Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014294

Physical Location & Seq

Genomic Coordinates Reverse (-)

1032386 .. 1033798

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01570.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAAGTAAAAGGTGTGCAGGTTGAGGAACTGTATTCATTGGACCTTGATTCTCTGAACAATCTGAGGCCAGTGTATGGTTTGATTTTCCTATTCAAATGGCGTCCAGGGGAAAAGGATGACCGCCTTGTAATTAAGGATCCAAATCCTAATTTGTTTTTCGCAAGCCAGGTCATCAATAATGCTTGTGCAACCCAAGCAATCTTGTCTATCCTCATGAACTGTCCAGATGTTGACACTGGTCCTGAACTGTCAAAACTGAAAGAATTTACGAAGAACTTTCCACCTGAACTGAAAGGATTGGCAATAAACAATAGTGAAGCCATCCGTGCCGCCCATAATAGTTTTGCAAGGCCTGAGCCATTTGTTTCTGATGAGCAGAAGGTAGCTGGAAAAGATGATGACGTCTACCATTTTATAAGCTACTTGCCTGTCGATGGAGTCCTGTACGAGCTTGATGGACTGAAGGAGGGACCCATTAGCCTTGGACAGTGCCCCAGCGGGCAAGGTGACATGGAATGGTTGCAGATGGTACAACCTGTAATCCAGGAACGTATTGAAAGGTATTCCAAAAGCGAGATAAGATTCAATCTCTTGGCCATTATCAAGAACAGGAAAGAGATGTATACTGCTGAACTCAAGGAACTCCAAAAGAAGAGGGAGCGAATTTTGCAGCAGCTGTCTGCCTCACAGCAAGATAGACCAGCTGACAGTAGCAAGTTTGAAGCGCTGAACAAAGCTCTTTCGGAAATCAATGCTGGGATTGAGGGTGCAACAGAGAAGATCTTGATGGAGGAAGAGAAGTTTAAGAAGTGGAGAACAGAGAACATTCGCAGGAAGCACAACTACATTCCGTTTCTGTTTAACTTCCTCAAGATTCTTGCCGAGAAGAAGCAGTTGAAGCCGCTTATTGAGAAGGCAAAGCAGAAGGCAGGCAACACTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004843 GO:0004857 GO:0004866 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009892 GO:0009894 GO:0009987 GO:0010016 GO:0010466 GO:0010605 GO:0010951 GO:0016579 GO:0016787 GO:0019222 GO:0019538 GO:0019783 GO:0030162 GO:0030234 GO:0030414 GO:0031011 GO:0031323 GO:0031324 GO:0031329 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033202 GO:0036211 GO:0036459 GO:0042176 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045861 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0061136 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070603 GO:0070628 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0097346 GO:0098772 GO:0101005 GO:0140096 GO:1901564 GO:1902494 GO:1903050 GO:1903362 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

316

Amino Acids

36.11

Weight (kDa)

8.23

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65650 AT5G16310
fragaria_vesca	FvH4_4g33330 FvH4_4g33330
malus_domestica	MD13G1018500.v1.1 MD16G1016200.v1.1
prunus_persica	Prupe.1G335400_v2.0.a1 Prupe.1G335400_v2.0.a1
pyrus_communis	pycom13g01570 pycom16g01510
rosa_chinensis	RchiOBHm_Chr4g0442561
rosa_laevigata	RLG00000006002
rosa_multiflora	Rmu_ssc0000204.1_g000045
rosa_roxburghii	Rroxscaffold_5G00383370
rosa_rugosa	Rorug04G0341200
rosa_samantha	Rh4AG393600
rosa_wichuraiana	Rw4G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AatII	GACGTC	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccI	GTMKAC	2 cut(s)	408, 626
AciI	CCGC	4 cut(s)	124, 333, 501, 905
AclWI	GGATC	2 cut(s)	134, 147
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	2 cut(s)	266, 666
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	2 cut(s)	103, 405
AfaI	GTAC	2 cut(s)	449, 534
AfeI	AGCGCT	1 cut(s)	729
AfiI	CCNNNNNNNGG	2 cut(s)	77, 437
AgsI	TTSAA	5 cut(s)	97, 560, 589, 725, 901
AjnI	CCWGG	3 cut(s)	106, 168, 546
AluBI	AGCT	6 cut(s)	389, 423, 454, 679, 707, 740
AluI	AGCT	6 cut(s)	389, 423, 454, 679, 707, 740
AlwI	GGATC	2 cut(s)	134, 147
AlwNI	CAGNNNCTG	1 cut(s)	679
Aor51HI	AGCGCT	1 cut(s)	729
AoxI	GGCC	3 cut(s)	68, 353, 597
ApeKI	GCWGC	2 cut(s)	673, 676
ApoI	RAATTY	2 cut(s)	266, 666
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	3 cut(s)	43, 242, 473
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	3 cut(s)	43, 242, 473
BaeGI	GKGCMC	1 cut(s)	497
BalI	TGGCCA	1 cut(s)	599
BamHI	GGATCC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	830, 862
BbvI	GCAGC	2 cut(s)	685, 688
BccI	CCATC	5 cut(s)	332, 431, 452, 523, 784
BciT130I	CCWGG	3 cut(s)	108, 170, 548
BfaI	CTAG	1 cut(s)	942
BfoI	RGCGCY	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	783
BisI	GCNGC	4 cut(s)	333, 674, 677, 905
BlsI	GCNGC	4 cut(s)	334, 675, 678, 906
Bme1390I	CCNGG	3 cut(s)	108, 170, 548
Bme18I	GGWCC	3 cut(s)	43, 242, 473
BmgT120I	GGNCC	3 cut(s)	43, 242, 473
BmiI	GGNNCC	3 cut(s)	141, 474, 475
BmrFI	CCNGG	3 cut(s)	108, 170, 548
BoxI	GACNNNNGTC	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	623, 857
BsaBI	GATNNNNATC	1 cut(s)	144
BsaHI	GRCGYC	2 cut(s)	103, 405
BsaJI	CCNNGG	2 cut(s)	107, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 437
Bse1I	ACTGG	2 cut(s)	71, 244
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	3 cut(s)	108, 170, 548
BseDI	CCNNGG	2 cut(s)	107, 484
BseGI	GGATG	2 cut(s)	124, 324
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	77, 437
BseMII	CTCAG	2 cut(s)	56, 348
BseNI	ACTGG	2 cut(s)	71, 244
BseSI	GKGCMC	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	685, 688
BseYI	CCCAGC	2 cut(s)	497, 758
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	70, 355, 599
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	77, 437
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	3 cut(s)	70, 355, 599
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	139, 783
BspACI	CCGC	4 cut(s)	124, 333, 501, 905
BspANI	GGCC	3 cut(s)	70, 355, 599
BspCNI	CTCAG	2 cut(s)	57, 349
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	3 cut(s)	141, 474, 475
BspMI	ACCTGC	1 cut(s)	10
BspPI	GGATC	2 cut(s)	134, 147
BsrI	ACTGG	2 cut(s)	71, 244
BssECI	CCNNGG	2 cut(s)	107, 484
BssMI	GATC	2 cut(s)	139, 783
BssNAI	GTATAC	1 cut(s)	627
BssNI	GRCGYC	2 cut(s)	103, 405
BssT1I	CCWWGG	1 cut(s)	484
Bst1107I	GTATAC	1 cut(s)	627
Bst2UI	CCWGG	3 cut(s)	108, 170, 548
Bst4CI	ACNGT	5 cut(s)	33, 224, 252, 492, 713
Bst6I	CTCTTC	2 cut(s)	650, 792
BstACI	GRCGYC	2 cut(s)	103, 405
BstC8I	GCNNGC	3 cut(s)	166, 503, 934
BstDEI	CTNAG	2 cut(s)	65, 357
BstF5I	GGATG	2 cut(s)	124, 324
BstH2I	RGCGCY	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	2 cut(s)	142, 786
BstMBI	GATC	2 cut(s)	139, 783
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 329, 670, 901
BstNI	CCWGG	3 cut(s)	108, 170, 548
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	3 cut(s)	106, 168, 546
BstSLI	GKGCMC	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	685, 688
BstX2I	RGATCY	2 cut(s)	139, 783
BstYI	RGATCY	2 cut(s)	139, 783
BstZ17I	GTATAC	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	70, 355, 599
BtsCI	GGATG	2 cut(s)	124, 324
BtsIMutI	CAGTG	3 cut(s)	78, 237, 497
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	166, 503, 934
CaiI	CAGNNNCTG	1 cut(s)	679
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	1 cut(s)	730
Cfr13I	GGNCC	3 cut(s)	43, 242, 473
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	448, 533
CviAII	CATG	2 cut(s)	217, 514
CviQI	GTAC	2 cut(s)	448, 533
DdeI	CTNAG	2 cut(s)	65, 357
DpnI	GATC	2 cut(s)	141, 785
DpnII	GATC	2 cut(s)	139, 783
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	650, 792
EarI	CTCTTC	2 cut(s)	650, 792
Eco130I	CCWWGG	1 cut(s)	484
Eco147I	AGGCCT	1 cut(s)	355
Eco47I	GGWCC	3 cut(s)	43, 242, 473
Eco47III	AGCGCT	1 cut(s)	729
Eco57I	CTGAAG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRII	CCWGG	3 cut(s)	106, 168, 546
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	220, 517
FaiI	YATR	6 cut(s)	78, 218, 339, 419, 515, 627
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	2 cut(s)	216, 513
FauI	CCCGC	1 cut(s)	494
FblI	GTMKAC	2 cut(s)	408, 626
Fnu4HI	GCNGC	4 cut(s)	333, 674, 677, 905
FokI	GGATG	2 cut(s)	131, 311
Fsp4HI	GCNGC	4 cut(s)	333, 674, 677, 905
FspBI	CTAG	1 cut(s)	942
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	4 cut(s)	333, 674, 677, 905
GsaI	CCCAGC	2 cut(s)	501, 762
HaeII	RGCGCY	1 cut(s)	731
HaeIII	GGCC	3 cut(s)	70, 355, 599
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	730
Hin1I	GRCGYC	2 cut(s)	103, 405
Hin1II	CATG	2 cut(s)	220, 517
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	4 cut(s)	50, 441, 585, 877
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	3 cut(s)	235, 409, 627
Hpy188I	TCNGA	4 cut(s)	57, 66, 373, 748
Hpy188III	TCNNGA	6 cut(s)	217, 227, 245, 607, 787, 874
Hpy8I	GTNNAC	3 cut(s)	235, 409, 627
HpyAV	CCTTC	4 cut(s)	376, 460, 910, 922
HpyCH4III	ACNGT	5 cut(s)	33, 224, 252, 492, 713
HpyCH4IV	ACGT	2 cut(s)	405, 553
HpyCH4V	TGCA	7 cut(s)	4, 19, 191, 350, 526, 673, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 329, 670, 901
HpyF3I	CTNAG	2 cut(s)	65, 357
HpySE526I	ACGT	2 cut(s)	405, 553
Hsp92I	GRCGYC	2 cut(s)	103, 405
Hsp92II	CATG	2 cut(s)	220, 517
HspAI	GCGC	1 cut(s)	728
KflI	GGGWCCC	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	139, 783
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	2 cut(s)	685, 688
MaeI	CTAG	1 cut(s)	942
MaeII	ACGT	2 cut(s)	405, 553
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	2 cut(s)	141, 785
MboI	GATC	2 cut(s)	139, 783
MboII	GAAGA	5 cut(s)	286, 667, 793, 809, 901
MflI	RGATCY	2 cut(s)	139, 783
MhlI	GDGCHC	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	4 cut(s)	132, 151, 266, 666
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	450
MnlI	CCTC	9 cut(s)	19, 60, 224, 463, 651, 697, 760, 787, 881
Mox20I	TGGCCA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	3 cut(s)	135, 807, 864
Msp20I	TGGCCA	1 cut(s)	599
MspA1I	CMGCKG	3 cut(s)	501, 679, 707
MspR9I	CCNGG	3 cut(s)	108, 170, 548
MvaI	CCWGG	3 cut(s)	108, 170, 548
MwoI	GCNNNNNNNGC	4 cut(s)	197, 329, 670, 901
NdeII	GATC	2 cut(s)	139, 783
NlaIII	CATG	2 cut(s)	220, 517
NlaIV	GGNNCC	3 cut(s)	141, 474, 475
NmeAIII	GCCGAG	1 cut(s)	910
NmuCI	GTSAC	1 cut(s)	509
PagI	TCATGA	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	50, 585, 877
PflMI	CCANNNNNTGG	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	4 cut(s)	334, 675, 678, 906
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	473
PshAI	GACNNNNGTC	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	3 cut(s)	106, 168, 546
PspFI	CCCAGC	2 cut(s)	497, 758
PspGI	CCWGG	3 cut(s)	106, 168, 546
PspN4I	GGNNCC	3 cut(s)	141, 474, 475
PspPI	GGNCC	3 cut(s)	43, 242, 473
PspPPI	RGGWCCY	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	2 cut(s)	139, 783
PvuII	CAGCTG	2 cut(s)	679, 707
RsaI	GTAC	2 cut(s)	449, 534
RsaNI	GTAC	2 cut(s)	448, 533
SaqAI	TTAA	3 cut(s)	135, 807, 864
SatI	GCNGC	4 cut(s)	333, 674, 677, 905
Sau3AI	GATC	2 cut(s)	139, 783
Sau96I	GGNCC	3 cut(s)	43, 242, 473
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	3 cut(s)	108, 170, 548
SduI	GDGCHC	1 cut(s)	497
SinI	GGWCC	3 cut(s)	43, 242, 473
SmlI	CTYRAG	2 cut(s)	638, 872
SmoI	CTYRAG	2 cut(s)	638, 872
Sse9I	AATT	4 cut(s)	132, 151, 266, 666
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	4 cut(s)	124, 333, 501, 905
SspMI	CTAG	1 cut(s)	942
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	3 cut(s)	106, 168, 546
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	5 cut(s)	33, 224, 252, 492, 713
TaiI	ACGT	2 cut(s)	408, 556
TaqI	TCGA	1 cut(s)	435
TasI	AATT	4 cut(s)	132, 151, 266, 666
TauI	GCSGC	2 cut(s)	335, 907
TfiI	GAWTC	3 cut(s)	50, 585, 877
Tru1I	TTAA	3 cut(s)	135, 807, 864
Tru9I	TTAA	3 cut(s)	135, 807, 864
TscAI	CASTG	3 cut(s)	78, 244, 497
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	673, 676
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	27, 233
TspGWI	ACGGA	2 cut(s)	317, 843
TspRI	CASTG	3 cut(s)	78, 244, 497
Van91I	CCANNNNNTGG	1 cut(s)	77
VpaK11BI	GGWCC	3 cut(s)	43, 242, 473
XapI	RAATTY	2 cut(s)	266, 666
XmiI	GTMKAC	2 cut(s)	408, 626
XspI	CTAG	1 cut(s)	942
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.