Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Reverse (-)

3659223 .. 3659941

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1055200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCAAGACGGGTGTTCGAAGTGATGGAGGAGCGGAGTGTAGTGTCGTGGACTGCAATTTTGGACGGTGTGGTTAAATTGGATGGTGTTGGAAATGGGAGAGTGGTGTTTGATCAAATGAATGAGAGAAATGAGGTTGCTTGGACGATCATGATTGTTGGATATCCAAGTATTGGGCTTATCTGCGAAAGCTTTTCGTTTCTTGGAGAAAAGGTTTTCGGGTCATGTGCACAATCCGGCGATAGGGTGACGGGCAGTTGGGTTCAAGCTTATGCTTTAAAGACAATGGAGAATGAGATTGACATCATGGTTGGCACAGCATTGGTTGATATGTATGCGAAATTTGGTACAGTGGACACTGCGTTAAAAGTTTTTGAGCAAATGCACCGAAGGAACGAAGCGACATGGAATGCTTTGCACGGTGGTTTGGCAATGCATGGAAGGGGAAAACTAGTTCTGAATATGTTTCCTCAAATGCTCGAGGAAGCCAAGCCAGACGAATTAACCTTCATTGCTTTGTTAACTGCTTGCAGCCACTCGGGCCTTTTTGATCAGGGCCGGCATTACTTTTATAATCTCCAAGCGTTACATGGTGCAACACCTCAGATCGAACACTGTGCGTGTATGGTGGATCTTCTAGGCAGGGCTGGTAATTGGAAGAGGCTGAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

225

Amino Acids

25.06

Weight (kDa)

5.97

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	173, 243
AgsI	TTSAA	1 cut(s)	266
AhlI	ACTAGT	1 cut(s)	451
AloI	GAACNNNNNNTCC	2 cut(s)	438, 470
AluBI	AGCT	2 cut(s)	192, 269
AluI	AGCT	2 cut(s)	192, 269
Alw21I	GWGCWC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	639
Ama87I	CYCGRG	2 cut(s)	479, 538
AoxI	GGCC	2 cut(s)	541, 556
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspS9I	GGNCC	2 cut(s)	541, 556
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	18
AvaI	CYCGRG	2 cut(s)	479, 538
BaeGI	GKGCMC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	2 cut(s)	19, 77
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BclI	TGATCA	2 cut(s)	112, 550
BcuI	ACTAGT	1 cut(s)	451
BfaI	CTAG	2 cut(s)	452, 638
BglI	GCCNNNNNGGC	1 cut(s)	540
BisI	GCNGC	1 cut(s)	532
BlsI	GCNGC	1 cut(s)	533
BmeT110I	CYCGRG	2 cut(s)	479, 538
BmgT120I	GGNCC	2 cut(s)	541, 556
Bpu14I	TTCGAA	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 243
Bse118I	RCCGGY	1 cut(s)	558
Bse3DI	GCAATG	2 cut(s)	438, 510
Bse8I	GATNNNNATC	1 cut(s)	302
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	173, 243
BseMI	GCAATG	2 cut(s)	438, 510
BseMII	CTCAG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	543
BshFI	GGCC	2 cut(s)	543, 558
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	2 cut(s)	479, 538
BsiSI	CCGG	2 cut(s)	237, 559
BslI	CCNNNNNNNGG	2 cut(s)	173, 243
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	543, 558
BsoBI	CYCGRG	2 cut(s)	479, 538
Bsp119I	TTCGAA	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	112, 147, 550, 606, 631
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	543, 558
BspCNI	CTCAG	1 cut(s)	616
BspHI	TCATGA	1 cut(s)	150
BspPI	GGATC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	438, 510
BsrFI	RCCGGY	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	558
BssMI	GATC	5 cut(s)	112, 147, 550, 606, 631
Bst4CI	ACNGT	4 cut(s)	68, 352, 422, 617
Bst6I	CTCTTC	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	529, 560
BstDEI	CTNAG	1 cut(s)	603
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	5 cut(s)	115, 150, 553, 609, 634
BstMBI	GATC	5 cut(s)	112, 147, 550, 606, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	543, 558
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	357, 357, 613
Cac8I	GCNNGC	2 cut(s)	529, 560
CciI	TCATGA	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	2 cut(s)	541, 556
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	6 cut(s)	151, 225, 307, 405, 437, 590
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	5 cut(s)	114, 149, 552, 608, 633
DpnII	GATC	5 cut(s)	112, 147, 550, 606, 631
DraI	TTTAAA	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	164
Eco88I	CYCGRG	2 cut(s)	479, 538
EcoRV	GATATC	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	438
FaeI	CATG	6 cut(s)	154, 228, 310, 408, 440, 593
FatI	CATG	6 cut(s)	150, 224, 306, 404, 436, 589
FbaI	TGATCA	2 cut(s)	112, 550
Fnu4HI	GCNGC	1 cut(s)	532
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	532
FspBI	CTAG	2 cut(s)	452, 638
GluI	GCNGC	1 cut(s)	532
HaeIII	GGCC	2 cut(s)	543, 558
HapII	CCGG	2 cut(s)	237, 559
Hin1II	CATG	6 cut(s)	154, 228, 310, 408, 440, 593
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	2 cut(s)	190, 267
HpaI	GTTAAC	1 cut(s)	522
HpaII	CCGG	2 cut(s)	237, 559
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	4 cut(s)	51, 230, 355, 522
Hpy188I	TCNGA	2 cut(s)	459, 606
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	4 cut(s)	51, 230, 355, 522
HpyAV	CCTTC	3 cut(s)	384, 435, 517
HpyCH4III	ACNGT	4 cut(s)	68, 352, 422, 617
HpyCH4V	TGCA	7 cut(s)	56, 230, 385, 418, 436, 531, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpyF3I	CTNAG	1 cut(s)	603
Hsp92II	CATG	6 cut(s)	154, 228, 310, 408, 440, 593
KroI	GCCGGC	1 cut(s)	558
KroNI	GCCGGC	1 cut(s)	560
Ksp22I	TGATCA	2 cut(s)	112, 550
KspAI	GTTAAC	1 cut(s)	522
Kzo9I	GATC	5 cut(s)	112, 147, 550, 606, 631
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	6 cut(s)	250, 507, 539, 572, 628, 633
Lsp1109I	GCAGC	1 cut(s)	543
MaeI	CTAG	2 cut(s)	452, 638
MaeIII	GTNAC	2 cut(s)	247, 585
MalI	GATC	5 cut(s)	114, 149, 552, 608, 633
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	5 cut(s)	112, 147, 550, 606, 631
MboII	GAAGA	2 cut(s)	626, 670
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	5 cut(s)	57, 77, 341, 500, 652
MmeI	TCCRAC	2 cut(s)	70, 139
MnlI	CCTC	6 cut(s)	22, 127, 475, 480, 612, 654
Mph1103I	ATGCAT	1 cut(s)	438
MroNI	GCCGGC	1 cut(s)	558
MseI	TTAA	5 cut(s)	75, 278, 365, 503, 521
MspI	CCGG	2 cut(s)	237, 559
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	540
NaeI	GCCGGC	1 cut(s)	560
NdeII	GATC	5 cut(s)	112, 147, 550, 606, 631
NgoMIV	GCCGGC	1 cut(s)	558
NlaIII	CATG	6 cut(s)	154, 228, 310, 408, 440, 593
NmuCI	GTSAC	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	438
NspV	TTCGAA	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	479
PagI	TCATGA	1 cut(s)	150
PctI	GAATGC	1 cut(s)	415
PdiI	GCCGGC	1 cut(s)	560
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	533
PsiI	TTATAA	1 cut(s)	573
PspPI	GGNCC	2 cut(s)	541, 556
PspXI	VCTCGAGB	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	75, 278, 365, 503, 521
SatI	GCNGC	1 cut(s)	532
Sau3AI	GATC	5 cut(s)	112, 147, 550, 606, 631
Sau96I	GGNCC	2 cut(s)	541, 556
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	6 cut(s)	138, 194, 216, 271, 509, 604
Sfr274I	CTCGAG	1 cut(s)	479
SfuI	TTCGAA	1 cut(s)	18
SlaI	CTCGAG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SpeI	ACTAGT	1 cut(s)	451
Sse9I	AATT	5 cut(s)	57, 77, 341, 500, 652
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	2 cut(s)	452, 638
TaaI	ACNGT	4 cut(s)	68, 352, 422, 617
TaqI	TCGA	3 cut(s)	18, 480, 609
TasI	AATT	5 cut(s)	57, 77, 341, 500, 652
Tru1I	TTAA	5 cut(s)	75, 278, 365, 503, 521
Tru9I	TTAA	5 cut(s)	75, 278, 365, 503, 521
TscAI	CASTG	3 cut(s)	357, 364, 620
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	531
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	134, 499
TspRI	CASTG	3 cut(s)	357, 364, 620
Van91I	CCANNNNNTGG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	479
XspI	CTAG	2 cut(s)	452, 638
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.