Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Reverse (-)

4149236 .. 4151134

Gene Structure 1899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1053300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGAGATGGCCAACCGACACTGTCTTGACATCGCTCCCCACCCGCCAACTCCGTTCTCTTATACGAGAATGCACGCGTCAATCCTCCGTCGACGTCGGAAAGAAGCTCCACGCCGCCATTGTCACCAGCGGCCTCGCCGCCTCACCAGATTCATTCCTTCACAATGCCCTCCTCCATTTCCACGCAGCACATGGCAGTCCATTCTCTGCTCGCAAGCTGTTCGATGAAATTCCTCACTCGCACAAAGACGCTGTGGACTGGACCGTCCTCATGGGCTGCTTTGCCCGCCACGGAATGCTCCAATCTGGGCTTCGTTTGTTCGTCGAAATGAGAAGAGAAGACGTGAAGGTGGACGACGTGGCCATGGCTTGCTTGTTCAATGCGTGTGCTCGGCTGGGCAATGCTGAGGTTGGGGATCAAGGGCATGGGTTCGTGGTGAAGGTGGGTTGGGATTCTAGTGTCAAGGTCTGCAATGCGGCCATGGATATGTATGTCAAGTGTGGCCAATTGGGTATGGCGAGACGGCTGTTCGAAGCAACTGGGGAGCGGAGTGTAGTGTCGTGGACTGTGATTTTGGATGGTGTGGTTAAATTCGAAGGCGTGGGAAATGGGAGAGTGGTGTTTGACCAAATGCCTGAGAGAAATGAGGTTGCTTGGACGATTATGATTGTTGGATATATGAGTATTGGGCTTATCGGCGAAGCCTTTTCGCTTCTTGAAGAAATGGTTTTCGGTTGTGGTTTGAGATTAAATTATGTCACCCTCTGTTCGTTTTTATCGGCATGTGCACAATCGGGAGATAGGGTGACGGGCAGTTGGCTTCATGCTTATGCTTTAAAGACTATGGTGAATGAGATTGACATCATGGTTGGCACATCATTGGTTGATATGTATGCGAAGTGTGGTAGAGTAGACACCGCGTTAAAAGTTTTTGAGCAAATGCACCGAAGGAACGAGGTGACATGGAACGCTTTGCTCAGTGGTTTAGCAATGCATGGAAGGGGTAAACTTGTTTTGAATATGTTTCTTCAAATGCTTGAAGAAGCCAAGCCAGACGTATTGACCTTTGTTGCTTTGTTGAGTGCTTGCAGCCACTCGGGCCTTGTTGATCAGGGCCGGCATTACTTTCACAATCTTGAATCTTACGGCATAACTCCAAAGATAGAACACTATGCCTGTACGGTTGATCTTCTAGGAAGGGCTGGTCATTTGGAAGAGGCTGAAGTCTTGATCAAGCAAATGCCAATGCCTCCGAACGAGGTTGTTTTGGGTTCCCTTCTCGGTTCATGCAGAATCCACGGAAAACTAGAGCTTGGTGAACGTGTGCTGCAAGAACTGGTTCAATTGGATCCCCACAACACAGATTATCACGTCCTGCTTTCAAACATGTATTCTTTGGGAGGAAAGCAGGACAAGGCAAACCTACTGAGGCAGGATCTTAAGAATAGGGGTTTAAGAAAGCTTCCCGGAATAAGTTCAATTTATATTGGTGGCCAAGTTCATCAGTTCAGCGCAGGAGATAAGTCACACCCGAAAACAACGGAGATTTACATGAAATTGGATGAGATGATACAAAGATTGAGATTGGCAGGCTACATCCCAAATACCGATTCTCAAGTTTTCTCCGGCTTTGACAATGGAGACGATGATGCAGATAAGCAGGAGGAGATAGAGCAGGCATTGTTCCACCACAGCGAAAAGCTGGCAGTCTGTTTTGGGCTTATAAGCACGAAATCTGGCTCGCCTCTTTACATTTTCAAGAATCTGCGCATATGTGTAGACTGTCATTCGGCTATGAAAATAGTTTCCCATGTGTATAACCGAGAGATTGTGATCAGAGATCGGAATCGATTTCATTGCTTCAAGCAAGGTTCTTGTTCTTGCTCTGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

633

Amino Acids

70.48

Weight (kDa)

6.71

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	83 - 131	9.7e-07	PPR repeat family
PPR_2	PF13041	318 - 364	6.1e-07	PPR repeat family
E_motif	PF20431	433 - 494	2.4e-11	E motif
Eplus_motif	PF20430	500 - 527	4.3e-09	E+ motif
DYW_deaminase	PF14432	553 - 632	9.8e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1724
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	96
Acc16I	TGCGCA	1 cut(s)	1769
AccBSI	CCGCTC	1 cut(s)	547
AccI	GTMKAC	3 cut(s)	90, 912, 1779
AccII	CGCG	2 cut(s)	76, 920
AciI	CCGC	8 cut(s)	43, 114, 129, 138, 286, 476, 547, 918
AclWI	GGATC	4 cut(s)	423, 1343, 1356, 1443
AcoI	YGGCCR	5 cut(s)	8, 360, 477, 502, 1492
AcsI	RAATTY	2 cut(s)	228, 590
AcuI	CTGAAG	1 cut(s)	1242
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	1180
AflII	CTTAAG	1 cut(s)	1439
AflIII	ACRYGT	3 cut(s)	74, 1321, 1386
AjiI	CACGTC	3 cut(s)	343, 358, 1372
AjuI	GAANNNNNNNTTGG	4 cut(s)	294, 326, 1594, 1626
AluBI	AGCT	5 cut(s)	106, 217, 1312, 1462, 1702
AluI	AGCT	5 cut(s)	106, 217, 1312, 1462, 1702
Alw21I	GWGCWC	2 cut(s)	391, 790
Alw26I	GTCTC	2 cut(s)	514, 1635
Alw44I	GTGCAC	1 cut(s)	786
AlwI	GGATC	4 cut(s)	423, 1343, 1356, 1443
Ama87I	CYCGRG	1 cut(s)	1096
AoxI	GGCC	8 cut(s)	8, 130, 360, 477, 502, 1099, 1114, 1492
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	4 cut(s)	185, 276, 1089, 1327
ApoI	RAATTY	2 cut(s)	228, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	556, 588
Asp700I	GAANNNNTTC	2 cut(s)	1338, 1474
AspLEI	GCGC	2 cut(s)	1514, 1770
AspS9I	GGNCC	3 cut(s)	261, 1099, 1114
AsuC2I	CCSGG	1 cut(s)	1467
AsuHPI	GGTGA	8 cut(s)	115, 135, 448, 751, 817, 859, 970, 1328
AsuII	TTCGAA	2 cut(s)	531, 594
AvaI	CYCGRG	1 cut(s)	1096
AvaII	GGWCC	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	790
BalI	TGGCCA	4 cut(s)	10, 362, 504, 1494
BamHI	GGATCC	1 cut(s)	1348
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	391, 790
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	4 cut(s)	197, 263, 1101, 1314
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	2 cut(s)	539, 1162
BcgI	CGANNNNNNTGC	4 cut(s)	202, 236, 1839, 1873
BclI	TGATCA	3 cut(s)	1108, 1230, 1833
BcnI	CCSGG	1 cut(s)	1467
BcoDI	GTCTC	2 cut(s)	514, 1635
BfaI	CTAG	3 cut(s)	456, 1193, 1307
BfrI	CTTAAG	1 cut(s)	1439
BglI	GCCNNNNNGGC	1 cut(s)	1098
BisI	GCNGC	8 cut(s)	114, 130, 138, 186, 277, 477, 1090, 1328
BlsI	GCNGC	8 cut(s)	115, 131, 139, 187, 278, 478, 1091, 1329
Bme1390I	CCNGG	1 cut(s)	1467
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	1096
BmgBI	CACGTC	3 cut(s)	343, 358, 1372
BmgT120I	GGNCC	3 cut(s)	261, 1099, 1114
BmiI	GGNNCC	2 cut(s)	1273, 1350
BmrFI	CCNGG	1 cut(s)	1467
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	1639
BmuI	ACTGGG	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	405
Bpu14I	TTCGAA	2 cut(s)	531, 594
BpuEI	CTTGAG	1 cut(s)	1599
BpuMI	CCSGG	1 cut(s)	1467
Bsa29I	ATCGAT	1 cut(s)	1849
BsaBI	GATNNNNATC	3 cut(s)	860, 1832, 1845
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	289, 363, 480, 1297
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bse118I	RCCGGY	1 cut(s)	1116
Bse1I	ACTGG	4 cut(s)	263, 544, 1341, 1898
Bse3DI	GCAATG	4 cut(s)	406, 478, 996, 1855
Bse8I	GATNNNNATC	3 cut(s)	860, 1832, 1845
BseCI	ATCGAT	1 cut(s)	1849
BseDI	CCNNGG	4 cut(s)	289, 363, 480, 1297
BseGI	GGATG	3 cut(s)	583, 1567, 1596
BseJI	GATNNNNATC	3 cut(s)	860, 1832, 1845
BseMI	GCAATG	4 cut(s)	406, 478, 996, 1855
BseMII	CTCAG	4 cut(s)	396, 627, 991, 1418
BseNI	ACTGG	4 cut(s)	263, 544, 1341, 1898
BseRI	GAGGAG	2 cut(s)	161, 1679
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	4 cut(s)	197, 263, 1101, 1314
BseYI	CCCAGC	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	76, 920
BshFI	GGCC	8 cut(s)	10, 132, 362, 479, 504, 1101, 1116, 1494
BshVI	ATCGAT	1 cut(s)	1849
BsiHKAI	GWGCWC	2 cut(s)	391, 790
BsiHKCI	CYCGRG	1 cut(s)	1096
BsiSI	CCGG	3 cut(s)	1117, 1467, 1626
BsmAI	GTCTC	2 cut(s)	514, 1635
BsmBI	CGTCTC	2 cut(s)	514, 1635
BsmI	GAATGC	2 cut(s)	74, 300
BsnI	GGCC	8 cut(s)	10, 132, 362, 479, 504, 1101, 1116, 1494
BsoBI	CYCGRG	1 cut(s)	1096
Bsp119I	TTCGAA	2 cut(s)	531, 594
Bsp1286I	GDGCHC	2 cut(s)	391, 790
Bsp143I	GATC	8 cut(s)	415, 1108, 1186, 1230, 1348, 1435, 1833, 1840
Bsp19I	CCATGG	2 cut(s)	363, 480
BspACI	CCGC	8 cut(s)	43, 114, 129, 138, 286, 476, 547, 918
BspANI	GGCC	8 cut(s)	10, 132, 362, 479, 504, 1101, 1116, 1494
BspCNI	CTCAG	4 cut(s)	397, 628, 990, 1419
BspDI	ATCGAT	1 cut(s)	1849
BspFNI	CGCG	2 cut(s)	76, 920
BspLI	GGNNCC	2 cut(s)	1273, 1350
BspPI	GGATC	4 cut(s)	423, 1343, 1356, 1443
BspT104I	TTCGAA	2 cut(s)	531, 594
BspTI	CTTAAG	1 cut(s)	1439
BsrBI	CCGCTC	1 cut(s)	547
BsrDI	GCAATG	4 cut(s)	406, 478, 996, 1855
BsrFI	RCCGGY	1 cut(s)	1116
BsrI	ACTGG	4 cut(s)	263, 544, 1341, 1898
BssAI	RCCGGY	1 cut(s)	1116
BssECI	CCNNGG	4 cut(s)	289, 363, 480, 1297
BssMI	GATC	8 cut(s)	415, 1108, 1186, 1230, 1348, 1435, 1833, 1840
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	363, 480
Bst4CI	ACNGT	5 cut(s)	22, 265, 568, 1183, 1784
Bst6I	CTCTTC	2 cut(s)	328, 1209
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	1439
BstBI	TTCGAA	2 cut(s)	531, 594
BstDEI	CTNAG	4 cut(s)	405, 636, 977, 1427
BstDSI	CCRYGG	4 cut(s)	289, 363, 480, 1297
BstF5I	GGATG	3 cut(s)	583, 1567, 1596
BstFNI	CGCG	2 cut(s)	76, 920
BstHHI	GCGC	2 cut(s)	1514, 1770
BstKTI	GATC	8 cut(s)	418, 1111, 1189, 1233, 1351, 1438, 1836, 1843
BstMAI	GTCTC	2 cut(s)	514, 1635
BstMBI	GATC	8 cut(s)	415, 1108, 1186, 1230, 1348, 1435, 1833, 1840
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 1098
BstNSI	RCATGY	2 cut(s)	786, 1390
BstSCI	CCNGG	1 cut(s)	1465
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	2 cut(s)	76, 920
BstV1I	GCAGC	4 cut(s)	197, 263, 1101, 1314
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	1348, 1435
BstYI	RGATCY	2 cut(s)	1348, 1435
Bsu15I	ATCGAT	1 cut(s)	1849
BsuRI	GGCC	8 cut(s)	10, 132, 362, 479, 504, 1101, 1116, 1494
BsuTUI	ATCGAT	1 cut(s)	1849
BtgI	CCRYGG	4 cut(s)	289, 363, 480, 1297
BtgZI	GCGATG	1 cut(s)	15
BtrI	CACGTC	3 cut(s)	343, 358, 1372
BtsCI	GGATG	3 cut(s)	583, 1567, 1596
BtsIMutI	CAGTG	2 cut(s)	18, 985
CfoI	GCGC	2 cut(s)	1514, 1770
Cfr10I	RCCGGY	1 cut(s)	1116
Cfr13I	GGNCC	3 cut(s)	261, 1099, 1114
ClaI	ATCGAT	1 cut(s)	1849
CseI	GACGC	2 cut(s)	65, 257
Csp6I	GTAC	1 cut(s)	1179
CviQI	GTAC	1 cut(s)	1179
DdeI	CTNAG	4 cut(s)	405, 636, 977, 1427
DpnI	GATC	8 cut(s)	417, 1110, 1188, 1232, 1350, 1437, 1835, 1842
DpnII	GATC	8 cut(s)	415, 1108, 1186, 1230, 1348, 1435, 1833, 1840
DraI	TTTAAA	1 cut(s)	837
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	5 cut(s)	8, 360, 477, 502, 1492
Eam1104I	CTCTTC	2 cut(s)	328, 1209
EarI	CTCTTC	2 cut(s)	328, 1209
Eco130I	CCWWGG	2 cut(s)	363, 480
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	1242
Eco88I	CYCGRG	1 cut(s)	1096
EcoT14I	CCWWGG	2 cut(s)	363, 480
EcoT22I	ATGCAT	1 cut(s)	996
ErhI	CCWWGG	2 cut(s)	363, 480
Esp3I	CGTCTC	2 cut(s)	514, 1635
FauI	CCCGC	2 cut(s)	50, 293
FauNDI	CATATG	1 cut(s)	1772
FbaI	TGATCA	3 cut(s)	1108, 1230, 1833
FblI	GTMKAC	3 cut(s)	90, 912, 1779
Fnu4HI	GCNGC	8 cut(s)	114, 130, 138, 186, 277, 477, 1090, 1328
FokI	GGATG	3 cut(s)	590, 1574, 1583
Fsp4HI	GCNGC	8 cut(s)	114, 130, 138, 186, 277, 477, 1090, 1328
FspBI	CTAG	3 cut(s)	456, 1193, 1307
FspI	TGCGCA	1 cut(s)	1769
GlaI	GCGC	2 cut(s)	1513, 1769
GluI	GCNGC	8 cut(s)	114, 130, 138, 186, 277, 477, 1090, 1328
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	8 cut(s)	10, 132, 362, 479, 504, 1101, 1116, 1494
HapII	CCGG	3 cut(s)	1117, 1467, 1626
HgaI	GACGC	2 cut(s)	65, 257
HhaI	GCGC	2 cut(s)	1514, 1770
Hin1I	GRCGYC	1 cut(s)	93
Hin6I	GCGC	2 cut(s)	1512, 1768
HinP1I	GCGC	2 cut(s)	1512, 1768
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	1460
HinfI	GANTC	7 cut(s)	149, 452, 1139, 1293, 1610, 1762, 1846
HpaII	CCGG	3 cut(s)	1117, 1467, 1626
HphI	GGTGA	8 cut(s)	115, 135, 448, 751, 817, 859, 970, 1328
Hpy166II	GTNNAC	9 cut(s)	91, 256, 352, 564, 788, 913, 1007, 1319, 1780
Hpy188I	TCNGA	5 cut(s)	98, 1254, 1838, 1845, 1888
Hpy188III	TCNNGA	6 cut(s)	25, 716, 795, 1136, 1228, 1759
Hpy8I	GTNNAC	9 cut(s)	91, 256, 352, 564, 788, 913, 1007, 1319, 1780
Hpy99I	CGWCG	5 cut(s)	92, 95, 98, 326, 359
HpyAV	CCTTC	8 cut(s)	167, 340, 433, 590, 942, 993, 1191, 1286
HpyCH4III	ACNGT	5 cut(s)	22, 265, 568, 1183, 1784
HpyCH4IV	ACGT	6 cut(s)	93, 342, 357, 1056, 1321, 1371
HpyCH4V	TGCA	9 cut(s)	72, 471, 788, 943, 994, 1089, 1290, 1330, 1652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 1098
HpyF3I	CTNAG	4 cut(s)	405, 636, 977, 1427
HpySE526I	ACGT	6 cut(s)	93, 342, 357, 1056, 1321, 1371
Hsp92I	GRCGYC	1 cut(s)	93
HspAI	GCGC	2 cut(s)	1512, 1768
KroI	GCCGGC	1 cut(s)	1116
KroNI	GCCGGC	1 cut(s)	1118
Ksp22I	TGATCA	3 cut(s)	1108, 1230, 1833
Kzo9I	GATC	8 cut(s)	415, 1108, 1186, 1230, 1348, 1435, 1833, 1840
LmnI	GCTCC	4 cut(s)	39, 111, 303, 544
Lsp1109I	GCAGC	4 cut(s)	197, 263, 1101, 1314
LweI	GCATC	1 cut(s)	1639
MaeI	CTAG	3 cut(s)	456, 1193, 1307
MaeII	ACGT	6 cut(s)	93, 342, 357, 1056, 1321, 1371
MaeIII	GTNAC	5 cut(s)	121, 757, 805, 958, 1524
MalI	GATC	8 cut(s)	417, 1110, 1188, 1232, 1350, 1437, 1835, 1842
MbiI	CCGCTC	1 cut(s)	547
MboI	GATC	8 cut(s)	415, 1108, 1186, 1230, 1348, 1435, 1833, 1840
MboII	GAAGA	7 cut(s)	345, 350, 731, 1019, 1052, 1181, 1226
MfeI	CAATTG	2 cut(s)	506, 1343
MflI	RGATCY	2 cut(s)	1348, 1435
MhlI	GDGCHC	2 cut(s)	391, 790
MlsI	TGGCCA	4 cut(s)	10, 362, 504, 1494
MluCI	AATT	7 cut(s)	228, 506, 590, 751, 1343, 1479, 1556
MluI	ACGCGT	1 cut(s)	74
MluNI	TGGCCA	4 cut(s)	10, 362, 504, 1494
MmeI	TCCRAC	2 cut(s)	76, 652
Mox20I	TGGCCA	4 cut(s)	10, 362, 504, 1494
Mph1103I	ATGCAT	1 cut(s)	996
MroNI	GCCGGC	1 cut(s)	1116
MroXI	GAANNNNTTC	2 cut(s)	1338, 1474
MscI	TGGCCA	4 cut(s)	10, 362, 504, 1494
MseI	TTAA	6 cut(s)	588, 749, 836, 923, 1440, 1454
MslI	CAYNNNNRTG	2 cut(s)	485, 828
Msp20I	TGGCCA	4 cut(s)	10, 362, 504, 1494
MspA1I	CMGCKG	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	1439
MspI	CCGG	3 cut(s)	1117, 1467, 1626
MspR9I	CCNGG	1 cut(s)	1467
MunI	CAATTG	2 cut(s)	506, 1343
Mva1269I	GAATGC	2 cut(s)	74, 300
MvnI	CGCG	2 cut(s)	76, 920
MwoI	GCNNNNNNNGC	2 cut(s)	285, 1098
NaeI	GCCGGC	1 cut(s)	1118
NciI	CCSGG	1 cut(s)	1467
NcoI	CCATGG	2 cut(s)	363, 480
NdeI	CATATG	1 cut(s)	1772
NdeII	GATC	8 cut(s)	415, 1108, 1186, 1230, 1348, 1435, 1833, 1840
NgoMIV	GCCGGC	1 cut(s)	1116
NlaIV	GGNNCC	2 cut(s)	1273, 1350
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	5 cut(s)	121, 757, 805, 958, 1524
NsbI	TGCGCA	1 cut(s)	1769
NsiI	ATGCAT	1 cut(s)	996
NspI	RCATGY	2 cut(s)	786, 1390
NspV	TTCGAA	2 cut(s)	531, 594
PciI	ACATGT	1 cut(s)	1386
PctI	GAATGC	2 cut(s)	74, 300
PdiI	GCCGGC	1 cut(s)	1118
PdmI	GAANNNNTTC	2 cut(s)	1338, 1474
PfeI	GAWTC	7 cut(s)	149, 452, 1139, 1293, 1610, 1762, 1846
PflFI	GACNNNGTC	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	1465
PkrI	GCNGC	8 cut(s)	115, 131, 139, 187, 278, 478, 1091, 1329
PscI	ACATGT	1 cut(s)	1386
PsiI	TTATAA	1 cut(s)	1724
PspFI	CCCAGC	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	1273, 1350
PspPI	GGNCC	3 cut(s)	261, 1099, 1114
PsuI	RGATCY	2 cut(s)	1348, 1435
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	1180
RsaNI	GTAC	1 cut(s)	1179
RseI	CAYNNNNRTG	2 cut(s)	485, 828
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	6 cut(s)	588, 749, 836, 923, 1440, 1454
SatI	GCNGC	8 cut(s)	114, 130, 138, 186, 277, 477, 1090, 1328
Sau3AI	GATC	8 cut(s)	415, 1108, 1186, 1230, 1348, 1435, 1833, 1840
Sau96I	GGNCC	3 cut(s)	261, 1099, 1114
ScrFI	CCNGG	1 cut(s)	1467
SduI	GDGCHC	2 cut(s)	391, 790
SfaNI	GCATC	1 cut(s)	1639
SfuI	TTCGAA	2 cut(s)	531, 594
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	485, 828
SmlI	CTYRAG	2 cut(s)	1439, 1614
SmoI	CTYRAG	2 cut(s)	1439, 1614
Sse9I	AATT	7 cut(s)	228, 506, 590, 751, 1343, 1479, 1556
SsiI	CCGC	8 cut(s)	43, 114, 129, 138, 286, 476, 547, 918
SspMI	CTAG	3 cut(s)	456, 1193, 1307
StyD4I	CCNGG	1 cut(s)	1465
StyI	CCWWGG	2 cut(s)	363, 480
TaaI	ACNGT	5 cut(s)	22, 265, 568, 1183, 1784
TaiI	ACGT	6 cut(s)	96, 345, 360, 1059, 1324, 1374
TaqI	TCGA	6 cut(s)	90, 222, 324, 531, 594, 1849
TasI	AATT	7 cut(s)	228, 506, 590, 751, 1343, 1479, 1556
TauI	GCSGC	4 cut(s)	116, 132, 140, 479
TfiI	GAWTC	7 cut(s)	149, 452, 1139, 1293, 1610, 1762, 1846
Tru1I	TTAA	6 cut(s)	588, 749, 836, 923, 1440, 1454
Tru9I	TTAA	6 cut(s)	588, 749, 836, 923, 1440, 1454
TscAI	CASTG	2 cut(s)	25, 985
TseFI	GTSAC	5 cut(s)	121, 757, 805, 958, 1524
TseI	GCWGC	4 cut(s)	185, 276, 1089, 1327
Tsp45I	GTSAC	5 cut(s)	121, 757, 805, 958, 1524
TspDTI	ATGAA	8 cut(s)	141, 240, 812, 1275, 1490, 1568, 1811, 1844
TspGWI	ACGGA	5 cut(s)	41, 76, 306, 1314, 1556
TspRI	CASTG	2 cut(s)	25, 985
Tth111I	GACNNNGTC	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	1439
VneI	GTGCAC	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	2 cut(s)	228, 590
XceI	RCATGY	2 cut(s)	786, 1390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmiI	GTMKAC	3 cut(s)	90, 912, 1779
XmnI	GAANNNNTTC	2 cut(s)	1338, 1474
XspI	CTAG	3 cut(s)	456, 1193, 1307
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.