Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014294

Physical Location & Seq

Genomic Coordinates Reverse (-)

1166517 .. 1169054

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1018500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTATATTAGTCGAATTTATAATTTTCGAGAAATTGGAACAGCTGTAGTATACATGAAGTGTACTAGTTTTTTCAAGGTTCTGCTTTGCATTTCAGGGGTGTTCACTGAACTTATTCAGCAGATGCAAGTAAAAGGCGTGCAGGTTGAGGAACTGTATTCATTGGACCTCGATTCTCTGAACAATCTGAGGCCAGTGTATGGTTTGATTTTCCTATTCAAATGGCGTCCAGGGGAAAAGGATGACCGCCTTGTAATTAAGGATCCAAATCCTAATTTGTTTTTCGCAAGCCAGGTCATCAATAATGCTTGTGCAACACAAGCAATTTTGTCTATCCTCATGAACTGTCCGGATGTTGACATTGGTCCTGAACTGTCAAAACTGAAAGAATTTACAAAGAACTTTCCACCTGAACTGAAAGGATTGGCAATAAACAATAGTGAAGCTATCCGTGCAGCCCATAATAGTTTTGCAAGGCCTGAGCCATTTGTTTCTGATGAGCAGAAGGTAGCTGGAAAAGATGATGACGTCTACCATTTTATAAGCTACTTGCCTGTCGATGGAGTCCTGTATGAGCTTGATGGACTGAAGGAGGGACCCATTAGCCTTGGACAGTGCCCCAGCGGGCAAGGTGACATGGAATGGTTGCAGATGGTACAACCTGTAATCCAGGAACGTATTGAAAGGTATTCCAAAAGCGAGATAAGATTCAATCTCTTGGCCATTATCAAGAACAGGAAAGAGATGTATACTGCTGAACTCAAGGAACTCCAAAAGAAGAGGGAGCGTATTTTGCAGCAGCTGTCTGCCTTGCAGCAGGATAGACCAGCTGACGGTAGCAAGTTTGAAGCGCTGAACAAAGCTCTTTCGGAAATCAATGCTGGGATTGAGGGTGCAACAGAGAAGATCTTGATGGAGGAAGAGAAGTTTAAGAAGTGGAGAACAGATAACATTCGCAGGAAGCACAACTACATTCCGTTTCTGTTTAACTTCCTCAAGATTCTTGCCGAGAAGAAGCAGTTGAAGCCGCTTATCGAGAAGGCGAAGCAGAAGGCAGGCAACACTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004843 GO:0004857 GO:0004866 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009892 GO:0009894 GO:0009987 GO:0010016 GO:0010466 GO:0010605 GO:0010951 GO:0016579 GO:0016787 GO:0019222 GO:0019538 GO:0019783 GO:0030162 GO:0030234 GO:0030414 GO:0031011 GO:0031323 GO:0031324 GO:0031329 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033202 GO:0036211 GO:0036459 GO:0042176 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045861 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0061136 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070603 GO:0070628 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0097346 GO:0098772 GO:0101005 GO:0140096 GO:1901564 GO:1902494 GO:1903050 GO:1903362 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

357

Amino Acids

40.9

Weight (kDa)

8.59

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	33 - 228	2.8e-59	Ubiquitin carboxyl-terminal hydrolase, family 1
UCH_C	PF18031	297 - 341	2.1e-19	Ubiquitin carboxyl-terminal hydrolases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65650 AT5G16310
fragaria_vesca	FvH4_4g33330 FvH4_4g33330
malus_domestica	MD13G1018500.v1.1 MD16G1016200.v1.1
prunus_persica	Prupe.1G335400_v2.0.a1 Prupe.1G335400_v2.0.a1
pyrus_communis	pycom13g01570 pycom16g01510
rosa_chinensis	RchiOBHm_Chr4g0442561
rosa_laevigata	RLG00000006002
rosa_multiflora	Rmu_ssc0000204.1_g000045
rosa_roxburghii	Rroxscaffold_5G00383370
rosa_rugosa	Rorug04G0341200
rosa_samantha	Rh4AG393600
rosa_wichuraiana	Rw4G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	21, 542
AatII	GACGTC	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccI	GTMKAC	3 cut(s)	51, 531, 749
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	3 cut(s)	247, 624, 1028
AclWI	GGATC	2 cut(s)	257, 270
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	2 cut(s)	15, 389
AcuI	CTGAAG	1 cut(s)	608
AcyI	GRCGYC	2 cut(s)	226, 528
AfaI	GTAC	2 cut(s)	64, 657
AfeI	AGCGCT	1 cut(s)	852
AfiI	CCNNNNNNNGG	3 cut(s)	200, 560, 833
AgsI	TTSAA	6 cut(s)	76, 220, 683, 712, 848, 1024
AhlI	ACTAGT	1 cut(s)	65
AjnI	CCWGG	3 cut(s)	229, 291, 669
AluBI	AGCT	8 cut(s)	44, 446, 512, 546, 577, 802, 830, 863
AluI	AGCT	8 cut(s)	44, 446, 512, 546, 577, 802, 830, 863
AlwI	GGATC	2 cut(s)	257, 270
AlwNI	CAGNNNCTG	1 cut(s)	802
Aor13HI	TCCGGA	1 cut(s)	349
Aor51HI	AGCGCT	1 cut(s)	852
AoxI	GGCC	3 cut(s)	191, 476, 720
ApeKI	GCWGC	4 cut(s)	455, 796, 799, 814
ApoI	RAATTY	2 cut(s)	15, 389
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	3 cut(s)	166, 365, 596
AsuHPI	GGTGA	1 cut(s)	644
AvaII	GGWCC	3 cut(s)	166, 365, 596
BaeGI	GKGCMC	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	722
BamHI	GGATCC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	953, 985
BbvI	GCAGC	4 cut(s)	467, 808, 811, 826
BccI	CCATC	4 cut(s)	554, 575, 646, 907
BciT130I	CCWGG	3 cut(s)	231, 293, 671
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	2 cut(s)	66, 1065
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	854
BfuAI	ACCTGC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	906
BisI	GCNGC	5 cut(s)	456, 797, 800, 815, 1028
BlsI	GCNGC	5 cut(s)	457, 798, 801, 816, 1029
Bme1390I	CCNGG	3 cut(s)	231, 293, 671
Bme18I	GGWCC	3 cut(s)	166, 365, 596
BmgT120I	GGNCC	3 cut(s)	166, 365, 596
BmiI	GGNNCC	3 cut(s)	264, 597, 598
BmrFI	CCNGG	3 cut(s)	231, 293, 671
BmsI	GCATC	1 cut(s)	114
BoxI	GACNNNNGTC	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	746, 980
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	226, 528
BsaJI	CCNNGG	2 cut(s)	230, 607
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 560, 833
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	3 cut(s)	231, 293, 671
BseDI	CCNNGG	2 cut(s)	230, 607
BseGI	GGATG	2 cut(s)	247, 358
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	200, 560, 833
BseMII	CTCAG	2 cut(s)	179, 471
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	4 cut(s)	467, 808, 811, 826
BseYI	CCCAGC	2 cut(s)	620, 881
BsgI	GTGCAG	2 cut(s)	161, 474
BshFI	GGCC	3 cut(s)	193, 478, 722
BsiSI	CCGG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	3 cut(s)	200, 560, 833
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	3 cut(s)	193, 478, 722
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	262, 906
BspACI	CCGC	3 cut(s)	247, 624, 1028
BspANI	GGCC	3 cut(s)	193, 478, 722
BspCNI	CTCAG	2 cut(s)	180, 472
BspEI	TCCGGA	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	264, 597, 598
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	257, 270
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	230, 607
BssMI	GATC	2 cut(s)	262, 906
BssNAI	GTATAC	2 cut(s)	52, 750
BssNI	GRCGYC	2 cut(s)	226, 528
BssT1I	CCWWGG	1 cut(s)	607
Bst1107I	GTATAC	2 cut(s)	52, 750
Bst2UI	CCWGG	3 cut(s)	231, 293, 671
Bst4CI	ACNGT	5 cut(s)	156, 347, 375, 615, 836
Bst6I	CTCTTC	2 cut(s)	773, 915
BstACI	GRCGYC	2 cut(s)	226, 528
BstC8I	GCNNGC	4 cut(s)	140, 289, 626, 1057
BstDEI	CTNAG	2 cut(s)	188, 480
BstF5I	GGATG	2 cut(s)	247, 358
BstH2I	RGCGCY	1 cut(s)	854
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	2 cut(s)	265, 909
BstMBI	GATC	2 cut(s)	262, 906
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 452, 793, 1024
BstNI	CCWGG	3 cut(s)	231, 293, 671
BstPAI	GACNNNNGTC	1 cut(s)	363
BstSCI	CCNGG	3 cut(s)	229, 291, 669
BstSFI	CTRYAG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	620
BstV1I	GCAGC	4 cut(s)	467, 808, 811, 826
BstX2I	RGATCY	2 cut(s)	262, 906
BstYI	RGATCY	2 cut(s)	262, 906
BstZ17I	GTATAC	2 cut(s)	52, 750
BsuRI	GGCC	3 cut(s)	193, 478, 722
BtsCI	GGATG	2 cut(s)	247, 358
BtsIMutI	CAGTG	3 cut(s)	105, 201, 620
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	4 cut(s)	140, 289, 626, 1057
CaiI	CAGNNNCTG	1 cut(s)	802
CciI	TCATGA	1 cut(s)	339
CfoI	GCGC	1 cut(s)	853
Cfr13I	GGNCC	3 cut(s)	166, 365, 596
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	63, 656
CviAII	CATG	3 cut(s)	55, 340, 637
CviQI	GTAC	2 cut(s)	63, 656
DdeI	CTNAG	2 cut(s)	188, 480
DpnI	GATC	2 cut(s)	264, 908
DpnII	GATC	2 cut(s)	262, 906
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	2 cut(s)	773, 915
EarI	CTCTTC	2 cut(s)	773, 915
Eco130I	CCWWGG	1 cut(s)	607
Eco147I	AGGCCT	1 cut(s)	478
Eco47I	GGWCC	3 cut(s)	166, 365, 596
Eco47III	AGCGCT	1 cut(s)	852
Eco57I	CTGAAG	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	3 cut(s)	229, 291, 669
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	3 cut(s)	58, 343, 640
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	3 cut(s)	54, 339, 636
FauI	CCCGC	1 cut(s)	617
FblI	GTMKAC	3 cut(s)	51, 531, 749
Fnu4HI	GCNGC	5 cut(s)	456, 797, 800, 815, 1028
FokI	GGATG	2 cut(s)	254, 365
Fsp4HI	GCNGC	5 cut(s)	456, 797, 800, 815, 1028
FspBI	CTAG	2 cut(s)	66, 1065
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	5 cut(s)	456, 797, 800, 815, 1028
GsaI	CCCAGC	2 cut(s)	624, 885
HaeII	RGCGCY	1 cut(s)	854
HaeIII	GGCC	3 cut(s)	193, 478, 722
HapII	CCGG	1 cut(s)	350
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	853
Hin1I	GRCGYC	2 cut(s)	226, 528
Hin1II	CATG	3 cut(s)	58, 343, 640
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	4 cut(s)	173, 564, 708, 1000
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	6 cut(s)	52, 63, 105, 358, 532, 750
Hpy188I	TCNGA	4 cut(s)	180, 189, 496, 871
Hpy188III	TCNNGA	8 cut(s)	29, 340, 350, 368, 730, 910, 997, 1036
Hpy8I	GTNNAC	6 cut(s)	52, 63, 105, 358, 532, 750
HpyAV	CCTTC	4 cut(s)	499, 583, 1033, 1045
HpyCH4III	ACNGT	5 cut(s)	156, 347, 375, 615, 836
HpyCH4IV	ACGT	2 cut(s)	528, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 452, 793, 1024
HpyF3I	CTNAG	2 cut(s)	188, 480
HpySE526I	ACGT	2 cut(s)	528, 676
Hsp92I	GRCGYC	2 cut(s)	226, 528
Hsp92II	CATG	3 cut(s)	58, 343, 640
HspAI	GCGC	1 cut(s)	851
KflI	GGGWCCC	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	262, 906
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	4 cut(s)	467, 808, 811, 826
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	66, 1065
MaeII	ACGT	2 cut(s)	528, 676
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	2 cut(s)	264, 908
MboI	GATC	2 cut(s)	262, 906
MboII	GAAGA	4 cut(s)	790, 916, 932, 1024
MflI	RGATCY	2 cut(s)	262, 906
MhlI	GDGCHC	1 cut(s)	620
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	7 cut(s)	15, 22, 33, 255, 274, 324, 389
MluNI	TGGCCA	1 cut(s)	722
MlyI	GAGTC	1 cut(s)	573
MnlI	CCTC	9 cut(s)	142, 179, 183, 347, 586, 774, 883, 910, 1004
Mox20I	TGGCCA	1 cut(s)	722
MroI	TCCGGA	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	3 cut(s)	258, 930, 987
Msp20I	TGGCCA	1 cut(s)	722
MspA1I	CMGCKG	4 cut(s)	44, 624, 802, 830
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	3 cut(s)	231, 293, 671
MvaI	CCWGG	3 cut(s)	231, 293, 671
MwoI	GCNNNNNNNGC	4 cut(s)	320, 452, 793, 1024
NdeII	GATC	2 cut(s)	262, 906
NlaIII	CATG	3 cut(s)	58, 343, 640
NlaIV	GGNNCC	3 cut(s)	264, 597, 598
NmeAIII	GCCGAG	1 cut(s)	1033
NmuCI	GTSAC	1 cut(s)	632
PagI	TCATGA	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	173, 708, 1000
PflMI	CCANNNNNTGG	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	5 cut(s)	457, 798, 801, 816, 1029
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	596
PshAI	GACNNNNGTC	1 cut(s)	363
PsiI	TTATAA	2 cut(s)	21, 542
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	3 cut(s)	229, 291, 669
PspFI	CCCAGC	2 cut(s)	620, 881
PspGI	CCWGG	3 cut(s)	229, 291, 669
PspN4I	GGNNCC	3 cut(s)	264, 597, 598
PspPI	GGNCC	3 cut(s)	166, 365, 596
PspPPI	RGGWCCY	1 cut(s)	596
PstNI	CAGNNNCTG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	262, 906
PvuII	CAGCTG	3 cut(s)	44, 802, 830
RsaI	GTAC	2 cut(s)	64, 657
RsaNI	GTAC	2 cut(s)	63, 656
SaqAI	TTAA	3 cut(s)	258, 930, 987
SatI	GCNGC	5 cut(s)	456, 797, 800, 815, 1028
Sau3AI	GATC	2 cut(s)	262, 906
Sau96I	GGNCC	3 cut(s)	166, 365, 596
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	3 cut(s)	231, 293, 671
SduI	GDGCHC	1 cut(s)	620
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	3 cut(s)	166, 365, 596
SmlI	CTYRAG	2 cut(s)	761, 995
SmoI	CTYRAG	2 cut(s)	761, 995
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	7 cut(s)	15, 22, 33, 255, 274, 324, 389
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	3 cut(s)	247, 624, 1028
SspMI	CTAG	2 cut(s)	66, 1065
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	3 cut(s)	229, 291, 669
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	5 cut(s)	156, 347, 375, 615, 836
TaiI	ACGT	2 cut(s)	531, 679
TaqI	TCGA	5 cut(s)	13, 28, 171, 558, 1035
TasI	AATT	7 cut(s)	15, 22, 33, 255, 274, 324, 389
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	1030
TfiI	GAWTC	3 cut(s)	173, 708, 1000
Tru1I	TTAA	3 cut(s)	258, 930, 987
Tru9I	TTAA	3 cut(s)	258, 930, 987
TscAI	CASTG	3 cut(s)	112, 201, 620
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	4 cut(s)	455, 796, 799, 814
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	3 cut(s)	71, 150, 356
TspGWI	ACGGA	2 cut(s)	440, 966
TspRI	CASTG	3 cut(s)	112, 201, 620
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	3 cut(s)	166, 365, 596
XapI	RAATTY	2 cut(s)	15, 389
XmiI	GTMKAC	3 cut(s)	51, 531, 749
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	2 cut(s)	66, 1065
ZraI	GACGTC	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.