Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009145

Physical Location & Seq

Genomic Coordinates Reverse (-)

3683710 .. 3684117

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1055600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTTGCTTGTTCAATGCGTGTGCTCGGCCGGGCAATGCTCAAATTGGGGAGCAAGGACATTATTTCGCGGTGAAGGTGGGTTTGGATTCTGGTATCAAGTCCTGCAATGCGGCCATGGATATGTATGTCAAGTGTGGCCAATTGGGTATGGCAAGACGGGTGTTTGAAGTGATGGAGGAGCGGAGTGTAGTGTCGTGGACTGCGATTTTGGACAGTGTTAAATTGGATGGTGTTGGAAATGGGAGAGTGGTGTTTGATCAAATGAATGAGAGAAATGAGGTTCCTTGGACGATCGTGATTGTTGGATATCTAAGGATTGGGCTTATCTGTGAAAGCTTTTCGCTTCTTGAAGAAATGCTTTTCGCTCATTTTTATCAGCATGTGCACAATCCAGCGATAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

136

Amino Acids

15.02

Weight (kDa)

5.75

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15340
fragaria_vesca	FvH4_6g47920
malus_domestica	MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1
prunus_persica	Prupe.3G263400_v2.0.a1
pyrus_communis	pycom111g04650 pycom17g05110
rosa_chinensis	RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141
rosa_laevigata	RLG00000021698
rosa_multiflora	Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083680 Rroxscaffold_2G00083700
rosa_rugosa	Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1
rosa_samantha	Rh2BG606700 Rh2CG577700 Rh2DG618400
rosa_wichuraiana	Rw2G049590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	184
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	71, 113, 184
AcoI	YGGCCR	3 cut(s)	29, 114, 139
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	3 cut(s)	16, 170, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw21I	GWGCWC	2 cut(s)	28, 390
Alw44I	GTGCAC	1 cut(s)	386
AoxI	GGCC	3 cut(s)	29, 114, 139
ApaLI	GTGCAC	1 cut(s)	386
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	28, 390
BccI	CCATC	2 cut(s)	169, 224
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	117, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse3DI	GCAATG	2 cut(s)	43, 115
BseDI	CCNNGG	2 cut(s)	117, 287
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	2 cut(s)	43, 115
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	390
BseX3I	CGGCCG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	2 cut(s)	32, 297
BshFI	GGCC	3 cut(s)	31, 116, 141
BsiEI	CGRYCG	2 cut(s)	32, 297
BsiHKAI	GWGCWC	2 cut(s)	28, 390
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	401
BsnI	GGCC	3 cut(s)	31, 116, 141
Bsp1286I	GDGCHC	2 cut(s)	28, 390
Bsp143I	GATC	2 cut(s)	259, 294
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	3 cut(s)	71, 113, 184
BspANI	GGCC	3 cut(s)	31, 116, 141
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	285
BsrBI	CCGCTC	1 cut(s)	184
BsrDI	GCAATG	2 cut(s)	43, 115
BssECI	CCNNGG	2 cut(s)	117, 287
BssMI	GATC	2 cut(s)	259, 294
BssT1I	CCWWGG	2 cut(s)	117, 287
Bst4CI	ACNGT	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	262, 297
BstMBI	GATC	2 cut(s)	259, 294
BstMCI	CGRYCG	2 cut(s)	32, 297
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	1 cut(s)	71
BstZI	CGGCCG	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	31, 116, 141
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	223
CviAII	CATG	2 cut(s)	118, 383
CviJI	RGCY	5 cut(s)	31, 116, 141, 325, 339
CviKI_1	RGCY	5 cut(s)	31, 116, 141, 325, 339
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	2 cut(s)	261, 296
DpnII	GATC	2 cut(s)	259, 294
EaeI	YGGCCR	3 cut(s)	29, 114, 139
EagI	CGGCCG	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	117, 287
Eco32I	GATATC	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	311
EcoT14I	CCWWGG	2 cut(s)	117, 287
ErhI	CCWWGG	2 cut(s)	117, 287
FaeI	CATG	2 cut(s)	121, 386
FaiI	YATR	5 cut(s)	119, 125, 129, 152, 384
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	2 cut(s)	117, 382
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	31, 116, 141
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	2 cut(s)	121, 386
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	201, 388
Hpy188III	TCNNGA	2 cut(s)	298, 350
Hpy8I	GTNNAC	2 cut(s)	201, 388
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	108, 388
HpyF3I	CTNAG	1 cut(s)	314
Hsp92II	CATG	2 cut(s)	121, 386
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	259, 294
LmnI	GCTCC	2 cut(s)	52, 181
LpnPI	CCDG	3 cut(s)	45, 78, 118
MalI	GATC	2 cut(s)	261, 296
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	2 cut(s)	259, 294
MboII	GAAGA	1 cut(s)	365
MfeI	CAATTG	1 cut(s)	143
MhlI	GDGCHC	2 cut(s)	28, 390
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	3 cut(s)	45, 143, 224
MluNI	TGGCCA	1 cut(s)	141
MmeI	TCCRAC	2 cut(s)	217, 286
MnlI	CCTC	2 cut(s)	172, 274
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	141
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	71
NciI	CCSGG	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	259, 294
NlaIII	CATG	2 cut(s)	121, 386
NlaIV	GGNNCC	1 cut(s)	285
NmeAIII	GCCGAG	1 cut(s)	7
NspI	RCATGY	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	115
Ple19I	CGATCG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	285
PvuI	CGATCG	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	259, 294
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	28, 390
SetI	ASST	3 cut(s)	81, 285, 341
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	45, 143, 224
SsiI	CCGC	3 cut(s)	71, 113, 184
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	2 cut(s)	117, 287
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	3 cut(s)	45, 143, 224
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	223
VneI	GTGCAC	1 cut(s)	386
XceI	RCATGY	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.