Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Reverse (-)

6351923 .. 6352198

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCATCAAAGTGGGCTTCGTTTGTTTGTGGAAATGAGAAGAGAGGGAGTGAGTGTGGACGACGTTGCCATGGTTTGCTTGTTCAGCGTGTGTGCTCGGTTGGGCAACGTTGAGGTTGGGTTGCAAGGACATGGGTTAGTGGTGAAGGTGGGGTTGAGTTCTAGTGTCAAGTCGTGCAATGCGGTTATGGATATGTATGTCAAGTGTGGCCAGTTGAGTATGGCGAAGAGGGTTTTCAACGAAATGGGGAGCGGAGTGTTGCGTCTTGGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

91

Amino Acids

9.79

Weight (kDa)

8.86

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	55 - 82	8.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	252
AciI	CCGC	2 cut(s)	182, 252
AclI	AACGTT	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	182, 252
BspANI	GGCC	1 cut(s)	210
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	34, 221
BstDSI	CCRYGG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	251
CviAII	CATG	2 cut(s)	70, 131
CviJI	RGCY	2 cut(s)	16, 210
CviKI_1	RGCY	2 cut(s)	16, 210
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	34, 221
EarI	CTCTTC	2 cut(s)	34, 221
Eco130I	CCWWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	73, 134
FaiI	YATR	6 cut(s)	71, 132, 188, 194, 198, 221
FatI	CATG	2 cut(s)	69, 130
FspBI	CTAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	210
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	73, 134
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	2 cut(s)	63, 108
HpyCH4V	TGCA	3 cut(s)	4, 124, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpySE526I	ACGT	2 cut(s)	63, 108
Hsp92II	CATG	2 cut(s)	73, 134
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	1 cut(s)	224
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	63, 108
MbiI	CCGCTC	1 cut(s)	252
MboII	GAAGA	2 cut(s)	51, 238
MhlI	GDGCHC	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	210
MnlI	CCTC	3 cut(s)	37, 106, 222
Mox20I	TGGCCA	1 cut(s)	210
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	69
NlaIII	CATG	2 cut(s)	73, 134
NsiI	ATGCAT	1 cut(s)	6
Psp1406I	AACGTT	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	4 cut(s)	66, 111, 117, 150
SfaNI	GCATC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	9
SsiI	CCGC	2 cut(s)	182, 252
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	2 cut(s)	66, 111
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.