Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Forward (+)

81777031 .. 81777582

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGGAATGAGATGGATATTATGGTTGGCACAGCTCTTGTTGACATGTATGCAAAATGTGGTAGAGTTGACACAGCGTTGAAAGTTTTTGAGCACATGAAGTACAGGAATGTAGTGACATGGAATGCTTTGTTTAGTGGGTTAGCAATGCGTGGAAGAGGCAGAGTTGTTTTGATGGTGTTTCCTCAAATGCTGAAAGAGGCCAAGCCGGACGATTTAACCTTCACTGCTTTGTTGTGTGCTTGCAGCCACTCAGGACTTGTTGAACAGGGTCGGCATTACTTTCAGAATCTTGAAGCATTGTATGGCGTAACACCTAAGATAGAGCATTATGCTTGCATGGTGGATCTTCTGGGCAGGGCTGGCAATTTAGAAGAGGCAGGGATTTTAATAAAGAGAATGCCAATGCCTCCGAATGAGGTTGTTTTGGGTTCTCTTATTGGTTCATGCATTGTCCATGGAAAGCTACAGCTAGGTGAATGCATTCTGCAAGACCTGGTTCAAATAGATCCCCAAAACACAGAGTATCATGTCCTTCTCTCAAACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

183

Amino Acids

20.34

Weight (kDa)

6.05

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	36 - 83	3.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	354, 503
AfaI	GTAC	1 cut(s)	104
AflIII	ACRYGT	2 cut(s)	45, 546
AgsI	TTSAA	4 cut(s)	82, 266, 296, 503
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	3 cut(s)	35, 466, 472
AluI	AGCT	3 cut(s)	35, 466, 472
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	354, 503
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	7, 169
BciT130I	CCWGG	1 cut(s)	497
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	467
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	497
BmrFI	CCNGG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	209
BsmI	GAATGC	4 cut(s)	130, 405, 483, 485
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	346, 508
Bsp19I	CCATGG	1 cut(s)	457
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	266
BspPI	GGATC	2 cut(s)	354, 503
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	2 cut(s)	346, 508
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	497
Bst6I	CTCTTC	2 cut(s)	151, 369
BstC8I	GCNNGC	3 cut(s)	244, 337, 364
BstDEI	CTNAG	2 cut(s)	253, 318
BstDSI	CCRYGG	1 cut(s)	457
BstKTI	GATC	2 cut(s)	349, 511
BstMBI	GATC	2 cut(s)	346, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	2 cut(s)	49, 550
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	346, 508
BstYI	RGATCY	2 cut(s)	346, 508
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	244, 337, 364
CsiI	ACCWGGT	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	8 cut(s)	46, 97, 120, 340, 447, 458, 530, 547
CviJI	RGCY	7 cut(s)	35, 203, 208, 249, 362, 466, 472
CviKI_1	RGCY	7 cut(s)	35, 203, 208, 249, 362, 466, 472
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	253, 318
DpnI	GATC	2 cut(s)	348, 510
DpnII	GATC	2 cut(s)	346, 508
Eam1104I	CTCTTC	2 cut(s)	151, 369
EarI	CTCTTC	2 cut(s)	151, 369
Eco130I	CCWWGG	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	457
EcoT22I	ATGCAT	2 cut(s)	452, 485
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	8 cut(s)	49, 100, 123, 343, 450, 461, 533, 550
FatI	CATG	8 cut(s)	45, 96, 119, 339, 446, 457, 529, 546
Fnu4HI	GCNGC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	8 cut(s)	49, 100, 123, 343, 450, 461, 533, 550
HincII	GTYRAC	2 cut(s)	43, 70
HindII	GTYRAC	2 cut(s)	43, 70
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	43, 70
Hpy188I	TCNGA	2 cut(s)	288, 414
Hpy188III	TCNNGA	2 cut(s)	255, 293
Hpy8I	GTNNAC	2 cut(s)	43, 70
HpyAV	CCTTC	2 cut(s)	232, 545
HpyCH4V	TGCA	6 cut(s)	53, 246, 339, 450, 483, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpyF3I	CTNAG	2 cut(s)	253, 318
Hsp92II	CATG	8 cut(s)	49, 100, 123, 343, 450, 461, 533, 550
Kzo9I	GATC	2 cut(s)	346, 508
Lsp1109I	GCAGC	1 cut(s)	258
MabI	ACCWGGT	1 cut(s)	495
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	115, 310
MalI	GATC	2 cut(s)	348, 510
MboI	GATC	2 cut(s)	346, 508
MboII	GAAGA	3 cut(s)	168, 341, 386
MflI	RGATCY	2 cut(s)	346, 508
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	367
MnlI	CCTC	6 cut(s)	152, 193, 195, 370, 412, 420
Mph1103I	ATGCAT	2 cut(s)	452, 485
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	2 cut(s)	218, 389
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	497
Mva1269I	GAATGC	4 cut(s)	130, 405, 483, 485
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	2 cut(s)	346, 508
NlaIII	CATG	8 cut(s)	49, 100, 123, 343, 450, 461, 533, 550
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	2 cut(s)	452, 485
NspI	RCATGY	2 cut(s)	49, 550
PciI	ACATGT	2 cut(s)	45, 546
PctI	GAATGC	4 cut(s)	130, 405, 483, 485
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	248
PscI	ACATGT	2 cut(s)	45, 546
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PsuI	RGATCY	2 cut(s)	346, 508
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	218, 389
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	2 cut(s)	346, 508
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	37, 224, 319, 423, 468, 474, 478, 498
SexAI	ACCWGGT	1 cut(s)	495
SfcI	CTRYAG	1 cut(s)	467
Sse9I	AATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	457
TasI	AATT	1 cut(s)	367
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	218, 389
Tru9I	TTAA	2 cut(s)	218, 389
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	113, 435
TspRI	CASTG	1 cut(s)	232
XceI	RCATGY	2 cut(s)	49, 550
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	2 cut(s)	452, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.