Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Reverse (-)

6357659 .. 6359850

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGGAAGGTGTGGGGAAGTGGGGAGAGCGGTGTTTGATACAATGCCTGAGAGGAATGAGGTTGCTTGGACGATTATGATTGTTGGGTATGTGAGTGTTGGGCTTGTCCGGGAAGGTTTTTCTCTTCTGCAAGAAATGGTTTTTGGTTGTGGTTTGGGATTGAACCATGTCACACTTTGTTCGTTTTTATCGGCTTGTGCACAATCGGGAGATATGGTGACGGGCAGTTGGGTTCATGCCTATGCTTGTAAGACAATGGGGAGTGAGATGGATGTTATGGTTAGCACAGCTCTGGTTGACATGTATGCAAAATGTGGTAGAGTAGACACAGCGTTGAAGGTTTTTGAGCACACGAAGTACAGGAATGTAGTGACATGGAATGCTTTGTTTAGTGGGTTGGCAATGCATGGAAGGGGCAGAGTTGTTTTGAAGGAGTTTCCTCAAATGCTGAAAGAGGCCAAGCCAGATGATTTAACCTTCACTGCTTTGTTGTGTGCTTGCAGCCACTCGGGACTTGTTGAACAGGGTCGGCATTACTTTCGGAATCTTGAAGCATTGTATGGCGTAACACCTAAGATAGAGCATTATGCTTGCATGGTGGATCTTCTGGGCAGGGCTGGCCATTTAGAAGAGGCTGGGATTTTAATAAAGAGAATGCCAATGCCTCCGAATGAGGTTGTTTTGGGTTCGCTTATTGGTTCTTGCAGTGTCCATGGAAAACTACAGCTAGGTGAAGGCATTCTGCAAGACCTGGTTCAAATAGATCCCCAAAACACAGAGTATCATGTCCTTCTCTCAAACATGTATGCTTTGGGTGGAAACCAGGACAAAGCTAATTTGTTGAGGCAGGGCCTTAAGAATAGGGGTATAAGAAAGATGCCTGGAATGAGCTCGCTTTATGTTGGTGGCCGAATTCATCAGTTCAGTGCTGGAGACAAGTCACACCCAAAGACAATGGAGATTTACATGAAGTTGGATGAGATGATACAAAAGTTGAGAATGGCCGGTTATGTCCCAAATGCTGCTACTCAAGTTTTCTCTGGTTTTGACAACACAGACGAGAGTAATGTGGATAAGTTGGAGGAGATAGAACAGGCATTGTTCTCCCACAGTGAAAGGTTGGCAGTTTGTTATGGACTTATAAGCACAAGAGCAGGTTTGCCGCTTCACATATTCAAGAATCTACGCATCTGCCAAGACTGTCATTCTGCGATGAAACTAGTTTCTCATGTTTATAATCGAGAAATTGTCATTAGGGATCGCAACCGATTTCATTGTTTCAAGCAAGGTTCTTGTTCTTGCTCTGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

438

Amino Acids

48.77

Weight (kDa)

7.56

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	121 - 168	8.3e-07	PPR repeat family
E_motif	PF20431	239 - 298	9.9e-10	E motif
Eplus_motif	PF20430	305 - 332	2.6e-08	E+ motif
DYW_deaminase	PF14432	361 - 438	5.8e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1142, 1236
Acc36I	ACCTGC	1 cut(s)	1145
AccBSI	CCGCTC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	2 cut(s)	29, 1163
AclWI	GGATC	3 cut(s)	609, 758, 1266
AcoI	YGGCCR	3 cut(s)	619, 907, 1002
AcsI	RAATTY	1 cut(s)	912
AfaI	GTAC	1 cut(s)	359
AflII	CTTAAG	1 cut(s)	854
AflIII	ACRYGT	2 cut(s)	300, 801
AgsI	TTSAA	8 cut(s)	163, 337, 430, 521, 551, 758, 1177, 1282
AhlI	ACTAGT	1 cut(s)	1219
AjnI	CCWGG	3 cut(s)	750, 822, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	290, 727, 833, 891
AluI	AGCT	4 cut(s)	290, 727, 833, 891
Alw21I	GWGCWC	3 cut(s)	202, 351, 893
Alw26I	GTCTC	1 cut(s)	927
Alw44I	GTGCAC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	609, 758, 1266
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	5 cut(s)	456, 619, 850, 907, 1002
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	501, 1022
ApoI	RAATTY	1 cut(s)	912
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	1 cut(s)	850
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	229, 743
AvaI	CYCGRG	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	202
BaeI	ACNNNNGTAYC	2 cut(s)	977, 1010
BalI	TGGCCA	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	893
Bbv12I	GWGCWC	3 cut(s)	202, 351, 893
BbvI	GCAGC	2 cut(s)	513, 1009
BccI	CCATC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	3 cut(s)	752, 824, 882
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	927
BcuI	ACTAGT	1 cut(s)	1219
BfaI	CTAG	2 cut(s)	728, 1220
BfmI	CTRYAG	1 cut(s)	722
BfrI	CTTAAG	1 cut(s)	854
BfuAI	ACCTGC	1 cut(s)	1145
BisI	GCNGC	3 cut(s)	502, 1023, 1163
BlsI	GCNGC	3 cut(s)	503, 1024, 1164
Bme1390I	CCNGG	4 cut(s)	110, 752, 824, 882
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	850
BmrFI	CCNGG	4 cut(s)	110, 752, 824, 882
BmsI	GCATC	2 cut(s)	867, 1197
BpmI	CTGGAG	1 cut(s)	951
BpuEI	CTTGAG	1 cut(s)	1014
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	712
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bse118I	RCCGGY	1 cut(s)	1004
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	752, 824, 882
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	2 cut(s)	277, 982
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	1097
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	513, 1009
BseYI	CCCAGC	1 cut(s)	635
BshFI	GGCC	5 cut(s)	458, 621, 852, 909, 1004
BsiHKAI	GWGCWC	3 cut(s)	202, 351, 893
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	109, 1005
BslFI	GGGAC	2 cut(s)	525, 998
BsmAI	GTCTC	1 cut(s)	927
BsmFI	GGGAC	2 cut(s)	525, 998
BsmI	GAATGC	3 cut(s)	385, 660, 738
BsnI	GGCC	5 cut(s)	458, 621, 852, 909, 1004
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	3 cut(s)	202, 351, 893
Bsp143I	GATC	3 cut(s)	601, 763, 1258
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	2 cut(s)	29, 1163
BspANI	GGCC	5 cut(s)	458, 621, 852, 909, 1004
BspCNI	CTCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	1145
BspPI	GGATC	3 cut(s)	609, 758, 1266
BspTI	CTTAAG	1 cut(s)	854
BsrBI	CCGCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	1004
BssAI	RCCGGY	1 cut(s)	1004
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	3 cut(s)	601, 763, 1258
BssT1I	CCWWGG	1 cut(s)	712
Bst2UI	CCWGG	3 cut(s)	752, 824, 882
Bst4CI	ACNGT	2 cut(s)	1112, 1202
Bst6I	CTCTTC	2 cut(s)	129, 624
BstAFI	CTTAAG	1 cut(s)	854
BstC8I	GCNNGC	4 cut(s)	499, 592, 619, 893
BstDEI	CTNAG	2 cut(s)	48, 573
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	2 cut(s)	277, 982
BstKTI	GATC	3 cut(s)	604, 766, 1261
BstMAI	GTCTC	1 cut(s)	927
BstMBI	GATC	3 cut(s)	601, 763, 1258
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	3 cut(s)	752, 824, 882
BstNSI	RCATGY	2 cut(s)	304, 805
BstSCI	CCNGG	4 cut(s)	108, 750, 822, 880
BstSFI	CTRYAG	1 cut(s)	722
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	513, 1009
BstX2I	RGATCY	2 cut(s)	601, 763
BstYI	RGATCY	2 cut(s)	601, 763
BsuRI	GGCC	5 cut(s)	458, 621, 852, 909, 1004
BtgI	CCRYGG	1 cut(s)	712
BtgZI	GCGATG	1 cut(s)	1226
BtsCI	GGATG	2 cut(s)	277, 982
BtsI	GCAGTG	2 cut(s)	480, 712
BtsIMutI	CAGTG	4 cut(s)	480, 712, 931, 1117
BveI	ACCTGC	1 cut(s)	1145
Cac8I	GCNNGC	4 cut(s)	499, 592, 619, 893
Cfr10I	RCCGGY	1 cut(s)	1004
Cfr13I	GGNCC	1 cut(s)	850
CsiI	ACCWGGT	1 cut(s)	750
Csp6I	GTAC	1 cut(s)	358
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	48, 573
DpnI	GATC	3 cut(s)	603, 765, 1260
DpnII	GATC	3 cut(s)	601, 763, 1258
EaeI	YGGCCR	3 cut(s)	619, 907, 1002
Eam1104I	CTCTTC	2 cut(s)	129, 624
EarI	CTCTTC	2 cut(s)	129, 624
Ecl136II	GAGCTC	1 cut(s)	891
Eco130I	CCWWGG	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	893
Eco53kI	GAGCTC	1 cut(s)	891
Eco88I	CYCGRG	1 cut(s)	508
EcoICRI	GAGCTC	1 cut(s)	891
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRI	GAATTC	1 cut(s)	912
EcoRII	CCWGG	3 cut(s)	750, 822, 880
EcoT14I	CCWWGG	1 cut(s)	712
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	893
ErhI	CCWWGG	1 cut(s)	712
FaqI	GGGAC	2 cut(s)	525, 998
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	502, 1023, 1163
FokI	GGATG	2 cut(s)	284, 989
FriOI	GRGCYC	1 cut(s)	893
Fsp4HI	GCNGC	3 cut(s)	502, 1023, 1163
FspBI	CTAG	2 cut(s)	728, 1220
GluI	GCNGC	3 cut(s)	502, 1023, 1163
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	951
HaeIII	GGCC	5 cut(s)	458, 621, 852, 909, 1004
HapII	CCGG	2 cut(s)	109, 1005
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	544, 1180
HpaII	CCGG	2 cut(s)	109, 1005
HphI	GGTGA	2 cut(s)	229, 743
Hpy166II	GTNNAC	3 cut(s)	200, 298, 325
Hpy188I	TCNGA	3 cut(s)	543, 669, 1306
Hpy188III	TCNNGA	5 cut(s)	207, 510, 548, 1177, 1241
Hpy8I	GTNNAC	3 cut(s)	200, 298, 325
HpyAV	CCTTC	7 cut(s)	107, 331, 405, 424, 487, 728, 800
HpyCH4III	ACNGT	2 cut(s)	1112, 1202
HpyCH4V	TGCA	8 cut(s)	130, 200, 308, 406, 501, 594, 705, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	2 cut(s)	48, 573
Kzo9I	GATC	3 cut(s)	601, 763, 1258
Lsp1109I	GCAGC	2 cut(s)	513, 1009
LweI	GCATC	2 cut(s)	867, 1197
MabI	ACCWGGT	1 cut(s)	750
MaeI	CTAG	2 cut(s)	728, 1220
MaeIII	GTNAC	5 cut(s)	169, 217, 370, 565, 939
MalI	GATC	3 cut(s)	603, 765, 1260
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	3 cut(s)	601, 763, 1258
MboII	GAAGA	3 cut(s)	116, 596, 641
MflI	RGATCY	2 cut(s)	601, 763
MhlI	GDGCHC	3 cut(s)	202, 351, 893
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	3 cut(s)	835, 912, 1245
MluNI	TGGCCA	1 cut(s)	621
MmeI	TCCRAC	2 cut(s)	954, 1059
MnlI	CCTC	9 cut(s)	45, 52, 448, 450, 625, 667, 675, 837, 1075
Mox20I	TGGCCA	1 cut(s)	621
Mph1103I	ATGCAT	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	3 cut(s)	473, 644, 855
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	621
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	2 cut(s)	109, 1005
MspR9I	CCNGG	4 cut(s)	110, 752, 824, 882
Mva1269I	GAATGC	3 cut(s)	385, 660, 738
MvaI	CCWGG	3 cut(s)	752, 824, 882
MwoI	GCNNNNNNNGC	1 cut(s)	618
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	712
NdeII	GATC	3 cut(s)	601, 763, 1258
NmuCI	GTSAC	4 cut(s)	169, 217, 370, 939
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	2 cut(s)	304, 805
PciI	ACATGT	2 cut(s)	300, 801
PctI	GAATGC	3 cut(s)	385, 660, 738
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	544, 1180
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	503, 1024, 1164
PscI	ACATGT	2 cut(s)	300, 801
PsiI	TTATAA	2 cut(s)	1142, 1236
Psp124BI	GAGCTC	1 cut(s)	893
Psp6I	CCWGG	3 cut(s)	750, 822, 880
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	3 cut(s)	750, 822, 880
PspPI	GGNCC	1 cut(s)	850
PsuI	RGATCY	2 cut(s)	601, 763
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	893
SaqAI	TTAA	3 cut(s)	473, 644, 855
SatI	GCNGC	3 cut(s)	502, 1023, 1163
Sau3AI	GATC	3 cut(s)	601, 763, 1258
Sau96I	GGNCC	1 cut(s)	850
ScrFI	CCNGG	4 cut(s)	110, 752, 824, 882
SduI	GDGCHC	3 cut(s)	202, 351, 893
SexAI	ACCWGGT	1 cut(s)	750
SfaNI	GCATC	2 cut(s)	867, 1197
SfcI	CTRYAG	1 cut(s)	722
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	854, 1029
SmoI	CTYRAG	2 cut(s)	854, 1029
SpeI	ACTAGT	1 cut(s)	1219
Sse9I	AATT	3 cut(s)	835, 912, 1245
SsiI	CCGC	2 cut(s)	29, 1163
SspMI	CTAG	2 cut(s)	728, 1220
SstI	GAGCTC	1 cut(s)	893
StyD4I	CCNGG	4 cut(s)	108, 750, 822, 880
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	2 cut(s)	1112, 1202
TaqI	TCGA	1 cut(s)	1240
TasI	AATT	3 cut(s)	835, 912, 1245
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	1165
TfiI	GAWTC	2 cut(s)	544, 1180
Tru1I	TTAA	3 cut(s)	473, 644, 855
Tru9I	TTAA	3 cut(s)	473, 644, 855
TscAI	CASTG	4 cut(s)	487, 712, 931, 1117
TseFI	GTSAC	4 cut(s)	169, 217, 370, 939
TseI	GCWGC	2 cut(s)	501, 1022
Tsp45I	GTSAC	4 cut(s)	169, 217, 370, 939
TspDTI	ATGAA	5 cut(s)	224, 905, 983, 1229, 1262
TspRI	CASTG	4 cut(s)	487, 712, 931, 1117
Vha464I	CTTAAG	1 cut(s)	854
VneI	GTGCAC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	912
XceI	RCATGY	2 cut(s)	304, 805
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	2 cut(s)	728, 1220
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.