Prupe.1G335400_v2.0.a1

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
31679422 .. 31682411
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G335400.1

Sequence Viewer

Length: 1005 bp
ATGTCTTGGTGCACGATTGAGTCCGACCCAGGGGTGTTTACAGAACTTATTCAGCAGATGCAAGTAAAAGGCGTGCAGGTTGAGGAGTTGTATTCATTGGACCTTGATTCTCTGAACAATCTGAGGCCGGTGTATGGTTTGATTTTCCTATTCAAATGGCGTCCAGGGGAAAGGGATGATCGCCTTGTAATTAAGGATCCAAATCCTAATTTGTTTTTTGCAAGCCAGGTTATTAATAATGCTTGTGCCACCCAAGCAATCTTGTCTATCCTCATGAACTGTCCAGATGTTGACATTGGTCCTGAACTGTCAAAACTGAAAGAGTTTACAAAGAATTTTCCACCTGAACTGAAAGGGCTGGCAATAAATAACAGCGACGCTATCCGTGCAGCCCATAATAGTTTTGCAAGGCCTGAGCCGTTTATTCCTGAGGAGCAGAAGGTAGCTGAAAAAGATGACGATGTCTACCATTTTATAAGCTACTTGCCTGTTGATGGGGTCCTGTATGAGCTTGATGGATTGAAGGAGGGGCCGATTAGCCTTGGACAGTGCCCTGGTGGGCAAGGTGACATGGAATGGCTGCAGATGGTACAACCTGTAATCCAGGAGCGCATTGAAAGGTATTCCAAAAGTGAGATAAGATTCAATCTCTTGGCCATAATAAAGAACAGGAAAGAGATGTATACTGCTGAACTTAAGGAACTCCAAAAGAAGAGGGAGCGTATTTTGCAGCAGCTGTCTGCCTTACAATCAGAGAGACCGGCCGACAGTAGCAAATTTGAAGCGCTGAACAAAGGTCTTTCAGAAATTAATGCTGGGATCGAGGGCGCTACCGAGAAGATCTTGATGGAAGAAGAAAAATTTAAGAAGTGGAGGACAGAAAATATTCGCCGGAAGCACAACTACATACCCTTTTTGTTTAACTTCCTCAAGATTCTTGCTGAGAAGAAGCAGCTGAAGCCTCTTATTGAGAAGGCAAAGCAAAAATCTGGCAACCCTAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

335

Amino Acids

38.38

Weight (kDa)

6.11

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65650 AT5G16310
fragaria_vesca FvH4_4g33330 FvH4_4g33330
malus_domestica MD13G1018500.v1.1 MD16G1016200.v1.1
prunus_persica Prupe.1G335400_v2.0.a1 Prupe.1G335400_v2.0.a1
pyrus_communis pycom13g01570 pycom16g01510
rosa_chinensis RchiOBHm_Chr4g0442561
rosa_laevigata RLG00000006002
rosa_multiflora Rmu_ssc0000204.1_g000045
rosa_roxburghii Rroxscaffold_5G00383370
rosa_rugosa Rorug04G0341200
rosa_samantha Rh4AG393600
rosa_wichuraiana Rw4G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 67
AccI GTMKAC 2 cut(s) 465, 683
AclWI GGATC 3 cut(s) 191, 204, 827
AcoI YGGCCR 2 cut(s) 654, 762
AcsI RAATTY 3 cut(s) 334, 776, 860
AcuI CTGAAG 1 cut(s) 977
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 1 cut(s) 591
AfeI AGCGCT 1 cut(s) 786
AfiI CCNNNNNNNGG 3 cut(s) 30, 134, 494
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 5 cut(s) 154, 523, 617, 646, 782
AjnI CCWGG 5 cut(s) 28, 163, 225, 553, 603
AluBI AGCT 5 cut(s) 446, 480, 511, 736, 955
AluI AGCT 5 cut(s) 446, 480, 511, 736, 955
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 751
Alw44I GTGCAC 1 cut(s) 10
AlwI GGATC 3 cut(s) 191, 204, 827
AlwNI CAGNNNCTG 1 cut(s) 736
Aor51HI AGCGCT 1 cut(s) 786
AoxI GGCC 5 cut(s) 125, 410, 530, 654, 762
ApaLI GTGCAC 1 cut(s) 10
ApeKI GCWGC 5 cut(s) 389, 580, 730, 733, 952
ApoI RAATTY 3 cut(s) 334, 776, 860
AseI ATTAAT 2 cut(s) 234, 810
Asp700I GAANNNNTTC 2 cut(s) 48, 885
AspLEI GCGC 3 cut(s) 612, 787, 830
AspS9I GGNCC 4 cut(s) 100, 299, 499, 530
AsuHPI GGTGA 1 cut(s) 578
AvaII GGWCC 3 cut(s) 100, 299, 499
AxyI CCTNAGG 1 cut(s) 429
BaeGI GKGCMC 2 cut(s) 14, 554
BalI TGGCCA 1 cut(s) 656
BamHI GGATCC 1 cut(s) 196
BarI GAAGNNNNNNTAC 2 cut(s) 887, 919
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 5 cut(s) 401, 567, 742, 745, 964
BccI CCATC 4 cut(s) 488, 509, 580, 841
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 5 cut(s) 30, 165, 227, 555, 605
BcoDI GTCTC 1 cut(s) 751
BfaI CTAG 1 cut(s) 999
BfmI CTRYAG 1 cut(s) 581
BfoI RGCGCY 2 cut(s) 788, 831
BfrI CTTAAG 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 67
BglII AGATCT 1 cut(s) 840
BisI GCNGC 5 cut(s) 390, 581, 731, 734, 953
BlsI GCNGC 5 cut(s) 391, 582, 732, 735, 954
Bme1390I CCNGG 5 cut(s) 30, 165, 227, 555, 605
Bme18I GGWCC 3 cut(s) 100, 299, 499
BmgT120I GGNCC 4 cut(s) 100, 299, 499, 530
BmiI GGNNCC 3 cut(s) 198, 500, 531
BmrFI CCNGG 5 cut(s) 30, 165, 227, 555, 605
BmsI GCATC 1 cut(s) 48
BoxI GACNNNNGTC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 914
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 751
BsaJI CCNNGG 5 cut(s) 28, 29, 164, 541, 553
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 134, 494
Bse118I RCCGGY 2 cut(s) 127, 760
Bse21I CCTNAGG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 5 cut(s) 30, 165, 227, 555, 605
BseDI CCNNGG 5 cut(s) 28, 29, 164, 541, 553
BseGI GGATG 1 cut(s) 181
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 30, 134, 494
BseMII CTCAG 4 cut(s) 113, 405, 420, 933
BseRI GAGGAG 2 cut(s) 98, 446
BseSI GKGCMC 2 cut(s) 14, 554
BseX3I CGGCCG 1 cut(s) 762
BseXI GCAGC 5 cut(s) 401, 567, 742, 745, 964
BseYI CCCAGC 1 cut(s) 815
BsgI GTGCAG 2 cut(s) 95, 408
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 5 cut(s) 127, 412, 532, 656, 764
BsiEI CGRYCG 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 3 cut(s) 128, 761, 892
BslI CCNNNNNNNGG 3 cut(s) 30, 134, 494
BsmAI GTCTC 1 cut(s) 751
BsnI GGCC 5 cut(s) 127, 412, 532, 656, 764
Bso31I GGTCTC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 14, 554
Bsp143I GATC 4 cut(s) 178, 196, 819, 840
BspANI GGCC 5 cut(s) 127, 412, 532, 656, 764
BspCNI CTCAG 4 cut(s) 114, 406, 421, 934
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 198, 500, 531
BspMAI CTGCAG 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 3 cut(s) 191, 204, 827
BspTI CTTAAG 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 751
BsrFI RCCGGY 2 cut(s) 127, 760
BssAI RCCGGY 2 cut(s) 127, 760
BssECI CCNNGG 5 cut(s) 28, 29, 164, 541, 553
BssMI GATC 4 cut(s) 178, 196, 819, 840
BssNAI GTATAC 1 cut(s) 684
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 541
Bst1107I GTATAC 1 cut(s) 684
Bst2UI CCWGG 5 cut(s) 30, 165, 227, 555, 605
Bst4CI ACNGT 4 cut(s) 281, 309, 549, 770
Bst6I CTCTTC 1 cut(s) 707
BstACI GRCGYC 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 695
BstC8I GCNNGC 3 cut(s) 74, 223, 360
BstDEI CTNAG 4 cut(s) 122, 414, 429, 942
BstF5I GGATG 1 cut(s) 181
BstH2I RGCGCY 2 cut(s) 788, 831
BstHHI GCGC 3 cut(s) 612, 787, 830
BstKTI GATC 4 cut(s) 181, 199, 822, 843
BstMAI GTCTC 1 cut(s) 751
BstMBI GATC 4 cut(s) 178, 196, 819, 840
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 4 cut(s) 254, 386, 727, 958
BstNI CCWGG 5 cut(s) 30, 165, 227, 555, 605
BstPAI GACNNNNGTC 1 cut(s) 297
BstSCI CCNGG 5 cut(s) 28, 163, 225, 553, 603
BstSFI CTRYAG 1 cut(s) 581
BstSLI GKGCMC 2 cut(s) 14, 554
BstV1I GCAGC 5 cut(s) 401, 567, 742, 745, 964
BstX2I RGATCY 2 cut(s) 196, 840
BstYI RGATCY 2 cut(s) 196, 840
BstZ17I GTATAC 1 cut(s) 684
BstZI CGGCCG 1 cut(s) 762
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 5 cut(s) 127, 412, 532, 656, 764
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 554
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 3 cut(s) 74, 223, 360
CaiI CAGNNNCTG 1 cut(s) 736
CciI TCATGA 1 cut(s) 273
CfoI GCGC 3 cut(s) 612, 787, 830
Cfr10I RCCGGY 2 cut(s) 127, 760
Cfr13I GGNCC 4 cut(s) 100, 299, 499, 530
CseI GACGC 2 cut(s) 149, 386
Csp6I GTAC 1 cut(s) 590
CviAII CATG 2 cut(s) 274, 571
CviQI GTAC 1 cut(s) 590
DdeI CTNAG 4 cut(s) 122, 414, 429, 942
DpnI GATC 4 cut(s) 180, 198, 821, 842
DpnII GATC 4 cut(s) 178, 196, 819, 840
EaeI YGGCCR 2 cut(s) 654, 762
EagI CGGCCG 1 cut(s) 762
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
EclXI CGGCCG 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 541
Eco147I AGGCCT 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 751
Eco47I GGWCC 3 cut(s) 100, 299, 499
Eco47III AGCGCT 1 cut(s) 786
Eco52I CGGCCG 1 cut(s) 762
Eco57I CTGAAG 1 cut(s) 977
Eco81I CCTNAGG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 499
EcoRII CCWGG 5 cut(s) 28, 163, 225, 553, 603
EcoT14I CCWWGG 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 2 cut(s) 277, 574
FaiI YATR 9 cut(s) 135, 275, 396, 476, 507, 572, 659, 684, 908
FatI CATG 2 cut(s) 273, 570
FblI GTMKAC 2 cut(s) 465, 683
Fnu4HI GCNGC 5 cut(s) 390, 581, 731, 734, 953
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 5 cut(s) 390, 581, 731, 734, 953
FspBI CTAG 1 cut(s) 999
GlaI GCGC 3 cut(s) 611, 786, 829
GluI GCNGC 5 cut(s) 390, 581, 731, 734, 953
GsaI CCCAGC 1 cut(s) 819
HaeII RGCGCY 2 cut(s) 788, 831
HaeIII GGCC 5 cut(s) 127, 412, 532, 656, 764
HapII CCGG 3 cut(s) 128, 761, 892
HgaI GACGC 2 cut(s) 149, 386
HhaI GCGC 3 cut(s) 612, 787, 830
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 2 cut(s) 277, 574
Hin6I GCGC 3 cut(s) 610, 785, 828
HinP1I GCGC 3 cut(s) 610, 785, 828
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 4 cut(s) 20, 107, 642, 934
HpaII CCGG 3 cut(s) 128, 761, 892
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 6 cut(s) 12, 39, 292, 327, 466, 684
Hpy188I TCNGA 5 cut(s) 25, 114, 123, 754, 805
Hpy188III TCNNGA 6 cut(s) 274, 284, 302, 428, 844, 931
Hpy8I GTNNAC 6 cut(s) 12, 39, 292, 327, 466, 684
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 3 cut(s) 433, 517, 967
HpyCH4III ACNGT 4 cut(s) 281, 309, 549, 770
HpyCH4V TGCA 8 cut(s) 12, 61, 76, 221, 389, 407, 583, 730
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 386, 727, 958
HpyF3I CTNAG 4 cut(s) 122, 414, 429, 942
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 2 cut(s) 277, 574
HspAI GCGC 3 cut(s) 610, 785, 828
Kzo9I GATC 4 cut(s) 178, 196, 819, 840
LmnI GCTCC 3 cut(s) 433, 607, 718
Lsp1109I GCAGC 5 cut(s) 401, 567, 742, 745, 964
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 999
MaeIII GTNAC 1 cut(s) 566
MalI GATC 4 cut(s) 180, 198, 821, 842
MboI GATC 4 cut(s) 178, 196, 819, 840
MboII GAAGA 5 cut(s) 724, 850, 863, 866, 958
MflI RGATCY 2 cut(s) 196, 840
MhlI GDGCHC 2 cut(s) 14, 554
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 6 cut(s) 189, 208, 334, 776, 807, 860
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 656
MroXI GAANNNNTTC 2 cut(s) 48, 885
MscI TGGCCA 1 cut(s) 656
MseI TTAA 6 cut(s) 192, 234, 696, 810, 864, 921
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 2 cut(s) 736, 955
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 3 cut(s) 128, 761, 892
MspR9I CCNGG 5 cut(s) 30, 165, 227, 555, 605
MvaI CCWGG 5 cut(s) 30, 165, 227, 555, 605
MwoI GCNNNNNNNGC 4 cut(s) 254, 386, 727, 958
NdeII GATC 4 cut(s) 178, 196, 819, 840
NlaIII CATG 2 cut(s) 277, 574
NlaIV GGNNCC 3 cut(s) 198, 500, 531
NmuCI GTSAC 1 cut(s) 566
PagI TCATGA 1 cut(s) 273
PasI CCCWGGG 1 cut(s) 29
PceI AGGCCT 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 48, 885
PfeI GAWTC 3 cut(s) 107, 642, 934
PflFI GACNNNGTC 1 cut(s) 461
PfoI TCCNGGA 1 cut(s) 603
PkrI GCNGC 5 cut(s) 391, 582, 732, 735, 954
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PpuMI RGGWCCY 1 cut(s) 499
PshAI GACNNNNGTC 1 cut(s) 297
PshBI ATTAAT 2 cut(s) 234, 810
PsiI TTATAA 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 499
Psp6I CCWGG 5 cut(s) 28, 163, 225, 553, 603
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 5 cut(s) 28, 163, 225, 553, 603
PspN4I GGNNCC 3 cut(s) 198, 500, 531
PspPI GGNCC 4 cut(s) 100, 299, 499, 530
PspPPI RGGWCCY 1 cut(s) 499
PstI CTGCAG 1 cut(s) 585
PstNI CAGNNNCTG 1 cut(s) 736
PsuI RGATCY 2 cut(s) 196, 840
PsyI GACNNNGTC 1 cut(s) 461
PvuII CAGCTG 2 cut(s) 736, 955
RsaI GTAC 1 cut(s) 591
RsaNI GTAC 1 cut(s) 590
SaqAI TTAA 6 cut(s) 192, 234, 696, 810, 864, 921
SatI GCNGC 5 cut(s) 390, 581, 731, 734, 953
Sau3AI GATC 4 cut(s) 178, 196, 819, 840
Sau96I GGNCC 4 cut(s) 100, 299, 499, 530
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 5 cut(s) 30, 165, 227, 555, 605
SduI GDGCHC 2 cut(s) 14, 554
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 581
SinI GGWCC 3 cut(s) 100, 299, 499
SmlI CTYRAG 2 cut(s) 695, 929
SmoI CTYRAG 2 cut(s) 695, 929
Sse9I AATT 6 cut(s) 189, 208, 334, 776, 807, 860
SseBI AGGCCT 1 cut(s) 412
SspI AATATT 1 cut(s) 886
SspMI CTAG 1 cut(s) 999
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 5 cut(s) 28, 163, 225, 553, 603
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 4 cut(s) 281, 309, 549, 770
TaqI TCGA 1 cut(s) 822
TasI AATT 6 cut(s) 189, 208, 334, 776, 807, 860
TfiI GAWTC 3 cut(s) 107, 642, 934
Tru1I TTAA 6 cut(s) 192, 234, 696, 810, 864, 921
Tru9I TTAA 6 cut(s) 192, 234, 696, 810, 864, 921
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 5 cut(s) 389, 580, 730, 733, 952
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 2 cut(s) 84, 290
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 554
Tth111I GACNNNGTC 1 cut(s) 461
Vha464I CTTAAG 1 cut(s) 695
VneI GTGCAC 1 cut(s) 10
VpaK11BI GGWCC 3 cut(s) 100, 299, 499
VspI ATTAAT 2 cut(s) 234, 810
XapI RAATTY 3 cut(s) 334, 776, 860
XmiI GTMKAC 2 cut(s) 465, 683
XmnI GAANNNNTTC 2 cut(s) 48, 885
XspI CTAG 1 cut(s) 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.