Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Forward (+)

22651196 .. 22652032

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGACAAAGAATGGAAAGATTCGTTCTTCTTCCTTACGCAATTGGTTGCGTTTCTGAATCGAGCGTTGCTGTTGCCGGCGTGCAGCAGCAGCCGCCCAGAAGATCAAAACCGGACACAAAGCCGTCTCCAATAAGAACTAAAGAAGCTGAAGAGGAAGAAGATGAAGAAGATAGCTTATCGGGCGAAGCCATGAAGAACTCGTTTAGATCCCTGGCTCTCCCGAAACCAAACATATCAACCGGTATTCATAGGCTCGTCAAGGGTTTCAAGAACTTCTCTCACCAATTTGTTTACAAGGATGATATGGAAGAAGTGCTGGAAATGGATATGGAAATAGGGTGTCCAACGGATGTGAAACATGTGACACACATAGGTTGGGACGCTTCCACTTCAGCTTCCGCTGCCTCTGCAACAACCGACCCCTTTGGGGGCTGGGATAATCTCGTATCGCCTGATCTGCTCTCTGTTTCCCCTGTTTCTTGGAGGCAATTTGAGCTATCTGTGCCCTCACAATCTGAAGCTGCAGTACCACCTCTTGTTCACGGTTCTTCTTCAAAATTTGTTGAAAAGAGTGGTGGAGGGATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

198

Amino Acids

21.57

Weight (kDa)

5.15

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 402
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	3 cut(s)	171, 378, 540
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	430, 431
AflIII	ACRYGT	1 cut(s)	361
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	271, 558, 569
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	5 cut(s)	149, 177, 398, 499, 524
AluI	AGCT	5 cut(s)	149, 177, 398, 499, 524
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	204
ApeKI	GCWGC	5 cut(s)	85, 88, 91, 404, 524
ApoI	RAATTY	1 cut(s)	560
AsiGI	ACCGGT	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	510
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
BbvI	GCAGC	5 cut(s)	97, 100, 103, 391, 511
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	6 cut(s)	86, 89, 92, 95, 405, 525
BlsI	GCNGC	6 cut(s)	87, 90, 93, 96, 406, 526
Bme1390I	CCNGG	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	2 cut(s)	112, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 431
Bse118I	RCCGGY	2 cut(s)	77, 242
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	3 cut(s)	307, 358, 591
BseLI	CCNNNNNNNGG	2 cut(s)	430, 431
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	5 cut(s)	97, 100, 103, 391, 511
BseYI	CCCAGC	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	78, 113, 243
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	430, 431
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	3 cut(s)	104, 209, 457
BspACI	CCGC	2 cut(s)	95, 402
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	1 cut(s)	204
BsrFI	RCCGGY	2 cut(s)	77, 242
BssAI	RCCGGY	2 cut(s)	77, 242
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	104, 209, 457
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	79, 83
BstF5I	GGATG	3 cut(s)	307, 358, 591
BstKTI	GATC	3 cut(s)	107, 212, 460
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	3 cut(s)	104, 209, 457
BstMWI	GCNNNNNNNGC	8 cut(s)	91, 94, 183, 404, 410, 460, 496, 505
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	5 cut(s)	97, 100, 103, 391, 511
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	307, 358, 591
Cac8I	GCNNGC	2 cut(s)	79, 83
Cfr10I	RCCGGY	2 cut(s)	77, 242
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	530
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	2 cut(s)	193, 362
CviQI	GTAC	1 cut(s)	530
DpnI	GATC	3 cut(s)	106, 211, 459
DpnII	GATC	3 cut(s)	104, 209, 457
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco57I	CTGAAG	3 cut(s)	171, 378, 540
EcoRII	CCWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	196, 365
FaiI	YATR	7 cut(s)	194, 236, 252, 308, 332, 363, 374
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	192, 361
Fnu4HI	GCNGC	6 cut(s)	86, 89, 92, 95, 405, 525
FokI	GGATG	2 cut(s)	314, 365
Fsp4HI	GCNGC	6 cut(s)	86, 89, 92, 95, 405, 525
GluI	GCNGC	6 cut(s)	86, 89, 92, 95, 405, 525
GsaI	CCCAGC	1 cut(s)	439
HapII	CCGG	3 cut(s)	78, 113, 243
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	196, 365
HinfI	GANTC	2 cut(s)	21, 59
HpaII	CCGG	3 cut(s)	78, 113, 243
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	295, 544
Hpy188I	TCNGA	2 cut(s)	58, 520
Hpy188III	TCNNGA	2 cut(s)	223, 271
Hpy8I	GTNNAC	2 cut(s)	295, 544
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	3 cut(s)	85, 413, 527
HpyF10VI	GCNNNNNNNGC	8 cut(s)	91, 94, 183, 404, 410, 460, 496, 505
Hsp92II	CATG	2 cut(s)	196, 365
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	104, 209, 457
Lsp1109I	GCAGC	5 cut(s)	97, 100, 103, 391, 511
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	106, 211, 459
MboI	GATC	3 cut(s)	104, 209, 457
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	4 cut(s)	42, 287, 491, 560
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	6 cut(s)	148, 418, 480, 520, 546, 575
MroNI	GCCGGC	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	3 cut(s)	78, 113, 243
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	8 cut(s)	91, 94, 183, 404, 410, 460, 496, 505
NaeI	GCCGGC	1 cut(s)	79
NdeII	GATC	3 cut(s)	104, 209, 457
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	2 cut(s)	196, 365
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	21, 59
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	6 cut(s)	87, 90, 93, 96, 406, 526
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SatI	GCNGC	6 cut(s)	86, 89, 92, 95, 405, 525
Sau3AI	GATC	3 cut(s)	104, 209, 457
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	7 cut(s)	151, 179, 379, 400, 501, 526, 538
SfcI	CTRYAG	1 cut(s)	525
Sse9I	AATT	4 cut(s)	42, 287, 491, 560
SsiI	CCGC	2 cut(s)	95, 402
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	42, 287, 491, 560
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	21, 59
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	5 cut(s)	85, 88, 91, 404, 524
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	180, 209, 239
TspGWI	ACGGA	1 cut(s)	365
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.