Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15340 |
| fragaria_vesca | FvH4_6g47920 |
| malus_domestica | MD09G1055200.v1.1 MD09G1055600.v1.1 MD17G1053300.v1.1 |
| prunus_persica | Prupe.3G263400_v2.0.a1 |
| pyrus_communis | pycom111g04650 pycom17g05110 |
| rosa_chinensis | RchiOBHm_Chr2g0167121 RchiOBHm_Chr2g0167141 |
| rosa_laevigata | RLG00000021698 |
| rosa_multiflora | Rmu_sc0016102.1_g000002 Rmu_sc0033453.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00083680 Rroxscaffold_2G00083700 |
| rosa_rugosa | Rorug02G0528600 Rorug02G0528700 Rorug02G0528900.1 |
| rosa_samantha | Rh2BG606700 Rh2CG577700 Rh2DG618400 |
| rosa_wichuraiana | Rw2G049590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1727, 1821 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 263 |
| Acc16I | TGCGCA | 1 cut(s) | 789 |
| AccB1I | GGYRCC | 1 cut(s) | 1465 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1610 |
| AccI | GTMKAC | 3 cut(s) | 912, 1117, 1782 |
| AccII | CGCG | 1 cut(s) | 76 |
| AciI | CCGC | 8 cut(s) | 43, 129, 138, 186, 211, 286, 1071, 1771 |
| AclI | AACGTT | 1 cut(s) | 402 |
| AclWI | GGATC | 3 cut(s) | 1197, 1446, 1851 |
| AcoI | YGGCCR | 2 cut(s) | 8, 360 |
| AcsI | RAATTY | 1 cut(s) | 228 |
| AcuI | CTGAAG | 1 cut(s) | 1245 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 305, 306, 1610 |
| AflII | CTTAAG | 1 cut(s) | 1442 |
| AflIII | ACRYGT | 2 cut(s) | 888, 1389 |
| AjiI | CACGTC | 1 cut(s) | 358 |
| AjnI | CCWGG | 2 cut(s) | 962, 1468 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 294, 326, 431, 463, 714, 746, 1597, 1629 |
| AleI | CACNNNNGTG | 1 cut(s) | 878 |
| AluBI | AGCT | 7 cut(s) | 106, 217, 1309, 1315, 1663, 1705, 1739 |
| AluI | AGCT | 7 cut(s) | 106, 217, 1309, 1315, 1663, 1705, 1739 |
| Alw21I | GWGCWC | 2 cut(s) | 391, 939 |
| Alw26I | GTCTC | 2 cut(s) | 514, 1426 |
| AlwI | GGATC | 3 cut(s) | 1197, 1446, 1851 |
| Ama87I | CYCGRG | 1 cut(s) | 1096 |
| AoxI | GGCC | 6 cut(s) | 8, 130, 360, 502, 811, 1099 |
| ApeKI | GCWGC | 4 cut(s) | 20, 113, 276, 1089 |
| ApoI | RAATTY | 1 cut(s) | 228 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 556, 588 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 929, 1326, 1341, 1477 |
| AspLEI | GCGC | 2 cut(s) | 78, 790 |
| AspS9I | GGNCC | 2 cut(s) | 261, 1099 |
| AsuHPI | GGTGA | 2 cut(s) | 115, 751 |
| AsuII | TTCGAA | 1 cut(s) | 1345 |
| AvaI | CYCGRG | 1 cut(s) | 1096 |
| AvaII | GGWCC | 1 cut(s) | 261 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1565, 1598 |
| BalI | TGGCCA | 2 cut(s) | 10, 362 |
| BanI | GGYRCC | 1 cut(s) | 1465 |
| Bbv12I | GWGCWC | 2 cut(s) | 391, 939 |
| BbvI | GCAGC | 4 cut(s) | 7, 125, 263, 1101 |
| BccI | CCATC | 4 cut(s) | 265, 532, 572, 1537 |
| BceAI | ACGGC | 2 cut(s) | 307, 798 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 202, 236 |
| BciT130I | CCWGG | 2 cut(s) | 964, 1470 |
| BcoDI | GTCTC | 2 cut(s) | 514, 1426 |
| BfaI | CTAG | 2 cut(s) | 456, 1196 |
| BfrI | CTTAAG | 1 cut(s) | 1442 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1098 |
| BisI | GCNGC | 7 cut(s) | 21, 114, 130, 138, 186, 277, 1090 |
| BlsI | GCNGC | 7 cut(s) | 22, 115, 131, 139, 187, 278, 1091 |
| Bme1390I | CCNGG | 2 cut(s) | 964, 1470 |
| Bme18I | GGWCC | 1 cut(s) | 261 |
| BmeT110I | CYCGRG | 1 cut(s) | 1096 |
| BmgBI | CACGTC | 1 cut(s) | 358 |
| BmgT120I | GGNCC | 2 cut(s) | 261, 1099 |
| BmiI | GGNNCC | 2 cut(s) | 1276, 1467 |
| BmrFI | CCNGG | 2 cut(s) | 964, 1470 |
| BmsI | GCATC | 4 cut(s) | 38, 1151, 1360, 1642 |
| BpmI | CTGGAG | 1 cut(s) | 1685 |
| Bpu14I | TTCGAA | 1 cut(s) | 1345 |
| BpuEI | CTTGAG | 1 cut(s) | 1602 |
| Bsa29I | ATCGAT | 1 cut(s) | 1852 |
| BsaAI | YACGTR | 1 cut(s) | 1555 |
| BsaBI | GATNNNNATC | 2 cut(s) | 860, 1848 |
| BsaJI | CCNNGG | 5 cut(s) | 24, 190, 289, 363, 1300 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 305, 306, 1610 |
| Bse118I | RCCGGY | 1 cut(s) | 125 |
| Bse1I | ACTGG | 3 cut(s) | 263, 1344, 1615 |
| Bse3DI | GCAATG | 2 cut(s) | 478, 996 |
| Bse8I | GATNNNNATC | 2 cut(s) | 860, 1848 |
| BseBI | CCWGG | 2 cut(s) | 964, 1470 |
| BseCI | ATCGAT | 1 cut(s) | 1852 |
| BseDI | CCNNGG | 5 cut(s) | 24, 190, 289, 363, 1300 |
| BseGI | GGATG | 3 cut(s) | 583, 1351, 1570 |
| BseJI | GATNNNNATC | 2 cut(s) | 860, 1848 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 305, 306, 1610 |
| BseMI | GCAATG | 2 cut(s) | 478, 996 |
| BseMII | CTCAG | 2 cut(s) | 627, 1421 |
| BseNI | ACTGG | 3 cut(s) | 263, 1344, 1615 |
| BseRI | GAGGAG | 4 cut(s) | 161, 562, 628, 1682 |
| BseXI | GCAGC | 4 cut(s) | 7, 125, 263, 1101 |
| BseYI | CCCAGC | 2 cut(s) | 394, 1315 |
| Bsh1236I | CGCG | 1 cut(s) | 76 |
| BshFI | GGCC | 6 cut(s) | 10, 132, 362, 504, 813, 1101 |
| BshNI | GGYRCC | 1 cut(s) | 1465 |
| BshVI | ATCGAT | 1 cut(s) | 1852 |
| BsiHKAI | GWGCWC | 2 cut(s) | 391, 939 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1096 |
| BsiSI | CCGG | 2 cut(s) | 126, 1518 |
| BslFI | GGGAC | 1 cut(s) | 1586 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 305, 306, 1610 |
| BsmAI | GTCTC | 2 cut(s) | 514, 1426 |
| BsmBI | CGTCTC | 1 cut(s) | 514 |
| BsmFI | GGGAC | 1 cut(s) | 1586 |
| BsmI | GAATGC | 3 cut(s) | 973, 1326, 1353 |
| BsnI | GGCC | 6 cut(s) | 10, 132, 362, 504, 813, 1101 |
| BsoBI | CYCGRG | 1 cut(s) | 1096 |
| Bsp119I | TTCGAA | 1 cut(s) | 1345 |
| Bsp1286I | GDGCHC | 2 cut(s) | 391, 939 |
| Bsp143I | GATC | 4 cut(s) | 1189, 1366, 1438, 1843 |
| Bsp19I | CCATGG | 2 cut(s) | 190, 363 |
| BspACI | CCGC | 8 cut(s) | 43, 129, 138, 186, 211, 286, 1071, 1771 |
| BspANI | GGCC | 6 cut(s) | 10, 132, 362, 504, 813, 1101 |
| BspCNI | CTCAG | 2 cut(s) | 628, 1422 |
| BspDI | ATCGAT | 1 cut(s) | 1852 |
| BspFNI | CGCG | 1 cut(s) | 76 |
| BspLI | GGNNCC | 2 cut(s) | 1276, 1467 |
| BspPI | GGATC | 3 cut(s) | 1197, 1446, 1851 |
| BspT104I | TTCGAA | 1 cut(s) | 1345 |
| BspT107I | GGYRCC | 1 cut(s) | 1465 |
| BspTI | CTTAAG | 1 cut(s) | 1442 |
| BsrDI | GCAATG | 2 cut(s) | 478, 996 |
| BsrFI | RCCGGY | 1 cut(s) | 125 |
| BsrI | ACTGG | 3 cut(s) | 263, 1344, 1615 |
| BssAI | RCCGGY | 1 cut(s) | 125 |
| BssECI | CCNNGG | 5 cut(s) | 24, 190, 289, 363, 1300 |
| BssMI | GATC | 4 cut(s) | 1189, 1366, 1438, 1843 |
| BssT1I | CCWWGG | 3 cut(s) | 24, 190, 363 |
| Bst2UI | CCWGG | 2 cut(s) | 964, 1470 |
| Bst4CI | ACNGT | 6 cut(s) | 265, 568, 1151, 1640, 1697, 1787 |
| Bst6I | CTCTTC | 4 cut(s) | 328, 528, 717, 1212 |
| BstAFI | CTTAAG | 1 cut(s) | 1442 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 201 |
| BstBAI | YACGTR | 1 cut(s) | 1555 |
| BstBI | TTCGAA | 1 cut(s) | 1345 |
| BstDEI | CTNAG | 4 cut(s) | 636, 977, 1161, 1430 |
| BstDSI | CCRYGG | 4 cut(s) | 190, 289, 363, 1300 |
| BstF5I | GGATG | 3 cut(s) | 583, 1351, 1570 |
| BstFNI | CGCG | 1 cut(s) | 76 |
| BstHHI | GCGC | 2 cut(s) | 78, 790 |
| BstKTI | GATC | 4 cut(s) | 1192, 1369, 1441, 1846 |
| BstMAI | GTCTC | 2 cut(s) | 514, 1426 |
| BstMBI | GATC | 4 cut(s) | 1189, 1366, 1438, 1843 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 26, 201, 210, 285, 839, 1098 |
| BstNI | CCWGG | 2 cut(s) | 964, 1470 |
| BstNSI | RCATGY | 5 cut(s) | 72, 298, 892, 943, 1393 |
| BstSCI | CCNGG | 2 cut(s) | 962, 1468 |
| BstUI | CGCG | 1 cut(s) | 76 |
| BstV1I | GCAGC | 4 cut(s) | 7, 125, 263, 1101 |
| BstX2I | RGATCY | 2 cut(s) | 1189, 1438 |
| BstYI | RGATCY | 2 cut(s) | 1189, 1438 |
| Bsu15I | ATCGAT | 1 cut(s) | 1852 |
| BsuRI | GGCC | 6 cut(s) | 10, 132, 362, 504, 813, 1101 |
| BsuTUI | ATCGAT | 1 cut(s) | 1852 |
| BtgI | CCRYGG | 4 cut(s) | 190, 289, 363, 1300 |
| BtgZI | GCGATG | 1 cut(s) | 15 |
| BtrI | CACGTC | 1 cut(s) | 358 |
| BtsCI | GGATG | 3 cut(s) | 583, 1351, 1570 |
| BtsI | GCAGTG | 4 cut(s) | 202, 849, 885, 915 |
| BtsIMutI | CAGTG | 7 cut(s) | 202, 849, 885, 915, 1427, 1519, 1702 |
| CfoI | GCGC | 2 cut(s) | 78, 790 |
| Cfr10I | RCCGGY | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 2 cut(s) | 261, 1099 |
| ClaI | ATCGAT | 1 cut(s) | 1852 |
| CseI | GACGC | 2 cut(s) | 257, 541 |
| DdeI | CTNAG | 4 cut(s) | 636, 977, 1161, 1430 |
| DpnI | GATC | 4 cut(s) | 1191, 1368, 1440, 1845 |
| DpnII | GATC | 4 cut(s) | 1189, 1366, 1438, 1843 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 263 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 263 |
| EaeI | YGGCCR | 2 cut(s) | 8, 360 |
| Eam1104I | CTCTTC | 4 cut(s) | 328, 528, 717, 1212 |
| EarI | CTCTTC | 4 cut(s) | 328, 528, 717, 1212 |
| Eco130I | CCWWGG | 3 cut(s) | 24, 190, 363 |
| Eco32I | GATATC | 1 cut(s) | 862 |
| Eco47I | GGWCC | 1 cut(s) | 261 |
| Eco57I | CTGAAG | 1 cut(s) | 1245 |
| Eco88I | CYCGRG | 1 cut(s) | 1096 |
| EcoRII | CCWGG | 2 cut(s) | 962, 1468 |
| EcoRV | GATATC | 1 cut(s) | 862 |
| EcoT14I | CCWWGG | 3 cut(s) | 24, 190, 363 |
| EcoT22I | ATGCAT | 2 cut(s) | 996, 1353 |
| ErhI | CCWWGG | 3 cut(s) | 24, 190, 363 |
| Esp3I | CGTCTC | 1 cut(s) | 514 |
| FaqI | GGGAC | 1 cut(s) | 1586 |
| FauI | CCCGC | 2 cut(s) | 218, 293 |
| FblI | GTMKAC | 3 cut(s) | 912, 1117, 1782 |
| Fnu4HI | GCNGC | 7 cut(s) | 21, 114, 130, 138, 186, 277, 1090 |
| FokI | GGATG | 3 cut(s) | 590, 1338, 1577 |
| Fsp4HI | GCNGC | 7 cut(s) | 21, 114, 130, 138, 186, 277, 1090 |
| FspBI | CTAG | 2 cut(s) | 456, 1196 |
| FspI | TGCGCA | 1 cut(s) | 789 |
| GlaI | GCGC | 2 cut(s) | 77, 789 |
| GluI | GCNGC | 7 cut(s) | 21, 114, 130, 138, 186, 277, 1090 |
| GsaI | CCCAGC | 2 cut(s) | 398, 1319 |
| GsuI | CTGGAG | 1 cut(s) | 1685 |
| HaeIII | GGCC | 6 cut(s) | 10, 132, 362, 504, 813, 1101 |
| HapII | CCGG | 2 cut(s) | 126, 1518 |
| HgaI | GACGC | 2 cut(s) | 257, 541 |
| HhaI | GCGC | 2 cut(s) | 78, 790 |
| Hin6I | GCGC | 2 cut(s) | 76, 788 |
| HinP1I | GCGC | 2 cut(s) | 76, 788 |
| HincII | GTYRAC | 3 cut(s) | 886, 1118, 1636 |
| HindII | GTYRAC | 3 cut(s) | 886, 1118, 1636 |
| HindIII | AAGCTT | 1 cut(s) | 104 |
| HinfI | GANTC | 4 cut(s) | 149, 1296, 1765, 1849 |
| HpaII | CCGG | 2 cut(s) | 126, 1518 |
| HphI | GGTGA | 2 cut(s) | 115, 751 |
| Hpy188I | TCNGA | 3 cut(s) | 1017, 1848, 1891 |
| Hpy188III | TCNNGA | 6 cut(s) | 268, 716, 795, 1136, 1231, 1762 |
| Hpy99I | CGWCG | 2 cut(s) | 359, 557 |
| HpyAV | CCTTC | 5 cut(s) | 167, 433, 590, 695, 993 |
| HpyCH4III | ACNGT | 6 cut(s) | 265, 568, 1151, 1640, 1697, 1787 |
| HpyCH4IV | ACGT | 4 cut(s) | 342, 357, 402, 1554 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 26, 201, 210, 285, 839, 1098 |
| HpyF3I | CTNAG | 4 cut(s) | 636, 977, 1161, 1430 |
| HpySE526I | ACGT | 4 cut(s) | 342, 357, 402, 1554 |
| HspAI | GCGC | 2 cut(s) | 76, 788 |
| Kzo9I | GATC | 4 cut(s) | 1189, 1366, 1438, 1843 |
| LmnI | GCTCC | 3 cut(s) | 39, 415, 549 |
| Lsp1109I | GCAGC | 4 cut(s) | 7, 125, 263, 1101 |
| LweI | GCATC | 4 cut(s) | 38, 1151, 1360, 1642 |
| MaeI | CTAG | 2 cut(s) | 456, 1196 |
| MaeII | ACGT | 4 cut(s) | 342, 357, 402, 1554 |
| MaeIII | GTNAC | 4 cut(s) | 757, 958, 1153, 1527 |
| MalI | GATC | 4 cut(s) | 1191, 1368, 1440, 1845 |
| MboI | GATC | 4 cut(s) | 1189, 1366, 1438, 1843 |
| MboII | GAAGA | 6 cut(s) | 345, 545, 704, 731, 1184, 1229 |
| MflI | RGATCY | 2 cut(s) | 1189, 1438 |
| MhlI | GDGCHC | 2 cut(s) | 391, 939 |
| MlsI | TGGCCA | 2 cut(s) | 10, 362 |
| MluCI | AATT | 4 cut(s) | 228, 590, 751, 1830 |
| MluNI | TGGCCA | 2 cut(s) | 10, 362 |
| MlyI | GAGTC | 2 cut(s) | 143, 1305 |
| MmeI | TCCRAC | 1 cut(s) | 1542 |
| Mox20I | TGGCCA | 2 cut(s) | 10, 362 |
| Mph1103I | ATGCAT | 2 cut(s) | 996, 1353 |
| MroXI | GAANNNNTTC | 4 cut(s) | 929, 1326, 1341, 1477 |
| MscI | TGGCCA | 2 cut(s) | 10, 362 |
| MseI | TTAA | 5 cut(s) | 588, 837, 1061, 1236, 1443 |
| MslI | CAYNNNNRTG | 4 cut(s) | 195, 485, 828, 878 |
| Msp20I | TGGCCA | 2 cut(s) | 10, 362 |
| MspCI | CTTAAG | 1 cut(s) | 1442 |
| MspI | CCGG | 2 cut(s) | 126, 1518 |
| MspR9I | CCNGG | 2 cut(s) | 964, 1470 |
| Mva1269I | GAATGC | 3 cut(s) | 973, 1326, 1353 |
| MvaI | CCWGG | 2 cut(s) | 964, 1470 |
| MvnI | CGCG | 1 cut(s) | 76 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 26, 201, 210, 285, 839, 1098 |
| NcoI | CCATGG | 2 cut(s) | 190, 363 |
| NdeII | GATC | 4 cut(s) | 1189, 1366, 1438, 1843 |
| NlaIV | GGNNCC | 2 cut(s) | 1276, 1467 |
| NmeAIII | GCCGAG | 1 cut(s) | 370 |
| NmuCI | GTSAC | 3 cut(s) | 757, 958, 1527 |
| NsbI | TGCGCA | 1 cut(s) | 789 |
| NsiI | ATGCAT | 2 cut(s) | 996, 1353 |
| NspI | RCATGY | 5 cut(s) | 72, 298, 892, 943, 1393 |
| NspV | TTCGAA | 1 cut(s) | 1345 |
| OliI | CACNNNNGTG | 1 cut(s) | 878 |
| PaeI | GCATGC | 2 cut(s) | 72, 298 |
| PciI | ACATGT | 2 cut(s) | 888, 1389 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 800 |
| PctI | GAATGC | 3 cut(s) | 973, 1326, 1353 |
| PdmI | GAANNNNTTC | 4 cut(s) | 929, 1326, 1341, 1477 |
| PfeI | GAWTC | 2 cut(s) | 1765, 1849 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1610 |
| PkrI | GCNGC | 7 cut(s) | 22, 115, 131, 139, 187, 278, 1091 |
| PleI | GAGTC | 2 cut(s) | 143, 1304 |
| PpsI | GAGTC | 2 cut(s) | 143, 1304 |
| Ppu21I | YACGTR | 1 cut(s) | 1555 |
| PscI | ACATGT | 2 cut(s) | 888, 1389 |
| PsiI | TTATAA | 2 cut(s) | 1727, 1821 |
| Psp1406I | AACGTT | 1 cut(s) | 402 |
| Psp6I | CCWGG | 2 cut(s) | 962, 1468 |
| PspFI | CCCAGC | 2 cut(s) | 394, 1315 |
| PspGI | CCWGG | 2 cut(s) | 962, 1468 |
| PspN4I | GGNNCC | 2 cut(s) | 1276, 1467 |
| PspPI | GGNCC | 2 cut(s) | 261, 1099 |
| PsuI | RGATCY | 2 cut(s) | 1189, 1438 |
| RseI | CAYNNNNRTG | 4 cut(s) | 195, 485, 828, 878 |
| SalI | GTCGAC | 1 cut(s) | 1116 |
| SaqAI | TTAA | 5 cut(s) | 588, 837, 1061, 1236, 1443 |
| SatI | GCNGC | 7 cut(s) | 21, 114, 130, 138, 186, 277, 1090 |
| Sau3AI | GATC | 4 cut(s) | 1189, 1366, 1438, 1843 |
| Sau96I | GGNCC | 2 cut(s) | 261, 1099 |
| SchI | GAGTC | 2 cut(s) | 143, 1305 |
| ScrFI | CCNGG | 2 cut(s) | 964, 1470 |
| SduI | GDGCHC | 2 cut(s) | 391, 939 |
| SfaNI | GCATC | 4 cut(s) | 38, 1151, 1360, 1642 |
| SfuI | TTCGAA | 1 cut(s) | 1345 |
| SgrAI | CRCCGGYG | 1 cut(s) | 125 |
| SinI | GGWCC | 1 cut(s) | 261 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 195, 485, 828, 878 |
| SmlI | CTYRAG | 2 cut(s) | 1442, 1617 |
| SmoI | CTYRAG | 2 cut(s) | 1442, 1617 |
| SphI | GCATGC | 2 cut(s) | 72, 298 |
| Sse9I | AATT | 4 cut(s) | 228, 590, 751, 1830 |
| SsiI | CCGC | 8 cut(s) | 43, 129, 138, 186, 211, 286, 1071, 1771 |
| SspMI | CTAG | 2 cut(s) | 456, 1196 |
| StyD4I | CCNGG | 2 cut(s) | 962, 1468 |
| StyI | CCWWGG | 3 cut(s) | 24, 190, 363 |
| TaaI | ACNGT | 6 cut(s) | 265, 568, 1151, 1640, 1697, 1787 |
| TaiI | ACGT | 4 cut(s) | 345, 360, 405, 1557 |
| TaqI | TCGA | 8 cut(s) | 64, 90, 222, 324, 933, 1117, 1345, 1852 |
| TasI | AATT | 4 cut(s) | 228, 590, 751, 1830 |
| TauI | GCSGC | 3 cut(s) | 132, 140, 188 |
| TfiI | GAWTC | 2 cut(s) | 1765, 1849 |
| Tru1I | TTAA | 5 cut(s) | 588, 837, 1061, 1236, 1443 |
| Tru9I | TTAA | 5 cut(s) | 588, 837, 1061, 1236, 1443 |
| TscAI | CASTG | 7 cut(s) | 202, 849, 885, 922, 1434, 1519, 1702 |
| TseFI | GTSAC | 3 cut(s) | 757, 958, 1527 |
| TseI | GCWGC | 4 cut(s) | 20, 113, 276, 1089 |
| Tsp45I | GTSAC | 3 cut(s) | 757, 958, 1527 |
| TspDTI | ATGAA | 8 cut(s) | 240, 452, 759, 812, 969, 1493, 1814, 1847 |
| TspGWI | ACGGA | 3 cut(s) | 41, 686, 1317 |
| TspRI | CASTG | 7 cut(s) | 202, 849, 885, 922, 1434, 1519, 1702 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1610 |
| Vha464I | CTTAAG | 1 cut(s) | 1442 |
| VpaK11BI | GGWCC | 1 cut(s) | 261 |
| XapI | RAATTY | 1 cut(s) | 228 |
| XceI | RCATGY | 5 cut(s) | 72, 298, 892, 943, 1393 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 3 cut(s) | 912, 1117, 1782 |
| XmnI | GAANNNNTTC | 4 cut(s) | 929, 1326, 1341, 1477 |
| XspI | CTAG | 2 cut(s) | 456, 1196 |
| Zsp2I | ATGCAT | 2 cut(s) | 996, 1353 |