Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014294

Physical Location & Seq

Genomic Coordinates Reverse (-)

5342391 .. 5344285

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAAATGCAAGTGAAAGGTGTGCAGGTTGAGGAATTGTATTCCTTGGACTTCAACTCTCTGGATGAAATAAGACCTGTCTATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAATCGTGTTGTCATCACAGAGCCAAACCCGAATTTCTTCTTTGCAAGCCAGATAATCAACAATGCTTGTGCGACCCAAGCGATATTATCAGTCCTCATGAACTCTTCGAGTATTGATATTGGCTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTTCCTCCTGAACTGAAAGGTTTAGCCATCAACAACAATGAGGCAATACGTGCAGCTCACAACACATTTGCCAGGCCTGACCCGTCTTCCATCATGGAAGATGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGATGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCTTAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAATCGAGTGGCTCAGAATGGTCCAACCTGTGGTACAAGAGCAGATTGACCGGTATTCGCAGAATGAGATTCGGTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGAGTATCAAAGAAAGCGAGAGAGGGTTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATACGCTGAGAAAAGCAGTTACGAGGCTCTTGATAGAGAGCTTTCGGAAGTCAATATCGGGATAGAGACTGTTTCACAAAAGATTGTAATGGAGGAGGAGAAATCTAAGAACTGGAAGAAAGAGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAACTTCCTCAAGATTCTTGCTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCACCATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009987 GO:0010016 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048731 GO:0048856 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

334

Amino Acids

38.54

Weight (kDa)

5.08

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	3 - 211	3e-60	Ubiquitin carboxyl-terminal hydrolase, family 1
UCH_C	PF18031	280 - 325	2.1e-19	Ubiquitin carboxyl-terminal hydrolases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65650 AT5G16310
fragaria_vesca	FvH4_4g33330 FvH4_4g33330
malus_domestica	MD13G1018500.v1.1 MD16G1016200.v1.1
prunus_persica	Prupe.1G335400_v2.0.a1 Prupe.1G335400_v2.0.a1
pyrus_communis	pycom13g01570 pycom16g01510
rosa_chinensis	RchiOBHm_Chr4g0442561
rosa_laevigata	RLG00000006002
rosa_multiflora	Rmu_ssc0000204.1_g000045
rosa_roxburghii	Rroxscaffold_5G00383370
rosa_rugosa	Rorug04G0341200
rosa_samantha	Rh4AG393600
rosa_wichuraiana	Rw4G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	67
AccB7I	CCANNNNNTGG	1 cut(s)	616
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	2 cut(s)	208, 335
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	1 cut(s)	621
AfiI	CCNNNNNNNGG	3 cut(s)	134, 512, 616
AgeI	ACCGGT	1 cut(s)	636
AgsI	TTSAA	2 cut(s)	106, 940
AjnI	CCWGG	2 cut(s)	28, 407
AluBI	AGCT	9 cut(s)	392, 449, 498, 529, 674, 707, 770, 817, 973
AluI	AGCT	9 cut(s)	392, 449, 498, 529, 674, 707, 770, 817, 973
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	2 cut(s)	671, 836
AlwI	GGATC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	571
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	4 cut(s)	389, 449, 452, 748
ApoI	RAATTY	2 cut(s)	208, 335
AsiGI	ACCGGT	1 cut(s)	636
Asp700I	GAANNNNTTC	2 cut(s)	212, 323
AspS9I	GGNCC	2 cut(s)	548, 607
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	548, 607
BanII	GRGCYC	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	401, 436, 439, 760
BccI	CCATC	4 cut(s)	371, 434, 506, 527
BciT130I	CCWGG	2 cut(s)	30, 409
BcoDI	GTCTC	2 cut(s)	671, 836
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	2 cut(s)	15, 675
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	4 cut(s)	390, 450, 453, 749
BlpI	GCTNAGC	1 cut(s)	990
BlsI	GCNGC	4 cut(s)	391, 451, 454, 750
Bme1390I	CCNGG	2 cut(s)	30, 409
Bme18I	GGWCC	2 cut(s)	548, 607
BmgT120I	GGNCC	2 cut(s)	548, 607
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	2 cut(s)	30, 409
BpiI	GAAGAC	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	990
BpuEI	CTTGAG	1 cut(s)	932
BsaAI	YACGTR	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 512, 616
Bse118I	RCCGGY	1 cut(s)	636
Bse1I	ACTGG	1 cut(s)	893
Bse3DI	GCAATG	1 cut(s)	984
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	30, 409
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	121, 997
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	3 cut(s)	134, 512, 616
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	4 cut(s)	33, 315, 613, 774
BseNI	ACTGG	1 cut(s)	893
BseRI	GAGGAG	2 cut(s)	884, 887
BseXI	GCAGC	4 cut(s)	401, 436, 439, 760
BsgI	GTGCAG	2 cut(s)	95, 408
BshFI	GGCC	1 cut(s)	412
BshTI	ACCGGT	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	637
BslFI	GGGAC	1 cut(s)	911
BslI	CCNNNNNNNGG	3 cut(s)	134, 512, 616
BsmAI	GTCTC	2 cut(s)	671, 836
BsmFI	GGGAC	1 cut(s)	911
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	1 cut(s)	25
Bsp1720I	GCTNAGC	1 cut(s)	990
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	4 cut(s)	34, 314, 612, 775
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	893
BssAI	RCCGGY	1 cut(s)	636
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	30, 409
Bst4CI	ACNGT	2 cut(s)	567, 847
Bst6I	CTCTTC	2 cut(s)	286, 941
BstACI	GRCGYC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	223, 768
BstDEI	CTNAG	7 cut(s)	42, 301, 599, 670, 783, 882, 990
BstF5I	GGATG	2 cut(s)	121, 997
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	671, 836
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 386, 767
BstNI	CCWGG	2 cut(s)	30, 409
BstSCI	CCNGG	2 cut(s)	28, 407
BstSFI	CTRYAG	2 cut(s)	15, 675
BstV1I	GCAGC	4 cut(s)	401, 436, 439, 760
BstV2I	GAAGAC	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	121, 997
BtsIMutI	CAGTG	2 cut(s)	39, 572
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	223, 768
CaiI	CAGNNNCTG	1 cut(s)	571
CciI	TCATGA	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	548, 607
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	620
CspAI	ACCGGT	1 cut(s)	636
CviAII	CATG	3 cut(s)	274, 430, 904
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	7 cut(s)	42, 301, 599, 670, 783, 882, 990
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DrdI	GACNNNNNNGTC	1 cut(s)	555
DseDI	GACNNNNNNGTC	1 cut(s)	555
Eam1104I	CTCTTC	2 cut(s)	286, 941
EarI	CTCTTC	2 cut(s)	286, 941
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	548, 607
Eco53kI	GAGCTC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	28, 407
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	277, 433, 907
FaiI	YATR	9 cut(s)	50, 135, 275, 431, 523, 525, 702, 905, 924
FaqI	GGGAC	1 cut(s)	911
FatI	CATG	3 cut(s)	273, 429, 903
Fnu4HI	GCNGC	4 cut(s)	390, 450, 453, 749
FokI	GGATG	2 cut(s)	128, 984
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	4 cut(s)	390, 450, 453, 749
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	4 cut(s)	390, 450, 453, 749
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	637
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	277, 433, 907
HinfI	GANTC	5 cut(s)	20, 178, 588, 655, 952
HpaII	CCGG	1 cut(s)	637
HphI	GGTGA	1 cut(s)	587
Hpy188I	TCNGA	5 cut(s)	25, 304, 313, 602, 823
Hpy188III	TCNNGA	8 cut(s)	113, 164, 274, 344, 464, 806, 835, 949
HpyAV	CCTTC	3 cut(s)	539, 578, 903
HpyCH4III	ACNGT	2 cut(s)	567, 847
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	6 cut(s)	61, 76, 221, 389, 748, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 386, 767
HpyF3I	CTNAG	7 cut(s)	42, 301, 599, 670, 783, 882, 990
HpySE526I	ACGT	1 cut(s)	385
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	277, 433, 907
Kzo9I	GATC	1 cut(s)	25
Lsp1109I	GCAGC	4 cut(s)	401, 436, 439, 760
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	5 cut(s)	86, 208, 323, 335, 443
MmeI	TCCRAC	1 cut(s)	634
MroXI	GAANNNNTTC	2 cut(s)	212, 323
MseI	TTAA	2 cut(s)	540, 681
MslI	CAYNNNNRTG	1 cut(s)	921
MspI	CCGG	1 cut(s)	637
MspR9I	CCNGG	2 cut(s)	30, 409
MvaI	CCWGG	2 cut(s)	30, 409
MwoI	GCNNNNNNNGC	3 cut(s)	254, 386, 767
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	277, 433, 907
NlaIV	GGNNCC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	412
PdmI	GAANNNNTTC	2 cut(s)	212, 323
PfeI	GAWTC	5 cut(s)	20, 178, 588, 655, 952
PflFI	GACNNNGTC	1 cut(s)	567
PflMI	CCANNNNNTGG	1 cut(s)	616
PinAI	ACCGGT	1 cut(s)	636
PkrI	GCNGC	4 cut(s)	391, 451, 454, 750
Ppu21I	YACGTR	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	28, 407
PspGI	CCWGG	2 cut(s)	28, 407
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	2 cut(s)	548, 607
PspPPI	RGGWCCY	1 cut(s)	548
PstNI	CAGNNNCTG	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	567
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	921
SacI	GAGCTC	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	540, 681
SatI	GCNGC	4 cut(s)	390, 450, 453, 749
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	2 cut(s)	548, 607
ScrFI	CCNGG	2 cut(s)	30, 409
SduI	GDGCHC	1 cut(s)	531
SfcI	CTRYAG	2 cut(s)	15, 675
SinI	GGWCC	2 cut(s)	548, 607
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	5 cut(s)	86, 208, 323, 335, 443
SseBI	AGGCCT	1 cut(s)	412
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	1 cut(s)	531
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	28, 407
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	567, 847
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	3 cut(s)	284, 531, 591
TasI	AATT	5 cut(s)	86, 208, 323, 335, 443
TfiI	GAWTC	5 cut(s)	20, 178, 588, 655, 952
Tru1I	TTAA	2 cut(s)	540, 681
Tru9I	TTAA	2 cut(s)	540, 681
TscAI	CASTG	2 cut(s)	46, 572
TseI	GCWGC	4 cut(s)	389, 449, 452, 748
TspDTI	ATGAA	3 cut(s)	132, 290, 453
TspRI	CASTG	2 cut(s)	46, 572
Tth111I	GACNNNGTC	1 cut(s)	567
Van91I	CCANNNNNTGG	1 cut(s)	616
VpaK11BI	GGWCC	2 cut(s)	548, 607
XapI	RAATTY	2 cut(s)	208, 335
XbaI	TCTAGA	1 cut(s)	463
XmnI	GAANNNNTTC	2 cut(s)	212, 323
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.