pycom16g01510

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014294
Physical Location & Seq
Reverse (-)
931248 .. 932520
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01510.3

Sequence Viewer

Length: 948 bp
ATGCAAGTAAAAGGCGTGCAGGTTGAGGAGCTGTATTCATTGGACCTTGATTCTCTGAACAATCTGAGGCCAGTGTATGGTTTAATTTTCCTATTCAAATGGCGCCCAGGGGATAAGGATGACCGCCTTGTAATTAAGGATCCAAATCCTAATTTGTTTTTCGCAAGCCAGGTTATTAATAATGCATGTGCAACCCAAGCAATCTTGTCTATCCTCTTGAACTGTCCGGACGTTGACATTGGTCCTGAACTGTCGAAACTGAAAGAATTTACGAAGAACTTTCCACCTGAACTGAAAGGATTGGCAATAAACAATAGTGAAGCTATCCGTGCAGCTCATAATAGTTTTGCCAGGCCTGAGCCGTTTGTTTCTGATGAGAAGAAGGTAGCTGACAAAGATGATGATGTCTACCATTTTATAAGCTACTTGCCTGTGGATGGAGTCCTGTATGAGCTTGATGGACTGAAGGAGGGGCCCATTAGCCTTGGACAGTGCCCCAGCGGGCAAGGTGACATGGAATGGCTGCAGATGGTGCAACCTGTAATCCAGGAACGCATCGAAAGGTATTCCAAAAGTGAGATAAGGTTCAATCTCTTGGCCATTATCAAGAACAGGAAGGAGATGTATACTGCTGAGCTCAAGGAACTGCAAAAGAAGAGGGAGCGTATTTTGCAGCAGCTGTCTGCCTTACAGCAAGAGAGAGCAGCCGACGGGAGCAAGTTTGAAGCGCTGAACAAAGCTCTTTCGGAAATCAATGCTGGGATCGAGGGTGCCACCGAGAAGATCTTGATGGAAGAAGAGAAATTTAAGAAGTGGAGAACAGAGAACATTCGCAGGAAGCACAACTACATTCCATTTCTGTTTAACTTCCTCAAGATTCTTGCCGAGAAGAAGCAGTTGAAGCCTCTTATTGAGAAGGCGAAGCAGAAGGCAGGCAACACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004843 GO:0004857 GO:0004866 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009892 GO:0009894 GO:0009987 GO:0010016 GO:0010466 GO:0010605 GO:0010951 GO:0016579 GO:0016787 GO:0019222 GO:0019538 GO:0019783 GO:0030162 GO:0030234 GO:0030414 GO:0031011 GO:0031323 GO:0031324 GO:0031329 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033202 GO:0036211 GO:0036459 GO:0042176 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045861 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0061136 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070603 GO:0070628 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0097346 GO:0098772 GO:0101005 GO:0140096 GO:1901564 GO:1902494 GO:1903050 GO:1903362 GO:1904949
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C12

Protein Analysis

316

Amino Acids

36.14

Weight (kDa)

8.22

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65650 AT5G16310
fragaria_vesca FvH4_4g33330 FvH4_4g33330
malus_domestica MD13G1018500.v1.1 MD16G1016200.v1.1
prunus_persica Prupe.1G335400_v2.0.a1 Prupe.1G335400_v2.0.a1
pyrus_communis pycom13g01570 pycom16g01510
rosa_chinensis RchiOBHm_Chr4g0442561
rosa_laevigata RLG00000006002
rosa_multiflora Rmu_ssc0000204.1_g000045
rosa_roxburghii Rroxscaffold_5G00383370
rosa_rugosa Rorug04G0341200
rosa_samantha Rh4AG393600
rosa_wichuraiana Rw4G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 10
AccB1I GGYRCC 2 cut(s) 102, 770
AccB7I CCANNNNNTGG 1 cut(s) 77
AccI GTMKAC 2 cut(s) 408, 626
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 2 cut(s) 124, 501
AclWI GGATC 3 cut(s) 134, 147, 770
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 2 cut(s) 266, 803
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 103
AfeI AGCGCT 1 cut(s) 729
AfiI CCNNNNNNNGG 2 cut(s) 77, 437
AgsI TTSAA 5 cut(s) 97, 220, 589, 725, 901
AjnI CCWGG 4 cut(s) 106, 168, 350, 546
AluBI AGCT 9 cut(s) 31, 323, 335, 389, 423, 454, 637, 679, 740
AluI AGCT 9 cut(s) 31, 323, 335, 389, 423, 454, 637, 679, 740
Alw21I GWGCWC 1 cut(s) 639
AlwI GGATC 3 cut(s) 134, 147, 770
AlwNI CAGNNNCTG 1 cut(s) 679
Aor13HI TCCGGA 1 cut(s) 226
Aor51HI AGCGCT 1 cut(s) 729
AoxI GGCC 4 cut(s) 68, 353, 473, 597
ApaI GGGCCC 1 cut(s) 477
ApeKI GCWGC 5 cut(s) 332, 523, 673, 676, 704
ApoI RAATTY 2 cut(s) 266, 803
AseI ATTAAT 1 cut(s) 177
AspLEI GCGC 2 cut(s) 105, 730
AspS9I GGNCC 4 cut(s) 43, 242, 473, 474
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 2 cut(s) 43, 242
BaeGI GKGCMC 2 cut(s) 477, 497
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 2 cut(s) 102, 770
BanII GRGCYC 2 cut(s) 477, 639
BarI GAAGNNNNNNTAC 2 cut(s) 830, 862
Bbv12I GWGCWC 1 cut(s) 639
BbvI GCAGC 5 cut(s) 344, 510, 685, 688, 716
BccI CCATC 4 cut(s) 431, 452, 523, 784
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 4 cut(s) 108, 170, 352, 548
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 2 cut(s) 106, 731
BfuAI ACCTGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 783
BisI GCNGC 5 cut(s) 333, 524, 674, 677, 705
BlpI GCTNAGC 1 cut(s) 633
BlsI GCNGC 5 cut(s) 334, 525, 675, 678, 706
Bme1390I CCNGG 4 cut(s) 108, 170, 352, 548
Bme18I GGWCC 2 cut(s) 43, 242
BmgT120I GGNCC 4 cut(s) 43, 242, 473, 474
BmiI GGNNCC 5 cut(s) 104, 141, 474, 475, 772
BmrFI CCNGG 4 cut(s) 108, 170, 352, 548
BmsI GCATC 1 cut(s) 564
BoxI GACNNNNGTC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 633
BpuEI CTTGAG 2 cut(s) 623, 857
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 106, 107, 484
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 437
Bse1I ACTGG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 4 cut(s) 108, 170, 352, 548
BseDI CCNNGG 3 cut(s) 106, 107, 484
BseGI GGATG 2 cut(s) 124, 442
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 77, 437
BseMII CTCAG 3 cut(s) 56, 348, 624
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 477, 497
BseXI GCAGC 5 cut(s) 344, 510, 685, 688, 716
BseYI CCCAGC 2 cut(s) 497, 758
BsgI GTGCAG 2 cut(s) 38, 351
BshFI GGCC 4 cut(s) 70, 355, 475, 599
BshNI GGYRCC 2 cut(s) 102, 770
BsiHKAI GWGCWC 1 cut(s) 639
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 77, 437
BsnI GGCC 4 cut(s) 70, 355, 475, 599
Bsp120I GGGCCC 1 cut(s) 473
Bsp1286I GDGCHC 3 cut(s) 477, 497, 639
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 3 cut(s) 139, 762, 783
Bsp1720I GCTNAGC 1 cut(s) 633
BspACI CCGC 2 cut(s) 124, 501
BspANI GGCC 4 cut(s) 70, 355, 475, 599
BspCNI CTCAG 3 cut(s) 57, 349, 625
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 5 cut(s) 104, 141, 474, 475, 772
BspMAI CTGCAG 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 10
BspPI GGATC 3 cut(s) 134, 147, 770
BspT107I GGYRCC 2 cut(s) 102, 770
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 106, 107, 484
BssMI GATC 3 cut(s) 139, 762, 783
BssNAI GTATAC 1 cut(s) 627
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 484
Bst1107I GTATAC 1 cut(s) 627
Bst2UI CCWGG 4 cut(s) 108, 170, 352, 548
Bst4CI ACNGT 3 cut(s) 224, 252, 492
Bst6I CTCTTC 2 cut(s) 650, 792
BstACI GRCGYC 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 17, 166, 503, 934
BstDEI CTNAG 3 cut(s) 65, 357, 633
BstF5I GGATG 2 cut(s) 124, 442
BstH2I RGCGCY 2 cut(s) 106, 731
BstHHI GCGC 2 cut(s) 105, 730
BstKTI GATC 3 cut(s) 142, 765, 786
BstMBI GATC 3 cut(s) 139, 762, 783
BstMWI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
BstNI CCWGG 4 cut(s) 108, 170, 352, 548
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 4 cut(s) 106, 168, 350, 546
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 2 cut(s) 477, 497
BstV1I GCAGC 5 cut(s) 344, 510, 685, 688, 716
BstX2I RGATCY 2 cut(s) 139, 783
BstYI RGATCY 2 cut(s) 139, 783
BstZ17I GTATAC 1 cut(s) 627
BsuRI GGCC 4 cut(s) 70, 355, 475, 599
BtsCI GGATG 2 cut(s) 124, 442
BtsIMutI CAGTG 2 cut(s) 78, 497
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 4 cut(s) 17, 166, 503, 934
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 2 cut(s) 105, 730
Cfr13I GGNCC 4 cut(s) 43, 242, 473, 474
CviAII CATG 2 cut(s) 186, 514
DdeI CTNAG 3 cut(s) 65, 357, 633
DinI GGCGCC 1 cut(s) 104
DpnI GATC 3 cut(s) 141, 764, 785
DpnII GATC 3 cut(s) 139, 762, 783
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 2 cut(s) 650, 792
EarI CTCTTC 2 cut(s) 650, 792
Ecl136II GAGCTC 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 484
Eco147I AGGCCT 1 cut(s) 355
Eco24I GRGCYC 2 cut(s) 477, 639
Eco47I GGWCC 2 cut(s) 43, 242
Eco47III AGCGCT 1 cut(s) 729
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 637
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 4 cut(s) 106, 168, 350, 546
EcoT14I CCWWGG 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 2 cut(s) 477, 639
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 2 cut(s) 189, 517
FaiI YATR 7 cut(s) 78, 187, 339, 419, 450, 515, 627
FatI CATG 2 cut(s) 185, 513
FauI CCCGC 1 cut(s) 494
FblI GTMKAC 2 cut(s) 408, 626
Fnu4HI GCNGC 5 cut(s) 333, 524, 674, 677, 705
FokI GGATG 2 cut(s) 131, 449
FriOI GRGCYC 2 cut(s) 477, 639
Fsp4HI GCNGC 5 cut(s) 333, 524, 674, 677, 705
GlaI GCGC 2 cut(s) 104, 729
GluI GCNGC 5 cut(s) 333, 524, 674, 677, 705
GsaI CCCAGC 2 cut(s) 501, 762
HaeII RGCGCY 2 cut(s) 106, 731
HaeIII GGCC 4 cut(s) 70, 355, 475, 599
HapII CCGG 1 cut(s) 227
HhaI GCGC 2 cut(s) 105, 730
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 2 cut(s) 189, 517
Hin6I GCGC 2 cut(s) 103, 728
HinP1I GCGC 2 cut(s) 103, 728
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 50, 441, 877
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 3 cut(s) 235, 409, 627
Hpy188I TCNGA 4 cut(s) 57, 66, 373, 748
Hpy188III TCNNGA 6 cut(s) 217, 227, 245, 607, 787, 874
Hpy8I GTNNAC 3 cut(s) 235, 409, 627
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 5 cut(s) 376, 460, 610, 910, 922
HpyCH4III ACNGT 3 cut(s) 224, 252, 492
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 9 cut(s) 4, 19, 185, 191, 332, 526, 535, 649, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
HpyF3I CTNAG 3 cut(s) 65, 357, 633
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 2 cut(s) 189, 517
HspAI GCGC 2 cut(s) 103, 728
KasI GGCGCC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 139, 762, 783
LmnI GCTCC 3 cut(s) 28, 661, 714
Lsp1109I GCAGC 5 cut(s) 344, 510, 685, 688, 716
LweI GCATC 1 cut(s) 564
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 141, 764, 785
MboI GATC 3 cut(s) 139, 762, 783
MboII GAAGA 7 cut(s) 286, 391, 667, 793, 806, 809, 901
MflI RGATCY 2 cut(s) 139, 783
MhlI GDGCHC 3 cut(s) 477, 497, 639
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 5 cut(s) 84, 132, 151, 266, 803
MluNI TGGCCA 1 cut(s) 599
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 450
MnlI CCTC 8 cut(s) 19, 60, 224, 463, 651, 760, 881, 915
Mox20I TGGCCA 1 cut(s) 599
Mph1103I ATGCAT 1 cut(s) 187
MroI TCCGGA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 599
MseI TTAA 5 cut(s) 83, 135, 177, 807, 864
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 501, 679
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 4 cut(s) 108, 170, 352, 548
MvaI CCWGG 4 cut(s) 108, 170, 352, 548
MwoI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
NarI GGCGCC 1 cut(s) 103
NdeII GATC 3 cut(s) 139, 762, 783
NlaIII CATG 2 cut(s) 189, 517
NlaIV GGNNCC 5 cut(s) 104, 141, 474, 475, 772
NmeAIII GCCGAG 1 cut(s) 910
NmuCI GTSAC 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 189
PasI CCCWGGG 1 cut(s) 107
PceI AGGCCT 1 cut(s) 355
PfeI GAWTC 2 cut(s) 50, 877
PflMI CCANNNNNTGG 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 5 cut(s) 334, 525, 675, 678, 706
PleI GAGTC 1 cut(s) 449
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 449
PshAI GACNNNNGTC 1 cut(s) 240
PshBI ATTAAT 1 cut(s) 177
PsiI TTATAA 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 4 cut(s) 106, 168, 350, 546
PspFI CCCAGC 2 cut(s) 497, 758
PspGI CCWGG 4 cut(s) 106, 168, 350, 546
PspN4I GGNNCC 5 cut(s) 104, 141, 474, 475, 772
PspOMI GGGCCC 1 cut(s) 473
PspPI GGNCC 4 cut(s) 43, 242, 473, 474
PstI CTGCAG 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 139, 783
PvuII CAGCTG 1 cut(s) 679
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 5 cut(s) 83, 135, 177, 807, 864
SatI GCNGC 5 cut(s) 333, 524, 674, 677, 705
Sau3AI GATC 3 cut(s) 139, 762, 783
Sau96I GGNCC 4 cut(s) 43, 242, 473, 474
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 4 cut(s) 108, 170, 352, 548
SduI GDGCHC 3 cut(s) 477, 497, 639
SfaNI GCATC 1 cut(s) 564
SfcI CTRYAG 1 cut(s) 524
SfoI GGCGCC 1 cut(s) 104
SinI GGWCC 2 cut(s) 43, 242
SmlI CTYRAG 2 cut(s) 638, 872
SmoI CTYRAG 2 cut(s) 638, 872
Sse9I AATT 5 cut(s) 84, 132, 151, 266, 803
SseBI AGGCCT 1 cut(s) 355
SsiI CCGC 2 cut(s) 124, 501
SspDI GGCGCC 1 cut(s) 102
SstI GAGCTC 1 cut(s) 639
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 4 cut(s) 106, 168, 350, 546
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 3 cut(s) 224, 252, 492
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 254, 558, 765
TasI AATT 5 cut(s) 84, 132, 151, 266, 803
TfiI GAWTC 2 cut(s) 50, 877
Tru1I TTAA 5 cut(s) 83, 135, 177, 807, 864
Tru9I TTAA 5 cut(s) 83, 135, 177, 807, 864
TscAI CASTG 2 cut(s) 78, 497
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 5 cut(s) 332, 523, 673, 676, 704
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 78, 497
Van91I CCANNNNNTGG 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 43, 242
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 2 cut(s) 266, 803
XceI RCATGY 1 cut(s) 189
XmiI GTMKAC 2 cut(s) 408, 626
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.