAAGATCAGCTGGCTACGTCCCTGATGTCTCTGGCCTGGTTTCACATTCGGAGGGTGACTTGGAGGAAAAAGAGCAAGCTTTGTGCTGTCACAGCGAGAAATTGGCTGTCTGTTTCGGGCTTCTGGAAACAAAACCGAGTACACCTCTTCTTGTCTTCAAGAATCTGAGGATATGTCGAGATTGTCATTCGGCTATGAAGATTGTTTCAAAGGTCTATGACCGAGAAATCATCATCAGAGACAGAAATAGATTTCATCAGTTCAAGGGAGGTTCTTGTTCTTGTTCCGATTATTGGTGA

Protein Analysis

623

Amino Acids

70.09

Weight (kDa)

8.25

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 315 - 362 9.7e-09 PPR repeat family
E_motif PF20431 431 - 492 7.8e-07 E motif
Eplus_motif PF20430 498 - 525 3.3e-07 E+ motif
DYW_deaminase PF14432 529 - 623 1.4e-34 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 897, 975
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 910
AfaI GTAC 2 cut(s) 1494, 1714
AfiI CCNNNNNNNGG 2 cut(s) 1297, 1866
AflII CTTAAG 1 cut(s) 1072
AflIII ACRYGT 2 cut(s) 1014, 1380
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 4 cut(s) 122, 1345, 1459, 1608
AleI CACNNNNGTG 1 cut(s) 560
AloI GAACNNNNNNTCC 2 cut(s) 780, 812
AluBI AGCT 9 cut(s) 119, 292, 370, 662, 688, 1196, 1330, 1583, 1652
AluI AGCT 9 cut(s) 119, 292, 370, 662, 688, 1196, 1330, 1583, 1652
Alw21I GWGCWC 1 cut(s) 766
Alw26I GTCTC 3 cut(s) 35, 1606, 1806
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 1090
AoxI GGCC 2 cut(s) 1189, 1606
ApeKI GCWGC 1 cut(s) 1083
ApoI RAATTY 1 cut(s) 204
ArsI GACNNNNNNTTYG 4 cut(s) 13, 45, 532, 564
Asp700I GAANNNNTTC 3 cut(s) 194, 293, 923
AspLEI GCGC 2 cut(s) 50, 145
AspS9I GGNCC 2 cut(s) 237, 1189
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 6 cut(s) 44, 182, 964, 1018, 1051, 1640
AvaI CYCGRG 1 cut(s) 1090
AvaII GGWCC 1 cut(s) 237
AxyI CCTNAGG 1 cut(s) 1152
BarI GAAGNNNNNNTAC 2 cut(s) 672, 704
BauI CACGAG 1 cut(s) 1279
BbsI GAAGAC 2 cut(s) 916, 1720
Bbv12I GWGCWC 1 cut(s) 766
BbvI GCAGC 1 cut(s) 1095
BccI CCATC 6 cut(s) 412, 451, 786, 823, 853, 1409
BceAI ACGGC 2 cut(s) 74, 885
BciT130I CCWGG 4 cut(s) 124, 1347, 1461, 1610
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 3 cut(s) 35, 1606, 1806
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 2 cut(s) 432, 1274
BfmI CTRYAG 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 1072
BglII AGATCT 3 cut(s) 1180, 1218, 1539
BisI GCNGC 1 cut(s) 1084
BlsI GCNGC 1 cut(s) 1085
Bme1390I CCNGG 5 cut(s) 72, 124, 1347, 1461, 1610
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 1 cut(s) 1090
BmgT120I GGNCC 2 cut(s) 237, 1189
BmiI GGNNCC 1 cut(s) 1149
BmrFI CCNGG 5 cut(s) 72, 124, 1347, 1461, 1610
BmsI GCATC 3 cut(s) 738, 924, 1455
BpiI GAAGAC 2 cut(s) 916, 1720
BplI GAGNNNNNCTC 2 cut(s) 1702, 1734
BpmI CTGGAG 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 122, 1261, 1291
BsaWI WCCGGW 1 cut(s) 1131
Bsc4I CCNNNNNNNGG 2 cut(s) 1297, 1866
Bse1I ACTGG 1 cut(s) 1238
Bse21I CCTNAGG 1 cut(s) 1152
Bse3DI GCAATG 4 cut(s) 43, 145, 990, 1407
BseBI CCWGG 4 cut(s) 124, 1347, 1461, 1610
BseDI CCNNGG 3 cut(s) 122, 1261, 1291
BseGI GGATG 1 cut(s) 1522
BseLI CCNNNNNNNGG 2 cut(s) 1297, 1866
BseMI GCAATG 4 cut(s) 43, 145, 990, 1407
BseMII CTCAG 4 cut(s) 603, 1424, 1503, 1730
BseNI ACTGG 1 cut(s) 1238
BseRI GAGGAG 2 cut(s) 524, 533
BseXI GCAGC 1 cut(s) 1095
BseYI CCCAGC 2 cut(s) 647, 662
BsgI GTGCAG 1 cut(s) 1303
BshFI GGCC 2 cut(s) 1191, 1608
BsiHKAI GWGCWC 1 cut(s) 766
BsiHKCI CYCGRG 1 cut(s) 1090
BsiSI CCGG 2 cut(s) 72, 1132
BslFI GGGAC 2 cut(s) 54, 1577
BslI CCNNNNNNNGG 2 cut(s) 1297, 1866
BsmAI GTCTC 3 cut(s) 35, 1606, 1806
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 54, 1577
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 2 cut(s) 1191, 1608
BsoBI CYCGRG 1 cut(s) 1090
Bsp1286I GDGCHC 1 cut(s) 766
Bsp143I GATC 5 cut(s) 1180, 1218, 1517, 1539, 1577
Bsp19I CCATGG 1 cut(s) 1291
BspACI CCGC 2 cut(s) 897, 975
BspANI GGCC 2 cut(s) 1191, 1608
BspCNI CTCAG 4 cut(s) 604, 1425, 1502, 1731
BspLI GGNNCC 1 cut(s) 1149
BspQI GCTCTTC 2 cut(s) 299, 518
BspTI CTTAAG 1 cut(s) 1072
BsrDI GCAATG 4 cut(s) 43, 145, 990, 1407
BsrI ACTGG 1 cut(s) 1238
BssECI CCNNGG 3 cut(s) 122, 1261, 1291
BssMI GATC 5 cut(s) 1180, 1218, 1517, 1539, 1577
BssSI CACGAG 1 cut(s) 1279
BssT1I CCWWGG 1 cut(s) 1291
Bst2BI CACGAG 1 cut(s) 1279
Bst2UI CCWGG 4 cut(s) 124, 1347, 1461, 1610
Bst4CI ACNGT 5 cut(s) 56, 195, 544, 559, 637
Bst6I CTCTTC 4 cut(s) 299, 518, 583, 1725
BstAFI CTTAAG 1 cut(s) 1072
BstC8I GCNNGC 4 cut(s) 87, 1081, 1585, 1650
BstDEI CTNAG 6 cut(s) 134, 612, 1152, 1433, 1489, 1739
BstDSI CCRYGG 1 cut(s) 1291
BstF5I GGATG 1 cut(s) 1522
BstHHI GCGC 2 cut(s) 50, 145
BstKTI GATC 5 cut(s) 1183, 1221, 1520, 1542, 1580
BstMAI GTCTC 3 cut(s) 35, 1606, 1806
BstMBI GATC 5 cut(s) 1180, 1218, 1517, 1539, 1577
BstMWI GCNNNNNNNGC 1 cut(s) 1665
BstNI CCWGG 4 cut(s) 124, 1347, 1461, 1610
BstNSI RCATGY 3 cut(s) 1018, 1173, 1384
BstSCI CCNGG 5 cut(s) 70, 122, 1345, 1459, 1608
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 1095
BstV2I GAAGAC 2 cut(s) 916, 1720
BstX2I RGATCY 3 cut(s) 1180, 1218, 1539
BstYI RGATCY 3 cut(s) 1180, 1218, 1539
Bsu36I CCTNAGG 1 cut(s) 1152
BsuRI GGCC 2 cut(s) 1191, 1608
BtgI CCRYGG 1 cut(s) 1291
BtgZI GCGATG 1 cut(s) 1129
BtsCI GGATG 1 cut(s) 1522
BtsI GCAGTG 2 cut(s) 1062, 1291
BtsIMutI CAGTG 3 cut(s) 1062, 1245, 1291
Cac8I GCNNGC 4 cut(s) 87, 1081, 1585, 1650
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 50, 145
Cfr13I GGNCC 2 cut(s) 237, 1189
CsiI ACCWGGT 1 cut(s) 1459
Csp6I GTAC 2 cut(s) 1493, 1713
CviQI GTAC 2 cut(s) 1493, 1713
DdeI CTNAG 6 cut(s) 134, 612, 1152, 1433, 1489, 1739
DpnI GATC 5 cut(s) 1182, 1220, 1519, 1541, 1579
DpnII GATC 5 cut(s) 1180, 1218, 1517, 1539, 1577
Eam1104I CTCTTC 4 cut(s) 299, 518, 583, 1725
EarI CTCTTC 4 cut(s) 299, 518, 583, 1725
Eco130I CCWWGG 1 cut(s) 1291
Eco47I GGWCC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 910
Eco81I CCTNAGG 1 cut(s) 1152
Eco88I CYCGRG 1 cut(s) 1090
EcoRII CCWGG 4 cut(s) 122, 1345, 1459, 1608
EcoT14I CCWWGG 1 cut(s) 1291
EcoT22I ATGCAT 2 cut(s) 811, 1171
ErhI CCWWGG 1 cut(s) 1291
Esp3I CGTCTC 1 cut(s) 35
FaqI GGGAC 2 cut(s) 54, 1577
FauI CCCGC 1 cut(s) 968
Fnu4HI GCNGC 1 cut(s) 1084
FokI GGATG 1 cut(s) 1509
Fsp4HI GCNGC 1 cut(s) 1084
FspBI CTAG 2 cut(s) 432, 1274
GlaI GCGC 2 cut(s) 49, 144
GluI GCNGC 1 cut(s) 1084
GsaI CCCAGC 2 cut(s) 651, 666
GsuI CTGGAG 1 cut(s) 392
HaeIII GGCC 2 cut(s) 1191, 1608
HapII CCGG 2 cut(s) 72, 1132
HhaI GCGC 2 cut(s) 50, 145
Hin6I GCGC 2 cut(s) 48, 143
HinP1I GCGC 2 cut(s) 48, 143
HincII GTYRAC 1 cut(s) 1159
HindII GTYRAC 1 cut(s) 1159
HindIII AAGCTT 1 cut(s) 1650
HinfI GANTC 4 cut(s) 908, 1342, 1487, 1735
HpaII CCGG 2 cut(s) 72, 1132
HphI GGTGA 6 cut(s) 44, 182, 964, 1018, 1051, 1640
Hpy166II GTNNAC 3 cut(s) 669, 1159, 1715
Hpy188III TCNNGA 8 cut(s) 105, 602, 771, 1222, 1509, 1697, 1732, 1751
Hpy8I GTNNAC 3 cut(s) 669, 1159, 1715
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 7 cut(s) 44, 303, 811, 1069, 1100, 1388, 1392
HpyCH4III ACNGT 5 cut(s) 56, 195, 544, 559, 637
HpyCH4IV ACGT 3 cut(s) 499, 921, 1590
HpyCH4V TGCA 7 cut(s) 85, 809, 988, 1083, 1169, 1284, 1391
HpyF10VI GCNNNNNNNGC 1 cut(s) 1665
HpyF3I CTNAG 6 cut(s) 134, 612, 1152, 1433, 1489, 1739
HpySE526I ACGT 3 cut(s) 499, 921, 1590
HspAI GCGC 2 cut(s) 48, 143
Kzo9I GATC 5 cut(s) 1180, 1218, 1517, 1539, 1577
LguI GCTCTTC 2 cut(s) 299, 518
LmnI GCTCC 3 cut(s) 124, 659, 685
Lsp1109I GCAGC 1 cut(s) 1095
LweI GCATC 3 cut(s) 738, 924, 1455
MabI ACCWGGT 1 cut(s) 1459
MaeI CTAG 2 cut(s) 432, 1274
MaeII ACGT 3 cut(s) 499, 921, 1590
MaeIII GTNAC 6 cut(s) 178, 733, 952, 1403, 1628, 1661
MalI GATC 5 cut(s) 1182, 1220, 1519, 1541, 1579
MboI GATC 5 cut(s) 1180, 1218, 1517, 1539, 1577
MflI RGATCY 3 cut(s) 1180, 1218, 1539
MhlI GDGCHC 1 cut(s) 766
MluCI AATT 5 cut(s) 80, 204, 280, 1317, 1673
MlyI GAGTC 2 cut(s) 1351, 1481
MmeI TCCRAC 3 cut(s) 64, 766, 1401
Mph1103I ATGCAT 2 cut(s) 811, 1171
MroXI GAANNNNTTC 3 cut(s) 194, 293, 923
MseI TTAA 7 cut(s) 95, 279, 1055, 1073, 1320, 1421, 1482
MslI CAYNNNNRTG 2 cut(s) 560, 804
MspA1I CMGCKG 2 cut(s) 975, 1583
MspCI CTTAAG 1 cut(s) 1072
MspI CCGG 2 cut(s) 72, 1132
MspR9I CCNGG 5 cut(s) 72, 124, 1347, 1461, 1610
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 4 cut(s) 124, 1347, 1461, 1610
MwoI GCNNNNNNNGC 1 cut(s) 1665
NciI CCSGG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 1291
NdeII GATC 5 cut(s) 1180, 1218, 1517, 1539, 1577
NlaIV GGNNCC 1 cut(s) 1149
NmeAIII GCCGAG 1 cut(s) 1217
NmuCI GTSAC 5 cut(s) 733, 952, 1403, 1628, 1661
NsiI ATGCAT 2 cut(s) 811, 1171
NspI RCATGY 3 cut(s) 1018, 1173, 1384
OliI CACNNNNGTG 1 cut(s) 560
PciI ACATGT 2 cut(s) 1014, 1380
PciSI GCTCTTC 2 cut(s) 299, 518
PctI GAATGC 1 cut(s) 967
PdmI GAANNNNTTC 3 cut(s) 194, 293, 923
PfeI GAWTC 2 cut(s) 908, 1735
PkrI GCNGC 1 cut(s) 1085
PleI GAGTC 2 cut(s) 1350, 1481
PpsI GAGTC 2 cut(s) 1350, 1481
PscI ACATGT 2 cut(s) 1014, 1380
Psp6I CCWGG 4 cut(s) 122, 1345, 1459, 1608
PspFI CCCAGC 2 cut(s) 647, 662
PspGI CCWGG 4 cut(s) 122, 1345, 1459, 1608
PspN4I GGNNCC 1 cut(s) 1149
PspPI GGNCC 2 cut(s) 237, 1189
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 3 cut(s) 1180, 1218, 1539
PvuII CAGCTG 1 cut(s) 1583
RsaI GTAC 2 cut(s) 1494, 1714
RsaNI GTAC 2 cut(s) 1493, 1713
RseI CAYNNNNRTG 2 cut(s) 560, 804
SapI GCTCTTC 2 cut(s) 299, 518
SaqAI TTAA 7 cut(s) 95, 279, 1055, 1073, 1320, 1421, 1482
SatI GCNGC 1 cut(s) 1084
Sau3AI GATC 5 cut(s) 1180, 1218, 1517, 1539, 1577
Sau96I GGNCC 2 cut(s) 237, 1189
SchI GAGTC 2 cut(s) 1351, 1481
ScrFI CCNGG 5 cut(s) 72, 124, 1347, 1461, 1610
SduI GDGCHC 1 cut(s) 766
SexAI ACCWGGT 1 cut(s) 1459
SfaNI GCATC 3 cut(s) 738, 924, 1455
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 2 cut(s) 560, 804
SmlI CTYRAG 1 cut(s) 1072
SmoI CTYRAG 1 cut(s) 1072
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 5 cut(s) 80, 204, 280, 1317, 1673
SsiI CCGC 2 cut(s) 897, 975
SspMI CTAG 2 cut(s) 432, 1274
StyD4I CCNGG 5 cut(s) 70, 122, 1345, 1459, 1608
StyI CCWWGG 1 cut(s) 1291
TaaI ACNGT 5 cut(s) 56, 195, 544, 559, 637
TaiI ACGT 3 cut(s) 502, 924, 1593
TaqI TCGA 5 cut(s) 198, 284, 507, 746, 1750
TaqII GACCGA 1 cut(s) 1809
TasI AATT 5 cut(s) 80, 204, 280, 1317, 1673
TatI WGTACW 2 cut(s) 1492, 1712
TfiI GAWTC 2 cut(s) 908, 1735
Tru1I TTAA 7 cut(s) 95, 279, 1055, 1073, 1320, 1421, 1482
Tru9I TTAA 7 cut(s) 95, 279, 1055, 1073, 1320, 1421, 1482
TscAI CASTG 3 cut(s) 1069, 1245, 1291
TseFI GTSAC 5 cut(s) 733, 952, 1403, 1628, 1661
TseI GCWGC 1 cut(s) 1083
Tsp45I GTSAC 5 cut(s) 733, 952, 1403, 1628, 1661
TspGWI ACGGA 2 cut(s) 56, 1585
TspRI CASTG 3 cut(s) 1069, 1245, 1291
Vha464I CTTAAG 1 cut(s) 1072
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 204
XceI RCATGY 3 cut(s) 1018, 1173, 1384
XmnI GAANNNNTTC 3 cut(s) 194, 293, 923
XspI CTAG 2 cut(s) 432, 1274
Zsp2I ATGCAT 2 cut(s) 811, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.