Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Reverse (-)

65843133 .. 65843531

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0528700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTGTAGAGAGGGGTTTCGTCCTGGTCATACGACTTTGGTTAGTTTGGTACCGTCTTGTGGCAGGAATGAGTTAGCTTTTCAGGGGAAATCTGTTCATGGGTTTGGAATTAAGGCTGGCCTTGATTCAGATTCGGAAGTTAAGAATGCTCTTACTTCGATGTATGGTAGATGTGCAGATTTGGAAGCGGCAGAAGTCTTGTTTGAAGAGATTGGTGACAAAAGTGTGGTTTCTTGGAATACTATGATAGGTGCTTATGGCCAAAATGGTTGCTTTGATGAGGCAATGCTTGTGTTTAAACGTATGCGAGAGGAAAATGTGCAAGCCAATCAGGTGACCATGGTAAGCCTTCTGTCAGCAAATGCCGATCCAGAGTCATGGAGAGAGAGGGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

132

Amino Acids

14.47

Weight (kDa)

5.01

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 120	8.4e-12	PPR repeat family
PPR	PF01535	77 - 107	5.3e-11	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	259
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	2 cut(s)	118, 259
Asp718I	GGTACC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	227, 346
BalI	TGGCCA	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	120, 261
BshNI	GGYRCC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	120, 261
Bsp143I	GATC	1 cut(s)	367
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	120, 261
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	118, 324
BstDSI	CCRYGG	1 cut(s)	339
BstEII	GGTNACC	1 cut(s)	334
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	120, 261
BtgI	CCRYGG	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	118, 324
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	3 cut(s)	98, 340, 378
CviJI	RGCY	6 cut(s)	77, 116, 120, 261, 326, 348
CviKI_1	RGCY	6 cut(s)	77, 116, 120, 261, 326, 348
CviQI	GTAC	1 cut(s)	50
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraI	TTTAAA	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	339
Eco91I	GGTNACC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	3 cut(s)	101, 343, 381
FaiI	YATR	8 cut(s)	30, 99, 165, 245, 258, 305, 341, 379
FatI	CATG	3 cut(s)	97, 339, 377
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	120, 261
Hin1II	CATG	3 cut(s)	101, 343, 381
HinfI	GANTC	3 cut(s)	125, 131, 374
HphI	GGTGA	2 cut(s)	227, 346
Hpy188I	TCNGA	2 cut(s)	130, 136
Hpy188III	TCNNGA	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	176, 322
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	101, 343, 381
KpnI	GGTACC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	367
LpnPI	CCDG	7 cut(s)	9, 36, 49, 68, 102, 317, 384
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	215, 334
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	1 cut(s)	108
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	4 cut(s)	4, 274, 304, 381
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	3 cut(s)	111, 141, 297
Msp20I	TGGCCA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	24
MssI	GTTTAAAC	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	3 cut(s)	101, 343, 381
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	215, 334
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	125, 131
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	382
PmeI	GTTTAAAC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	22
PspEI	GGTNACC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	51
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	111, 141, 297
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	4 cut(s)	79, 253, 304, 336
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	158
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	125, 131
Tru1I	TTAA	3 cut(s)	111, 141, 297
Tru9I	TTAA	3 cut(s)	111, 141, 297
TseFI	GTSAC	2 cut(s)	215, 334
Tsp45I	GTSAC	2 cut(s)	215, 334
TspDTI	ATGAA	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.