Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Reverse (-)

5384250 .. 5385230

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGAGATAGAATGGAGAGACTTGTGGTGCTTCCTTTCTCCATCGGATGTATCTCCGTCTCAAGTGTTGCCGTTTTGTCTCCTCTCTCTAAGCCTCATCATCATCACTCTCGTCAAGTGATTCGTGAACAAGAGGAGGAAGATAACATGAAGAATGTATTCAAGTTCCTTGCGGTTTCTAAACCGGAGATTTCTATCGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAACTCTTTGCTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAGGAGTTCCAACGAACGTAAAACATGTATCGCACATCGGTTGGGAAAGCGGTCTAACCGCGGCTACAGGTCCTGGTAAAGGATGGGAAGATCTCATACCGCCGGAGTTGCTTGCAGCCGCTGCTTCAAAAAAAGAAATTAACCCTCATCTTCATCCAACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

153

Amino Acids

17.01

Weight (kDa)

6.24

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	460
AccII	CGCG	1 cut(s)	356
AciI	CCGC	6 cut(s)	173, 345, 354, 356, 395, 414
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	163, 217, 226, 423
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	13, 64, 84
AlwNI	CAGNNNCTG	2 cut(s)	368, 416
ApeKI	GCWGC	2 cut(s)	410, 416
Asp700I	GAANNNNTTC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	365
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BbvI	GCAGC	2 cut(s)	403, 422
BccI	CCATC	2 cut(s)	50, 372
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	3 cut(s)	13, 64, 84
BfmI	CTRYAG	1 cut(s)	360
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	4 cut(s)	357, 411, 414, 417
BlsI	GCNGC	4 cut(s)	358, 412, 415, 418
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	2 cut(s)	184, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	3 cut(s)	53, 383, 448
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	72, 149
BseXI	GCAGC	2 cut(s)	403, 422
Bsh1236I	CGCG	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	185, 208, 398
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	3 cut(s)	13, 64, 84
BsmBI	CGTCTC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	6 cut(s)	173, 345, 354, 356, 395, 414
BspFNI	CGCG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	3 cut(s)	53, 383, 448
BstFNI	CGCG	1 cut(s)	356
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	3 cut(s)	13, 64, 84
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 416
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	403, 422
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	53, 383, 448
Cac8I	GCNNGC	1 cut(s)	408
CaiI	CAGNNNCTG	2 cut(s)	368, 416
Cfr13I	GGNCC	1 cut(s)	365
Cfr42I	CCGCGG	1 cut(s)	357
CviAII	CATG	2 cut(s)	148, 320
CviJI	RGCY	4 cut(s)	94, 222, 359, 413
CviKI_1	RGCY	4 cut(s)	94, 222, 359, 413
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	2 cut(s)	151, 323
FaiI	YATR	4 cut(s)	149, 321, 392, 460
FatI	CATG	2 cut(s)	147, 319
Fnu4HI	GCNGC	4 cut(s)	357, 411, 414, 417
FokI	GGATG	3 cut(s)	60, 390, 435
Fsp4HI	GCNGC	4 cut(s)	357, 411, 414, 417
GluI	GCNGC	4 cut(s)	357, 411, 414, 417
HapII	CCGG	3 cut(s)	185, 208, 398
Hin1II	CATG	2 cut(s)	151, 323
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	3 cut(s)	185, 208, 398
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	4 cut(s)	125, 217, 226, 285
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 416
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	151, 323
KspI	CCGCGG	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	385
LpnPI	CCDG	7 cut(s)	198, 221, 270, 348, 354, 381, 411
Lsp1109I	GCAGC	2 cut(s)	403, 422
MaeII	ACGT	1 cut(s)	312
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	6 cut(s)	152, 163, 272, 281, 395, 437
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	93, 105, 127, 130, 450
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	204, 435
MspA1I	CMGCKG	2 cut(s)	356, 416
MspI	CCGG	3 cut(s)	185, 208, 398
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	403, 416
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	2 cut(s)	151, 323
NspI	RCATGY	1 cut(s)	323
PciI	ACATGT	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	358, 412, 415, 418
PpuMI	RGGWCCY	1 cut(s)	365
PscI	ACATGT	1 cut(s)	319
PsiI	TTATAA	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
PstNI	CAGNNNCTG	2 cut(s)	368, 416
PsuI	RGATCY	1 cut(s)	385
SacII	CCGCGG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	204, 435
SatI	GCNGC	4 cut(s)	357, 411, 414, 417
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	369
SetI	ASST	3 cut(s)	224, 315, 367
SfcI	CTRYAG	1 cut(s)	360
Sfr303I	CCGCGG	1 cut(s)	357
SgrBI	CCGCGG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	6 cut(s)	173, 345, 354, 356, 395, 414
StyD4I	CCNGG	1 cut(s)	367
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	432
TauI	GCSGC	2 cut(s)	359, 416
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	204, 435
Tru9I	TTAA	2 cut(s)	204, 435
TseI	GCWGC	2 cut(s)	410, 416
TspDTI	ATGAA	3 cut(s)	164, 273, 437
TspGWI	ACGGA	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	372
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.