Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Forward (+)

77137976 .. 77139873

Gene Structure 1898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1869 bp

ATGTCAGCACACACTGCCTTGACATTACTCTCCACGCGCCACCTCCGTTCTCTCATCCGAGATTGCACGCGCCGATCCTCCATCGAAGCGGGCAAGAAGCTCCACGCCGCCATCATCACCAGCGGGCTCGCCGCCTCGGCAGACTCGTTCCTCTACAATGCCCTGCTCCATCTCCACGCAGCTTGTGGCAGTGCAATTCATGCACGCAAGGTGTTCGACGAAATTCCCAATTCGCACAAAGACACTGTGGACTGGACCGTCCTCATGGGAAGCTTTGCTCGCCACGGCATGCATCAAACTGGGCTTCGTTTGTTTGTGGAAATGAGAAGAGAGGGAGTGAGTGTGGACGACGTTGCCATGGTTTGCTTGTTCAGTGGGTGTGCTCGGTTGGGCAACGTTGAGGTTGGGTTGCAAGGACATGGGTTCGTGGTGAAGGTGGGGTTGAGTTCTAGTGTCAGGTCGTGCAATGCGGCTATGGATATGTATGTCAAGTGTGGCCAGTTGAGTATGGCGAAGAGGGTTTTCGACGAAATGGGGGAGCGGAGTGTTGTGTCTTGGACTGTGATTTTGGATGGGGTGGTTAGATGGGAAGGTGTGGGAAGTGGGAGAGTGGTGTTTGATATAATGCCTGAGAGGAATGAGGTTGCTTGGACGATTATGATTGTTGGGTATGTGAGTGTTGGGCTTGTCCGGGAAGGTTTCTCTCTTCTGCAAGAAATGGTTTTTGGTTGTGGTTTGGGATTGAACTATGTCACACTTTGTTCGTTTTTATCGGCTTGTGCACAATCAGGAGATATGGTGACGGGCAGTTGGGTTCATGCCTGTGCTTATAAGACAATGGGGAATGAGATGGATATTATGGTTGGCACAGCTCTGGTTGACATGTATGCAAAATGTGGTAGAGTTGACACAGCGTTGAAAGTTTTTGAGCACATGAAGTACAGGAATGTAGTGACATGGAATGCTTTGCTTAGTGGGTTGGCAATGCATGGAAGAGGCAGAGTTGTTTTGAAGCCAGACGATTTAACCTTCACTGCTTTGTTGAGTGCTTGCAGCCACTCAGGACTTGTTGAACAGGGTCGGCATTACTTTCGGAATCTTGAAGCATTGTATGGCGTAACACCTAAGATAGAGCATTATGCTTGCATGGTGGATCTTCTGGGCAGGGCTGGCCATTTAGAAGAGGCTGGGATTTTAATCAAGAGAATGCCAATGCCTCCGAATGAGGTTGTTTTGGGTTCGCTTATTGGTTCTTGCAGTGTCCATGGAAAACTACAGCTAGGTGAAGGCATTCTGCAAGACCTGGTTCAAATAGATCCCCAAAACACAGAGTATCATGTCCTTCTCTCAAACATGTATGCTTTGGGTGGAAACCAGGACAAGGCTAATTTGTTGAGGCAGGGCCTTAAGAATAGGGGTATAAGAAAGATGCCTGGAATGAGCTCGCTTTATGTTGGTGGCCAAATTCATCAGTTCAGTGCTGGAGACAAGTCACACCCAAAGGCAATGGAGATTTACATGAAGTTGGATGAGATGATACAAAAGTTGAGAATGGCCGGTTATGTCCCAAATGCTGCTACTCAAGTTTTCTCTGGTTTTGACAACACAGACGAGAGTAATGTGGATAAGTTGGAGGAGATAGAACAGGCATTGTTCTCCCACAGTGAAAAGTTGGCAGTTTGTTATGGACTTATAAGCACAAGAGCAGGTTCGCCGCTTCACATATTCAAAAATCTACGCATCTGCCAGGACTGTCATTCTGCGATGAAACTAGTTTCTCATGTTTATAATCGAGAAATTGTCATCAGGGATCGCAACCGATTTCATTGTTTCAAGCAAGGTTCTTGTTCTTGCTCTGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

622

Amino Acids

68.58

Weight (kDa)

8.17

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	81 - 129	2.7e-07	PPR repeat family
E_motif	PF20431	423 - 482	1.6e-09	E motif
Eplus_motif	PF20430	489 - 516	6.4e-09	E+ motif
DYW_deaminase	PF14432	545 - 622	2.8e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	831, 1694, 1788
AasI	GACNNNNNNGTC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	1697
AccBSI	CCGCTC	1 cut(s)	541
AccII	CGCG	2 cut(s)	37, 70
AciI	CCGC	7 cut(s)	89, 108, 123, 132, 470, 541, 1715
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	4 cut(s)	69, 1161, 1310, 1818
AcoI	YGGCCR	4 cut(s)	496, 1171, 1459, 1554
AcsI	RAATTY	2 cut(s)	222, 1464
AfaI	GTAC	1 cut(s)	941
AfiI	CCNNNNNNNGG	1 cut(s)	1381
AflII	CTTAAG	1 cut(s)	1406
AflIII	ACRYGT	2 cut(s)	882, 1353
AgsI	TTSAA	8 cut(s)	745, 919, 1012, 1073, 1103, 1310, 1729, 1834
AhlI	ACTAGT	1 cut(s)	1771
AjnI	CCWGG	4 cut(s)	1302, 1374, 1432, 1746
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AluBI	AGCT	6 cut(s)	100, 182, 273, 872, 1279, 1443
AluI	AGCT	6 cut(s)	100, 182, 273, 872, 1279, 1443
Alw21I	GWGCWC	4 cut(s)	385, 784, 933, 1445
Alw26I	GTCTC	1 cut(s)	1479
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	4 cut(s)	69, 1161, 1310, 1818
AoxI	GGCC	5 cut(s)	496, 1171, 1402, 1459, 1554
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	3 cut(s)	179, 1053, 1574
ApoI	RAATTY	2 cut(s)	222, 1464
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
Asp700I	GAANNNNTTC	1 cut(s)	1290
AspLEI	GCGC	2 cut(s)	39, 72
AspS9I	GGNCC	2 cut(s)	255, 1402
AsuC2I	CCSGG	1 cut(s)	692
AsuHPI	GGTGA	4 cut(s)	109, 442, 811, 1295
AvaII	GGWCC	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	784
BaeI	ACNNNNGTAYC	2 cut(s)	1529, 1562
BalI	TGGCCA	3 cut(s)	498, 1173, 1461
BanII	GRGCYC	2 cut(s)	129, 1445
Bbv12I	GWGCWC	4 cut(s)	385, 784, 933, 1445
BbvI	GCAGC	3 cut(s)	191, 1065, 1561
BccI	CCATC	6 cut(s)	89, 119, 177, 566, 579, 844
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	4 cut(s)	196, 230, 1073, 1107
BciT130I	CCWGG	4 cut(s)	1304, 1376, 1434, 1748
BcnI	CCSGG	1 cut(s)	692
BcoDI	GTCTC	1 cut(s)	1479
BcuI	ACTAGT	1 cut(s)	1771
BfaI	CTAG	3 cut(s)	450, 1280, 1772
BfmI	CTRYAG	1 cut(s)	1274
BfrI	CTTAAG	1 cut(s)	1406
BfuAI	ACCTGC	1 cut(s)	1697
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	7 cut(s)	108, 132, 180, 471, 1054, 1575, 1715
BlsI	GCNGC	7 cut(s)	109, 133, 181, 472, 1055, 1576, 1716
Bme1390I	CCNGG	5 cut(s)	692, 1304, 1376, 1434, 1748
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	255, 1402
BmrFI	CCNGG	5 cut(s)	692, 1304, 1376, 1434, 1748
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	3 cut(s)	301, 1419, 1749
BmuI	ACTGGG	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	1503
BpuEI	CTTGAG	1 cut(s)	1566
BpuMI	CCSGG	1 cut(s)	692
BsaBI	GATNNNNATC	1 cut(s)	1196
BsaJI	CCNNGG	4 cut(s)	135, 283, 357, 1264
BsaXI	ACNNNNNCTCC	4 cut(s)	327, 357, 783, 813
Bsc4I	CCNNNNNNNGG	1 cut(s)	1381
Bse118I	RCCGGY	1 cut(s)	1556
Bse1I	ACTGG	3 cut(s)	257, 304, 499
Bse3DI	GCAATG	3 cut(s)	472, 990, 1512
Bse8I	GATNNNNATC	1 cut(s)	1196
BseBI	CCWGG	4 cut(s)	1304, 1376, 1434, 1748
BseDI	CCNNGG	4 cut(s)	135, 283, 357, 1264
BseGI	GGATG	3 cut(s)	54, 577, 1534
BseJI	GATNNNNATC	1 cut(s)	1196
BseLI	CCNNNNNNNGG	1 cut(s)	1381
BseMI	GCAATG	3 cut(s)	472, 990, 1512
BseMII	CTCAG	2 cut(s)	621, 1074
BseNI	ACTGG	3 cut(s)	257, 304, 499
BseRI	GAGGAG	1 cut(s)	1649
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	3 cut(s)	191, 1065, 1561
BseYI	CCCAGC	1 cut(s)	1187
Bsh1236I	CGCG	2 cut(s)	37, 70
BshFI	GGCC	5 cut(s)	498, 1173, 1404, 1461, 1556
BsiHKAI	GWGCWC	4 cut(s)	385, 784, 933, 1445
BsiSI	CCGG	2 cut(s)	691, 1557
BslFI	GGGAC	1 cut(s)	1550
BslI	CCNNNNNNNGG	1 cut(s)	1381
BsmAI	GTCTC	1 cut(s)	1479
BsmFI	GGGAC	1 cut(s)	1550
BsmI	GAATGC	3 cut(s)	967, 1212, 1290
BsnI	GGCC	5 cut(s)	498, 1173, 1404, 1461, 1556
Bsp1286I	GDGCHC	5 cut(s)	129, 385, 784, 933, 1445
Bsp143I	GATC	4 cut(s)	74, 1153, 1315, 1810
Bsp19I	CCATGG	2 cut(s)	357, 1264
BspACI	CCGC	7 cut(s)	89, 108, 123, 132, 470, 541, 1715
BspANI	GGCC	5 cut(s)	498, 1173, 1404, 1461, 1556
BspCNI	CTCAG	2 cut(s)	622, 1073
BspFNI	CGCG	2 cut(s)	37, 70
BspMI	ACCTGC	1 cut(s)	1697
BspPI	GGATC	4 cut(s)	69, 1161, 1310, 1818
BspTI	CTTAAG	1 cut(s)	1406
BsrBI	CCGCTC	1 cut(s)	541
BsrDI	GCAATG	3 cut(s)	472, 990, 1512
BsrFI	RCCGGY	1 cut(s)	1556
BsrI	ACTGG	3 cut(s)	257, 304, 499
BssAI	RCCGGY	1 cut(s)	1556
BssECI	CCNNGG	4 cut(s)	135, 283, 357, 1264
BssMI	GATC	4 cut(s)	74, 1153, 1315, 1810
BssT1I	CCWWGG	2 cut(s)	357, 1264
Bst2UI	CCWGG	4 cut(s)	1304, 1376, 1434, 1748
Bst4CI	ACNGT	5 cut(s)	247, 259, 562, 1664, 1754
Bst6I	CTCTTC	5 cut(s)	322, 509, 711, 988, 1176
BstAFI	CTTAAG	1 cut(s)	1406
BstAPI	GCANNNNNTGC	2 cut(s)	14, 200
BstDEI	CTNAG	4 cut(s)	630, 971, 1060, 1125
BstDSI	CCRYGG	3 cut(s)	283, 357, 1264
BstF5I	GGATG	3 cut(s)	54, 577, 1534
BstFNI	CGCG	2 cut(s)	37, 70
BstHHI	GCGC	2 cut(s)	39, 72
BstKTI	GATC	4 cut(s)	77, 1156, 1318, 1813
BstMAI	GTCTC	1 cut(s)	1479
BstMBI	GATC	4 cut(s)	74, 1153, 1315, 1810
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 137, 200, 279, 1170
BstNI	CCWGG	4 cut(s)	1304, 1376, 1434, 1748
BstNSI	RCATGY	3 cut(s)	292, 886, 1357
BstSCI	CCNGG	5 cut(s)	690, 1302, 1374, 1432, 1746
BstSFI	CTRYAG	1 cut(s)	1274
BstSLI	GKGCMC	1 cut(s)	784
BstUI	CGCG	2 cut(s)	37, 70
BstV1I	GCAGC	3 cut(s)	191, 1065, 1561
BstX2I	RGATCY	2 cut(s)	1153, 1315
BstYI	RGATCY	2 cut(s)	1153, 1315
BsuRI	GGCC	5 cut(s)	498, 1173, 1404, 1461, 1556
BtgI	CCRYGG	3 cut(s)	283, 357, 1264
BtgZI	GCGATG	1 cut(s)	1778
BtsCI	GGATG	3 cut(s)	54, 577, 1534
BtsI	GCAGTG	4 cut(s)	12, 196, 1032, 1264
BtsIMutI	CAGTG	8 cut(s)	12, 196, 243, 379, 1032, 1264, 1483, 1669
BveI	ACCTGC	1 cut(s)	1697
CfoI	GCGC	2 cut(s)	39, 72
Cfr10I	RCCGGY	1 cut(s)	1556
Cfr13I	GGNCC	2 cut(s)	255, 1402
CsiI	ACCWGGT	1 cut(s)	1302
Csp6I	GTAC	1 cut(s)	940
CspCI	CAANNNNNGTGG	2 cut(s)	164, 199
CviQI	GTAC	1 cut(s)	940
DdeI	CTNAG	4 cut(s)	630, 971, 1060, 1125
DpnI	GATC	4 cut(s)	76, 1155, 1317, 1812
DpnII	GATC	4 cut(s)	74, 1153, 1315, 1810
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	4 cut(s)	496, 1171, 1459, 1554
Eam1104I	CTCTTC	5 cut(s)	322, 509, 711, 988, 1176
EarI	CTCTTC	5 cut(s)	322, 509, 711, 988, 1176
Ecl136II	GAGCTC	1 cut(s)	1443
Eco130I	CCWWGG	2 cut(s)	357, 1264
Eco24I	GRGCYC	2 cut(s)	129, 1445
Eco47I	GGWCC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	1443
EcoICRI	GAGCTC	1 cut(s)	1443
EcoO109I	RGGNCCY	1 cut(s)	1402
EcoRII	CCWGG	4 cut(s)	1302, 1374, 1432, 1746
EcoT14I	CCWWGG	2 cut(s)	357, 1264
EcoT22I	ATGCAT	2 cut(s)	294, 990
EcoT38I	GRGCYC	2 cut(s)	129, 1445
ErhI	CCWWGG	2 cut(s)	357, 1264
FaqI	GGGAC	1 cut(s)	1550
FauI	CCCGC	2 cut(s)	82, 116
Fnu4HI	GCNGC	7 cut(s)	108, 132, 180, 471, 1054, 1575, 1715
FokI	GGATG	3 cut(s)	41, 584, 1541
FriOI	GRGCYC	2 cut(s)	129, 1445
Fsp4HI	GCNGC	7 cut(s)	108, 132, 180, 471, 1054, 1575, 1715
FspBI	CTAG	3 cut(s)	450, 1280, 1772
GlaI	GCGC	2 cut(s)	38, 71
GluI	GCNGC	7 cut(s)	108, 132, 180, 471, 1054, 1575, 1715
GsaI	CCCAGC	1 cut(s)	1191
GsuI	CTGGAG	1 cut(s)	1503
HaeIII	GGCC	5 cut(s)	498, 1173, 1404, 1461, 1556
HapII	CCGG	2 cut(s)	691, 1557
HhaI	GCGC	2 cut(s)	39, 72
Hin6I	GCGC	2 cut(s)	37, 70
HinP1I	GCGC	2 cut(s)	37, 70
HincII	GTYRAC	2 cut(s)	880, 907
HindII	GTYRAC	2 cut(s)	880, 907
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	2 cut(s)	143, 1096
HpaII	CCGG	2 cut(s)	691, 1557
HphI	GGTGA	4 cut(s)	109, 442, 811, 1295
Hpy166II	GTNNAC	5 cut(s)	250, 346, 782, 880, 907
Hpy188I	TCNGA	4 cut(s)	59, 1095, 1221, 1858
Hpy188III	TCNNGA	5 cut(s)	789, 1062, 1100, 1201, 1793
Hpy8I	GTNNAC	5 cut(s)	250, 346, 782, 880, 907
Hpy99I	CGWCG	3 cut(s)	221, 353, 530
HpyAV	CCTTC	6 cut(s)	427, 584, 689, 1039, 1280, 1352
HpyCH4III	ACNGT	5 cut(s)	247, 259, 562, 1664, 1754
HpyCH4IV	ACGT	2 cut(s)	351, 396
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 137, 200, 279, 1170
HpyF3I	CTNAG	4 cut(s)	630, 971, 1060, 1125
HpySE526I	ACGT	2 cut(s)	351, 396
HspAI	GCGC	2 cut(s)	37, 70
Kzo9I	GATC	4 cut(s)	74, 1153, 1315, 1810
LmnI	GCTCC	3 cut(s)	105, 171, 538
Lsp1109I	GCAGC	3 cut(s)	191, 1065, 1561
LweI	GCATC	3 cut(s)	301, 1419, 1749
MabI	ACCWGGT	1 cut(s)	1302
MaeI	CTAG	3 cut(s)	450, 1280, 1772
MaeII	ACGT	2 cut(s)	351, 396
MaeIII	GTNAC	5 cut(s)	751, 799, 952, 1117, 1491
MalI	GATC	4 cut(s)	76, 1155, 1317, 1812
MbiI	CCGCTC	1 cut(s)	541
MboI	GATC	4 cut(s)	74, 1153, 1315, 1810
MboII	GAAGA	6 cut(s)	339, 526, 698, 1005, 1148, 1193
MflI	RGATCY	2 cut(s)	1153, 1315
MhlI	GDGCHC	5 cut(s)	129, 385, 784, 933, 1445
MlsI	TGGCCA	3 cut(s)	498, 1173, 1461
MluCI	AATT	6 cut(s)	195, 222, 229, 1387, 1464, 1797
MluNI	TGGCCA	3 cut(s)	498, 1173, 1461
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	1506, 1611
Mox20I	TGGCCA	3 cut(s)	498, 1173, 1461
Mph1103I	ATGCAT	2 cut(s)	294, 990
MroXI	GAANNNNTTC	1 cut(s)	1290
MscI	TGGCCA	3 cut(s)	498, 1173, 1461
MseI	TTAA	3 cut(s)	1025, 1196, 1407
MslI	CAYNNNNRTG	1 cut(s)	822
Msp20I	TGGCCA	3 cut(s)	498, 1173, 1461
MspA1I	CMGCKG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	1406
MspI	CCGG	2 cut(s)	691, 1557
MspR9I	CCNGG	5 cut(s)	692, 1304, 1376, 1434, 1748
Mva1269I	GAATGC	3 cut(s)	967, 1212, 1290
MvaI	CCWGG	4 cut(s)	1304, 1376, 1434, 1748
MvnI	CGCG	2 cut(s)	37, 70
MwoI	GCNNNNNNNGC	5 cut(s)	14, 137, 200, 279, 1170
NciI	CCSGG	1 cut(s)	692
NcoI	CCATGG	2 cut(s)	357, 1264
NdeII	GATC	4 cut(s)	74, 1153, 1315, 1810
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	4 cut(s)	751, 799, 952, 1491
NsiI	ATGCAT	2 cut(s)	294, 990
NspI	RCATGY	3 cut(s)	292, 886, 1357
PaeI	GCATGC	1 cut(s)	292
PciI	ACATGT	2 cut(s)	882, 1353
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PctI	GAATGC	3 cut(s)	967, 1212, 1290
PdmI	GAANNNNTTC	1 cut(s)	1290
PfeI	GAWTC	1 cut(s)	1096
PfoI	TCCNGGA	1 cut(s)	690
PkrI	GCNGC	7 cut(s)	109, 133, 181, 472, 1055, 1576, 1716
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PscI	ACATGT	2 cut(s)	882, 1353
PsiI	TTATAA	3 cut(s)	831, 1694, 1788
Psp124BI	GAGCTC	1 cut(s)	1445
Psp1406I	AACGTT	1 cut(s)	396
Psp6I	CCWGG	4 cut(s)	1302, 1374, 1432, 1746
PspFI	CCCAGC	1 cut(s)	1187
PspGI	CCWGG	4 cut(s)	1302, 1374, 1432, 1746
PspPI	GGNCC	2 cut(s)	255, 1402
PsuI	RGATCY	2 cut(s)	1153, 1315
RsaI	GTAC	1 cut(s)	941
RsaNI	GTAC	1 cut(s)	940
RseI	CAYNNNNRTG	1 cut(s)	822
SacI	GAGCTC	1 cut(s)	1445
SaqAI	TTAA	3 cut(s)	1025, 1196, 1407
SatI	GCNGC	7 cut(s)	108, 132, 180, 471, 1054, 1575, 1715
Sau3AI	GATC	4 cut(s)	74, 1153, 1315, 1810
Sau96I	GGNCC	2 cut(s)	255, 1402
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	5 cut(s)	692, 1304, 1376, 1434, 1748
SduI	GDGCHC	5 cut(s)	129, 385, 784, 933, 1445
SexAI	ACCWGGT	1 cut(s)	1302
SfaNI	GCATC	3 cut(s)	301, 1419, 1749
SfcI	CTRYAG	1 cut(s)	1274
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	2 cut(s)	1406, 1581
SmoI	CTYRAG	2 cut(s)	1406, 1581
SpeI	ACTAGT	1 cut(s)	1771
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	6 cut(s)	195, 222, 229, 1387, 1464, 1797
SsiI	CCGC	7 cut(s)	89, 108, 123, 132, 470, 541, 1715
SspMI	CTAG	3 cut(s)	450, 1280, 1772
SstI	GAGCTC	1 cut(s)	1445
StyD4I	CCNGG	5 cut(s)	690, 1302, 1374, 1432, 1746
StyI	CCWWGG	2 cut(s)	357, 1264
TaaI	ACNGT	5 cut(s)	247, 259, 562, 1664, 1754
TaiI	ACGT	2 cut(s)	354, 399
TaqI	TCGA	4 cut(s)	84, 216, 525, 1792
TasI	AATT	6 cut(s)	195, 222, 229, 1387, 1464, 1797
TatI	WGTACW	1 cut(s)	939
TauI	GCSGC	4 cut(s)	110, 134, 473, 1717
TfiI	GAWTC	1 cut(s)	1096
Tru1I	TTAA	3 cut(s)	1025, 1196, 1407
Tru9I	TTAA	3 cut(s)	1025, 1196, 1407
TscAI	CASTG	8 cut(s)	19, 196, 250, 379, 1039, 1264, 1483, 1669
TseFI	GTSAC	4 cut(s)	751, 799, 952, 1491
TseI	GCWGC	3 cut(s)	179, 1053, 1574
Tsp45I	GTSAC	4 cut(s)	751, 799, 952, 1491
TspDTI	ATGAA	7 cut(s)	188, 806, 950, 1457, 1535, 1781, 1814
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	8 cut(s)	19, 196, 250, 379, 1039, 1264, 1483, 1669
Vha464I	CTTAAG	1 cut(s)	1406
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	2 cut(s)	222, 1464
XceI	RCATGY	3 cut(s)	292, 886, 1357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	1290
XspI	CTAG	3 cut(s)	450, 1280, 1772
Zsp2I	ATGCAT	2 cut(s)	294, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.