Rmu_ssc0000204.1_g000045

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000204.1
Physical Location & Seq
Forward (+)
203636 .. 205658
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000204.1_g000045.1.cds

Sequence Viewer

Length: 1005 bp
atgtcttggtgcacgattgagtccgacccaggggtctttaccgagcttattcagcagatgcaagtaaaaggtgtgcaggttgaggagttgtattcattggacattgattctctgaacagtctgagaccagtgtatggtttgattttcctgttcaaatggcgtcctggggagaaggatgaccgccttgtgattaaagatccaaatcctaacttgttttttgctagccaggttattaacaatgcctgtgcaacccaagcaatcttgtctatcctcctcaactgtccggatgttgacattggtcctgaactgtcgaaactgaaagaatttacaaagaactttccacctgaactgaaaggattggccataaacaatagtgaagccattcgtgcagcccacaatagttttgcaaggcctgagccttttgttcctgaggagcaaaaggctgctggaaaagatgatgacgtctatcattttataagctacttgcctgttgatggggtcctgtatgagcttgacggactgaaggagggacccattagccttggacagtgccctggtgggcaaggtgacatggaatggctgcagatggtgcagcctgtaatccaggaacgcattgaaaggtactccaaaagtgagataagattcaatctcctggccattattaagaacaggaaagagatgtatactgttgaacttaaggagctccaaaagaagagggagcgcattttgcagcagctgtctatcttacagtcggagagaccggatgatggcagcaaatttcaagcgctgaacaaagccctttcagaagtgaatgctgggattgagggtgctaccgagaaaatcttggtggaggaagaaaagtttaagaagtggagaacagaaaacatccgcaggaaacacaactacattccctttttgttcaacttcctcaagattctggccgagaagaagcagctgaagcctctgattgagaaggcgaagcagaaggcaggcaaccctagatga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

334

Amino Acids

38.25

Weight (kDa)

6.41

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65650 AT5G16310
fragaria_vesca FvH4_4g33330 FvH4_4g33330
malus_domestica MD13G1018500.v1.1 MD16G1016200.v1.1
prunus_persica Prupe.1G335400_v2.0.a1 Prupe.1G335400_v2.0.a1
pyrus_communis pycom13g01570 pycom16g01510
rosa_chinensis RchiOBHm_Chr4g0442561
rosa_laevigata RLG00000006002
rosa_multiflora Rmu_ssc0000204.1_g000045
rosa_roxburghii Rroxscaffold_5G00383370
rosa_rugosa Rorug04G0341200
rosa_samantha Rh4AG393600
rosa_wichuraiana Rw4G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AasI GACNNNNNNGTC 1 cut(s) 32
AatII GACGTC 1 cut(s) 465
Acc36I ACCTGC 1 cut(s) 67
AccB7I CCANNNNNTGG 1 cut(s) 134
AccI GTMKAC 1 cut(s) 683
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 2 cut(s) 181, 889
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 3 cut(s) 360, 654, 939
AcsI RAATTY 2 cut(s) 323, 776
AcuI CTGAAG 2 cut(s) 542, 977
AcyI GRCGYC 2 cut(s) 160, 462
AfaI GTAC 1 cut(s) 623
AfeI AGCGCT 1 cut(s) 786
AfiI CCNNNNNNNGG 4 cut(s) 30, 134, 494, 767
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 6 cut(s) 154, 617, 646, 692, 782, 922
AjnI CCWGG 6 cut(s) 28, 163, 225, 553, 603, 651
AluBI AGCT 6 cut(s) 46, 480, 511, 703, 736, 955
AluI AGCT 6 cut(s) 46, 480, 511, 703, 736, 955
Alw21I GWGCWC 2 cut(s) 14, 705
Alw26I GTCTC 2 cut(s) 118, 751
Alw44I GTGCAC 1 cut(s) 10
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 736
Aor13HI TCCGGA 1 cut(s) 283
Aor51HI AGCGCT 1 cut(s) 786
AoxI GGCC 4 cut(s) 360, 410, 654, 939
ApaLI GTGCAC 1 cut(s) 10
ApeKI GCWGC 8 cut(s) 389, 443, 580, 592, 730, 733, 771, 952
ApoI RAATTY 2 cut(s) 323, 776
Asp700I GAANNNNTTC 1 cut(s) 381
AspLEI GCGC 2 cut(s) 723, 787
AspS9I GGNCC 3 cut(s) 299, 499, 530
AsuHPI GGTGA 1 cut(s) 578
AsuNHI GCTAGC 1 cut(s) 221
AvaII GGWCC 3 cut(s) 299, 499, 530
AxyI CCTNAGG 1 cut(s) 429
BaeGI GKGCMC 2 cut(s) 14, 554
BalI TGGCCA 2 cut(s) 362, 656
BanII GRGCYC 1 cut(s) 705
Bbv12I GWGCWC 2 cut(s) 14, 705
BbvI GCAGC 8 cut(s) 401, 430, 567, 604, 742, 745, 783, 964
BccI CCATC 3 cut(s) 488, 580, 761
BciT130I CCWGG 6 cut(s) 30, 165, 227, 555, 605, 653
BcoDI GTCTC 2 cut(s) 118, 751
BfaI CTAG 2 cut(s) 222, 999
BfmI CTRYAG 1 cut(s) 581
BfoI RGCGCY 1 cut(s) 788
BfrI CTTAAG 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 8 cut(s) 390, 444, 581, 593, 731, 734, 772, 953
BlsI GCNGC 8 cut(s) 391, 445, 582, 594, 732, 735, 773, 954
Bme1390I CCNGG 6 cut(s) 30, 165, 227, 555, 605, 653
Bme18I GGWCC 3 cut(s) 299, 499, 530
BmgT120I GGNCC 3 cut(s) 299, 499, 530
BmiI GGNNCC 3 cut(s) 500, 531, 532
BmrFI CCNGG 6 cut(s) 30, 165, 227, 555, 605, 653
BmsI GCATC 1 cut(s) 48
BmtI GCTAGC 1 cut(s) 225
BoxI GACNNNNGTC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 914
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 160, 462
BsaI GGTCTC 2 cut(s) 118, 751
BsaJI CCNNGG 5 cut(s) 28, 29, 164, 541, 553
BsaWI WCCGGW 2 cut(s) 283, 760
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 134, 494, 767
Bse1I ACTGG 1 cut(s) 128
Bse21I CCTNAGG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 6 cut(s) 30, 165, 227, 555, 605, 653
BseDI CCNNGG 5 cut(s) 28, 29, 164, 541, 553
BseGI GGATG 4 cut(s) 181, 292, 769, 885
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 4 cut(s) 30, 134, 494, 767
BseMII CTCAG 3 cut(s) 113, 405, 420
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 3 cut(s) 98, 263, 446
BseSI GKGCMC 2 cut(s) 14, 554
BseXI GCAGC 8 cut(s) 401, 430, 567, 604, 742, 745, 783, 964
BseYI CCCAGC 1 cut(s) 815
BsgI GTGCAG 3 cut(s) 95, 408, 611
BshFI GGCC 4 cut(s) 362, 412, 656, 941
BsiHKAI GWGCWC 2 cut(s) 14, 705
BsiSI CCGG 2 cut(s) 284, 761
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 4 cut(s) 30, 134, 494, 767
BsmAI GTCTC 2 cut(s) 118, 751
BsmFI GGGAC 1 cut(s) 543
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 4 cut(s) 362, 412, 656, 941
Bso31I GGTCTC 2 cut(s) 118, 751
Bsp1286I GDGCHC 3 cut(s) 14, 554, 705
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 181, 889
BspANI GGCC 4 cut(s) 362, 412, 656, 941
BspCNI CTCAG 3 cut(s) 114, 406, 421
BspEI TCCGGA 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 500, 531, 532
BspMAI CTGCAG 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 67
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 1 cut(s) 191
BspTI CTTAAG 1 cut(s) 695
BspTNI GGTCTC 2 cut(s) 118, 751
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 5 cut(s) 28, 29, 164, 541, 553
BssMI GATC 1 cut(s) 196
BssNAI GTATAC 1 cut(s) 684
BssNI GRCGYC 2 cut(s) 160, 462
BssT1I CCWWGG 1 cut(s) 541
Bst1107I GTATAC 1 cut(s) 684
Bst2UI CCWGG 6 cut(s) 30, 165, 227, 555, 605, 653
Bst4CI ACNGT 6 cut(s) 119, 281, 309, 549, 688, 750
Bst6I CTCTTC 1 cut(s) 707
BstACI GRCGYC 2 cut(s) 160, 462
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 589
BstC8I GCNNGC 2 cut(s) 223, 991
BstDEI CTNAG 3 cut(s) 122, 414, 429
BstF5I GGATG 4 cut(s) 181, 292, 769, 885
BstH2I RGCGCY 1 cut(s) 788
BstHHI GCGC 2 cut(s) 723, 787
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 2 cut(s) 118, 751
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 6 cut(s) 52, 254, 386, 589, 727, 958
BstNI CCWGG 6 cut(s) 30, 165, 227, 555, 605, 653
BstPAI GACNNNNGTC 1 cut(s) 297
BstSCI CCNGG 6 cut(s) 28, 163, 225, 553, 603, 651
BstSFI CTRYAG 1 cut(s) 581
BstSLI GKGCMC 2 cut(s) 14, 554
BstV1I GCAGC 8 cut(s) 401, 430, 567, 604, 742, 745, 783, 964
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZ17I GTATAC 1 cut(s) 684
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 4 cut(s) 362, 412, 656, 941
BtsCI GGATG 4 cut(s) 181, 292, 769, 885
BtsIMutI CAGTG 2 cut(s) 135, 554
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 223, 991
CaiI CAGNNNCTG 1 cut(s) 736
CfoI GCGC 2 cut(s) 723, 787
Cfr13I GGNCC 3 cut(s) 299, 499, 530
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 622
CviAII CATG 1 cut(s) 571
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 3 cut(s) 122, 414, 429
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 3 cut(s) 360, 654, 939
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 1 cut(s) 541
Eco147I AGGCCT 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 705
Eco31I GGTCTC 2 cut(s) 118, 751
Eco47I GGWCC 3 cut(s) 299, 499, 530
Eco47III AGCGCT 1 cut(s) 786
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 2 cut(s) 542, 977
Eco81I CCTNAGG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 703
EcoO109I RGGNCCY 2 cut(s) 499, 530
EcoRII CCWGG 6 cut(s) 28, 163, 225, 553, 603, 651
EcoT14I CCWWGG 1 cut(s) 541
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 1 cut(s) 574
FaiI YATR 6 cut(s) 135, 365, 476, 507, 572, 684
FaqI GGGAC 1 cut(s) 543
FatI CATG 1 cut(s) 570
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 8 cut(s) 390, 444, 581, 593, 731, 734, 772, 953
FokI GGATG 4 cut(s) 188, 299, 776, 872
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 8 cut(s) 390, 444, 581, 593, 731, 734, 772, 953
FspBI CTAG 2 cut(s) 222, 999
GlaI GCGC 2 cut(s) 722, 786
GluI GCNGC 8 cut(s) 390, 444, 581, 593, 731, 734, 772, 953
GsaI CCCAGC 1 cut(s) 819
HaeII RGCGCY 1 cut(s) 788
HaeIII GGCC 4 cut(s) 362, 412, 656, 941
HapII CCGG 2 cut(s) 284, 761
HgaI GACGC 1 cut(s) 149
HhaI GCGC 2 cut(s) 723, 787
Hin1I GRCGYC 2 cut(s) 160, 462
Hin1II CATG 1 cut(s) 574
Hin6I GCGC 2 cut(s) 721, 785
HinP1I GCGC 2 cut(s) 721, 785
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 4 cut(s) 20, 107, 642, 934
HpaII CCGG 2 cut(s) 284, 761
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 3 cut(s) 12, 292, 684
Hpy188I TCNGA 6 cut(s) 25, 114, 123, 754, 805, 966
Hpy188III TCNNGA 4 cut(s) 284, 302, 428, 931
Hpy8I GTNNAC 3 cut(s) 12, 292, 684
HpyAV CCTTC 4 cut(s) 166, 517, 967, 979
HpyCH4III ACNGT 6 cut(s) 119, 281, 309, 549, 688, 750
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 9 cut(s) 12, 61, 76, 248, 389, 407, 583, 592, 730
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 254, 386, 589, 727, 958
HpyF3I CTNAG 3 cut(s) 122, 414, 429
HpySE526I ACGT 1 cut(s) 462
Hsp92I GRCGYC 2 cut(s) 160, 462
Hsp92II CATG 1 cut(s) 574
HspAI GCGC 2 cut(s) 721, 785
KflI GGGWCCC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 283
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 4 cut(s) 433, 700, 708, 718
Lsp1109I GCAGC 8 cut(s) 401, 430, 567, 604, 742, 745, 783, 964
LweI GCATC 1 cut(s) 48
MaeI CTAG 2 cut(s) 222, 999
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 566
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 724, 866, 958
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 3 cut(s) 14, 554, 705
MlsI TGGCCA 2 cut(s) 362, 656
MluCI AATT 2 cut(s) 323, 776
MluNI TGGCCA 2 cut(s) 362, 656
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 48, 732
Mox20I TGGCCA 2 cut(s) 362, 656
MroI TCCGGA 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 2 cut(s) 362, 656
MseI TTAA 5 cut(s) 192, 234, 663, 696, 864
Msp20I TGGCCA 2 cut(s) 362, 656
MspA1I CMGCKG 2 cut(s) 736, 955
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 284, 761
MspR9I CCNGG 6 cut(s) 30, 165, 227, 555, 605, 653
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 6 cut(s) 30, 165, 227, 555, 605, 653
MwoI GCNNNNNNNGC 6 cut(s) 52, 254, 386, 589, 727, 958
NdeII GATC 1 cut(s) 196
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 3 cut(s) 500, 531, 532
NmeAIII GCCGAG 1 cut(s) 967
NmuCI GTSAC 1 cut(s) 566
PasI CCCWGGG 1 cut(s) 29
PceI AGGCCT 1 cut(s) 412
PctI GAATGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 107, 642, 934
PflMI CCANNNNNTGG 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 603
PkrI GCNGC 8 cut(s) 391, 445, 582, 594, 732, 735, 773, 954
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PpuMI RGGWCCY 2 cut(s) 499, 530
PshAI GACNNNNGTC 1 cut(s) 297
PsiI TTATAA 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 705
Psp5II RGGWCCY 2 cut(s) 499, 530
Psp6I CCWGG 6 cut(s) 28, 163, 225, 553, 603, 651
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 6 cut(s) 28, 163, 225, 553, 603, 651
PspN4I GGNNCC 3 cut(s) 500, 531, 532
PspPI GGNCC 3 cut(s) 299, 499, 530
PspPPI RGGWCCY 2 cut(s) 499, 530
PstI CTGCAG 1 cut(s) 585
PstNI CAGNNNCTG 1 cut(s) 736
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 2 cut(s) 736, 955
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
SacI GAGCTC 1 cut(s) 705
SaqAI TTAA 5 cut(s) 192, 234, 663, 696, 864
SatI GCNGC 8 cut(s) 390, 444, 581, 593, 731, 734, 772, 953
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 3 cut(s) 299, 499, 530
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 6 cut(s) 30, 165, 227, 555, 605, 653
SduI GDGCHC 3 cut(s) 14, 554, 705
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 581
SinI GGWCC 3 cut(s) 299, 499, 530
SmlI CTYRAG 2 cut(s) 695, 929
SmoI CTYRAG 2 cut(s) 695, 929
Sse9I AATT 2 cut(s) 323, 776
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 2 cut(s) 181, 889
SspMI CTAG 2 cut(s) 222, 999
SstI GAGCTC 1 cut(s) 705
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 6 cut(s) 28, 163, 225, 553, 603, 651
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 6 cut(s) 119, 281, 309, 549, 688, 750
TaiI ACGT 1 cut(s) 465
TaqI TCGA 1 cut(s) 311
TasI AATT 2 cut(s) 323, 776
TfiI GAWTC 3 cut(s) 107, 642, 934
Tru1I TTAA 5 cut(s) 192, 234, 663, 696, 864
Tru9I TTAA 5 cut(s) 192, 234, 663, 696, 864
TscAI CASTG 2 cut(s) 135, 554
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 8 cut(s) 389, 443, 580, 592, 730, 733, 771, 952
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 2 cut(s) 135, 554
Van91I CCANNNNNTGG 1 cut(s) 134
Vha464I CTTAAG 1 cut(s) 695
VneI GTGCAC 1 cut(s) 10
VpaK11BI GGWCC 3 cut(s) 299, 499, 530
XapI RAATTY 2 cut(s) 323, 776
XmiI GTMKAC 1 cut(s) 683
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 2 cut(s) 222, 999
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.