Rh4AG393600

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014294
Physical Location & Seq
Reverse (-)
69945534 .. 69948754
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG393600.1

Sequence Viewer

Length: 948 bp
ATGCAAGTAAAAGGTGTGCAGGTTGAGGAGTTGTATTCATTGGACATTGATTCTCTGAACAGTCTGAGACCAGTGTATGGTTTGATTTTCCTGTTCAAATGGCGTCCTGGGGAGAAGGATGACCGCCTTGTGATTAAAGATCCAAATCCTAACTTGTTTTTTGCGAGCCAGGTTATTAACAATGCCTGTGCAACCCAAGCAATCTTGTCTATCCTCCTCAACTGTCCAGATGTTGACATTGGTCCTGAACTGTCGAAACTGAAAGAATTTACAAAGAACTTTCCACCTGAACTGAAAGGATTGGCCATAAACAATAGTGAAGCCATTCGTGCAGCCCACAATAGTTTTGCAAGGCCTGAGCCTTTTGTTCCTGAGGAGCAAAAGGCTGCTGGAAAAGATGATGATGTCTATCATTTTATAAGCTACTTGCCTGTTGATGGGGTCCTGTATGAGCTTGACGGACTGAAGGAGGGACCCATTAGCCTTGGACAGTGCCCTGGTGGGCAAGGTGACATGGAATGGCTGCAGATGGTGCAGCCTGTAATCCAGGAACGCATTGAAAGGTACTCCAAAAGTGAGATAAGATTCAATCTCCTGGCCATTATTAAGAACAGGAAAGAGATGTATACTGTTGAACTTAAGGAGCTCCAAAAGAAGAGGGAGCGCATTTTGCAGCAGCTGTCTATCTTACAGTCGGAGAGACCGGATGATGGCAGCAAATTTCAAGCGCTGAACAAAGCCCTTTCAGAAGTGAATGCTGGGATTGAGGGTGCTACCGAGAAAATCTTGGTGGAGGAAGAAAAGTTTAAGAAGTGGAGAACAGAAAACATCCGCAGGAAACACAACTACATACCCTTTTTGTTCAACTTCCTCAAGATTCTGGCCGAGAAGAAGCAGCTGAAGCCTCTGATTGAGAAGGCGAAGCAGAAGGCAGGCAACCCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004843 GO:0004857 GO:0004866 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009892 GO:0009894 GO:0009987 GO:0010016 GO:0010466 GO:0010605 GO:0010951 GO:0016579 GO:0016787 GO:0019222 GO:0019538 GO:0019783 GO:0030162 GO:0030234 GO:0030414 GO:0031011 GO:0031323 GO:0031324 GO:0031329 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033202 GO:0036211 GO:0036459 GO:0042176 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045861 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0061136 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070603 GO:0070628 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0097346 GO:0098772 GO:0101005 GO:0140096 GO:1901564 GO:1902494 GO:1903050 GO:1903362 GO:1904949
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C12

Protein Analysis

315

Amino Acids

36.08

Weight (kDa)

8.23

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C12 PF01088 2 - 187 6.2e-55 Ubiquitin carboxyl-terminal hydrolase, family 1
UCH_C PF18031 256 - 300 2.6e-19 Ubiquitin carboxyl-terminal hydrolases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65650 AT5G16310
fragaria_vesca FvH4_4g33330 FvH4_4g33330
malus_domestica MD13G1018500.v1.1 MD16G1016200.v1.1
prunus_persica Prupe.1G335400_v2.0.a1 Prupe.1G335400_v2.0.a1
pyrus_communis pycom13g01570 pycom16g01510
rosa_chinensis RchiOBHm_Chr4g0442561
rosa_laevigata RLG00000006002
rosa_multiflora Rmu_ssc0000204.1_g000045
rosa_roxburghii Rroxscaffold_5G00383370
rosa_rugosa Rorug04G0341200
rosa_samantha Rh4AG393600
rosa_wichuraiana Rw4G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 77
AccI GTMKAC 1 cut(s) 626
AciI CCGC 2 cut(s) 124, 832
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 3 cut(s) 303, 597, 882
AcsI RAATTY 2 cut(s) 266, 719
AcuI CTGAAG 2 cut(s) 485, 920
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 1 cut(s) 566
AfeI AGCGCT 1 cut(s) 729
AfiI CCNNNNNNNGG 3 cut(s) 77, 437, 710
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 6 cut(s) 97, 560, 589, 635, 725, 865
AjnI CCWGG 5 cut(s) 106, 168, 496, 546, 594
AluBI AGCT 5 cut(s) 423, 454, 646, 679, 898
AluI AGCT 5 cut(s) 423, 454, 646, 679, 898
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 2 cut(s) 61, 694
AlwI GGATC 1 cut(s) 134
AlwNI CAGNNNCTG 1 cut(s) 679
Aor51HI AGCGCT 1 cut(s) 729
AoxI GGCC 4 cut(s) 303, 353, 597, 882
ApeKI GCWGC 8 cut(s) 332, 386, 523, 535, 673, 676, 714, 895
ApoI RAATTY 2 cut(s) 266, 719
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 2 cut(s) 666, 730
AspS9I GGNCC 3 cut(s) 242, 442, 473
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 3 cut(s) 242, 442, 473
AxyI CCTNAGG 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 497
BalI TGGCCA 2 cut(s) 305, 599
BanII GRGCYC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 8 cut(s) 344, 373, 510, 547, 685, 688, 726, 907
BccI CCATC 3 cut(s) 431, 523, 704
BciT130I CCWGG 5 cut(s) 108, 170, 498, 548, 596
BcoDI GTCTC 2 cut(s) 61, 694
BfaI CTAG 1 cut(s) 942
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 1 cut(s) 731
BfrI CTTAAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 8 cut(s) 333, 387, 524, 536, 674, 677, 715, 896
BlsI GCNGC 8 cut(s) 334, 388, 525, 537, 675, 678, 716, 897
Bme1390I CCNGG 5 cut(s) 108, 170, 498, 548, 596
Bme18I GGWCC 3 cut(s) 242, 442, 473
BmgT120I GGNCC 3 cut(s) 242, 442, 473
BmiI GGNNCC 3 cut(s) 443, 474, 475
BmrFI CCNGG 5 cut(s) 108, 170, 498, 548, 596
BoxI GACNNNNGTC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 857
BsaBI GATNNNNATC 2 cut(s) 144, 408
BsaHI GRCGYC 1 cut(s) 103
BsaI GGTCTC 2 cut(s) 61, 694
BsaJI CCNNGG 3 cut(s) 107, 484, 496
BsaWI WCCGGW 1 cut(s) 703
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 437, 710
Bse1I ACTGG 1 cut(s) 71
Bse21I CCTNAGG 1 cut(s) 372
Bse8I GATNNNNATC 2 cut(s) 144, 408
BseBI CCWGG 5 cut(s) 108, 170, 498, 548, 596
BseDI CCNNGG 3 cut(s) 107, 484, 496
BseGI GGATG 3 cut(s) 124, 712, 828
BseJI GATNNNNATC 2 cut(s) 144, 408
BseLI CCNNNNNNNGG 3 cut(s) 77, 437, 710
BseMII CTCAG 3 cut(s) 56, 348, 363
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 3 cut(s) 41, 206, 389
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 8 cut(s) 344, 373, 510, 547, 685, 688, 726, 907
BseYI CCCAGC 1 cut(s) 758
BsgI GTGCAG 3 cut(s) 38, 351, 554
BshFI GGCC 4 cut(s) 305, 355, 599, 884
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 1 cut(s) 704
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 3 cut(s) 77, 437, 710
BsmAI GTCTC 2 cut(s) 61, 694
BsmFI GGGAC 1 cut(s) 486
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 4 cut(s) 305, 355, 599, 884
Bso31I GGTCTC 2 cut(s) 61, 694
Bsp1286I GDGCHC 2 cut(s) 497, 648
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 2 cut(s) 124, 832
BspANI GGCC 4 cut(s) 305, 355, 599, 884
BspCNI CTCAG 3 cut(s) 57, 349, 364
BspLI GGNNCC 3 cut(s) 443, 474, 475
BspMAI CTGCAG 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 10
BspPI GGATC 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 638
BspTNI GGTCTC 2 cut(s) 61, 694
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 107, 484, 496
BssMI GATC 1 cut(s) 139
BssNAI GTATAC 1 cut(s) 627
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 484
Bst1107I GTATAC 1 cut(s) 627
Bst2UI CCWGG 5 cut(s) 108, 170, 498, 548, 596
Bst4CI ACNGT 6 cut(s) 62, 224, 252, 492, 631, 693
Bst6I CTCTTC 1 cut(s) 650
BstACI GRCGYC 1 cut(s) 103
BstAFI CTTAAG 1 cut(s) 638
BstAPI GCANNNNNTGC 1 cut(s) 532
BstC8I GCNNGC 2 cut(s) 166, 934
BstDEI CTNAG 3 cut(s) 65, 357, 372
BstF5I GGATG 3 cut(s) 124, 712, 828
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 2 cut(s) 666, 730
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 2 cut(s) 61, 694
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
BstNI CCWGG 5 cut(s) 108, 170, 498, 548, 596
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 5 cut(s) 106, 168, 496, 546, 594
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 1 cut(s) 497
BstV1I GCAGC 8 cut(s) 344, 373, 510, 547, 685, 688, 726, 907
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BstZ17I GTATAC 1 cut(s) 627
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 4 cut(s) 305, 355, 599, 884
BtsCI GGATG 3 cut(s) 124, 712, 828
BtsIMutI CAGTG 2 cut(s) 78, 497
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 166, 934
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 2 cut(s) 666, 730
Cfr13I GGNCC 3 cut(s) 242, 442, 473
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 565
CviAII CATG 1 cut(s) 514
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 3 cut(s) 65, 357, 372
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 3 cut(s) 303, 597, 882
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
Ecl136II GAGCTC 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 484
Eco147I AGGCCT 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 648
Eco31I GGTCTC 2 cut(s) 61, 694
Eco47I GGWCC 3 cut(s) 242, 442, 473
Eco47III AGCGCT 1 cut(s) 729
Eco53kI GAGCTC 1 cut(s) 646
Eco57I CTGAAG 2 cut(s) 485, 920
Eco81I CCTNAGG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 646
EcoO109I RGGNCCY 2 cut(s) 442, 473
EcoRII CCWGG 5 cut(s) 106, 168, 496, 546, 594
EcoT14I CCWWGG 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 1 cut(s) 517
FaiI YATR 7 cut(s) 78, 308, 419, 450, 515, 627, 851
FaqI GGGAC 1 cut(s) 486
FatI CATG 1 cut(s) 513
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 8 cut(s) 333, 387, 524, 536, 674, 677, 715, 896
FokI GGATG 3 cut(s) 131, 719, 815
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 8 cut(s) 333, 387, 524, 536, 674, 677, 715, 896
FspBI CTAG 1 cut(s) 942
GlaI GCGC 2 cut(s) 665, 729
GluI GCNGC 8 cut(s) 333, 387, 524, 536, 674, 677, 715, 896
GsaI CCCAGC 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 4 cut(s) 305, 355, 599, 884
HapII CCGG 1 cut(s) 704
HgaI GACGC 1 cut(s) 92
HhaI GCGC 2 cut(s) 666, 730
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 1 cut(s) 517
Hin6I GCGC 2 cut(s) 664, 728
HinP1I GCGC 2 cut(s) 664, 728
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 50, 585, 877
HpaII CCGG 1 cut(s) 704
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 2 cut(s) 235, 627
Hpy188I TCNGA 5 cut(s) 57, 66, 697, 748, 909
Hpy188III TCNNGA 4 cut(s) 227, 245, 371, 874
Hpy8I GTNNAC 2 cut(s) 235, 627
HpyAV CCTTC 4 cut(s) 109, 460, 910, 922
HpyCH4III ACNGT 6 cut(s) 62, 224, 252, 492, 631, 693
HpyCH4V TGCA 8 cut(s) 4, 19, 191, 332, 350, 526, 535, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
HpyF3I CTNAG 3 cut(s) 65, 357, 372
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 1 cut(s) 517
HspAI GCGC 2 cut(s) 664, 728
KflI GGGWCCC 1 cut(s) 473
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 4 cut(s) 376, 643, 651, 661
Lsp1109I GCAGC 8 cut(s) 344, 373, 510, 547, 685, 688, 726, 907
MaeI CTAG 1 cut(s) 942
MaeIII GTNAC 1 cut(s) 509
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 3 cut(s) 667, 809, 901
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 497, 648
MlsI TGGCCA 2 cut(s) 305, 599
MluCI AATT 2 cut(s) 266, 719
MluNI TGGCCA 2 cut(s) 305, 599
MmeI TCCRAC 1 cut(s) 675
Mox20I TGGCCA 2 cut(s) 305, 599
MroXI GAANNNNTTC 1 cut(s) 324
MscI TGGCCA 2 cut(s) 305, 599
MseI TTAA 5 cut(s) 135, 177, 606, 639, 807
Msp20I TGGCCA 2 cut(s) 305, 599
MspA1I CMGCKG 2 cut(s) 679, 898
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 5 cut(s) 108, 170, 498, 548, 596
Mva1269I GAATGC 1 cut(s) 760
MvaI CCWGG 5 cut(s) 108, 170, 498, 548, 596
MwoI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 517
NlaIV GGNNCC 3 cut(s) 443, 474, 475
NmeAIII GCCGAG 1 cut(s) 910
NmuCI GTSAC 1 cut(s) 509
PceI AGGCCT 1 cut(s) 355
PctI GAATGC 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 3 cut(s) 50, 585, 877
PflMI CCANNNNNTGG 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 8 cut(s) 334, 388, 525, 537, 675, 678, 716, 897
PpuMI RGGWCCY 2 cut(s) 442, 473
PshAI GACNNNNGTC 1 cut(s) 240
PsiI TTATAA 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 648
Psp5II RGGWCCY 2 cut(s) 442, 473
Psp6I CCWGG 5 cut(s) 106, 168, 496, 546, 594
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 5 cut(s) 106, 168, 496, 546, 594
PspN4I GGNNCC 3 cut(s) 443, 474, 475
PspPI GGNCC 3 cut(s) 242, 442, 473
PspPPI RGGWCCY 2 cut(s) 442, 473
PstI CTGCAG 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 679, 898
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SacI GAGCTC 1 cut(s) 648
SaqAI TTAA 5 cut(s) 135, 177, 606, 639, 807
SatI GCNGC 8 cut(s) 333, 387, 524, 536, 674, 677, 715, 896
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 3 cut(s) 242, 442, 473
ScrFI CCNGG 5 cut(s) 108, 170, 498, 548, 596
SduI GDGCHC 2 cut(s) 497, 648
SfcI CTRYAG 1 cut(s) 524
SinI GGWCC 3 cut(s) 242, 442, 473
SmlI CTYRAG 2 cut(s) 638, 872
SmoI CTYRAG 2 cut(s) 638, 872
Sse9I AATT 2 cut(s) 266, 719
SseBI AGGCCT 1 cut(s) 355
SsiI CCGC 2 cut(s) 124, 832
SspMI CTAG 1 cut(s) 942
SstI GAGCTC 1 cut(s) 648
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 5 cut(s) 106, 168, 496, 546, 594
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 6 cut(s) 62, 224, 252, 492, 631, 693
TaqI TCGA 1 cut(s) 254
TasI AATT 2 cut(s) 266, 719
TfiI GAWTC 3 cut(s) 50, 585, 877
Tru1I TTAA 5 cut(s) 135, 177, 606, 639, 807
Tru9I TTAA 5 cut(s) 135, 177, 606, 639, 807
TscAI CASTG 2 cut(s) 78, 497
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 8 cut(s) 332, 386, 523, 535, 673, 676, 714, 895
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 2 cut(s) 78, 497
Van91I CCANNNNNTGG 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 638
VpaK11BI GGWCC 3 cut(s) 242, 442, 473
XapI RAATTY 2 cut(s) 266, 719
XmiI GTMKAC 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.