Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Reverse (-)

432380 .. 435230

Gene Structure 2851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGAGAAAGAATGGAAAGACTTGTGCTTCTTCCTTTTACCATTGGTTGTGTTTCTGAATCAAGCATTGCTGTTGGTGCACAACAACAGCCCAGAAGATCAAAATCAGATACAAATCCATCTCCAATAAGAACCAAAGAAGAAGAAGAGGAAGAGGAGGAAGGAGATGGCTTATCAAGTGGTGAGAACATGAAGAACTCATTTAGATCCCTCGCTCTTTCAAAACCAAACATATCTGTTGGTATACATAGGCTCTCCAAGGGTTTCAAGACTTTTTCGCAATTGTTTGTGTACAAGGATGAAATGGAAGAAGAAGAACTGGAAATGGATATGGAAATAGGGTGTCCTACAGATGTGAAGCATGTGACACACATAGGTTTGGATGGTTCTGCTTCTGCTGCAACAACTGACCCAATTCATAAGGGCTCTAGGGATGATCTCATATCTCCTGTTTCTTGGAGGCAGTTTGAGTTCTCGAGGTTTTCACAACCTGATGCTGATGCTGTCAATGTCAATTTCAATGGCTCCTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

178

Amino Acids

19.8

Weight (kDa)

4.85

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	222, 268, 520
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	475
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	3 cut(s)	127, 161, 377
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	526
BmsI	GCATC	2 cut(s)	484, 490
BsaBI	GATNNNNATC	2 cut(s)	103, 114
BsaJI	CCNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	2 cut(s)	103, 114
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	304, 388, 439
BseJI	GATNNNNATC	2 cut(s)	103, 114
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	170, 517
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	82, 428
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	98, 206, 436
BspHI	TCATGA	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	98, 206, 436
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	141, 147
BstAUI	TGTACA	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	304, 388, 439
BstKTI	GATC	3 cut(s)	101, 209, 439
BstMBI	GATC	3 cut(s)	98, 206, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 398
BstNSI	RCATGY	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZ17I	GTATAC	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	304, 388, 439
CciI	TCATGA	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	190, 362, 534
CviJI	RGCY	5 cut(s)	91, 171, 253, 426, 525
CviKI_1	RGCY	5 cut(s)	91, 171, 253, 426, 525
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	3 cut(s)	100, 208, 438
DpnII	GATC	3 cut(s)	98, 206, 436
Eam1104I	CTCTTC	2 cut(s)	141, 147
EarI	CTCTTC	2 cut(s)	141, 147
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	193, 365, 537
FatI	CATG	3 cut(s)	189, 361, 533
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	3 cut(s)	311, 395, 446
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	193, 365, 537
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	80, 245, 292
Hpy188I	TCNGA	2 cut(s)	58, 109
Hpy188III	TCNNGA	3 cut(s)	268, 475, 534
Hpy8I	GTNNAC	3 cut(s)	80, 245, 292
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	80, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 398
Hsp92II	CATG	3 cut(s)	193, 365, 537
Kzo9I	GATC	3 cut(s)	98, 206, 436
LmnI	GCTCC	1 cut(s)	530
LpnPI	CCDG	4 cut(s)	106, 305, 462, 504
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	2 cut(s)	484, 490
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	100, 208, 438
MboI	GATC	3 cut(s)	98, 206, 436
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	82, 428
MluCI	AATT	3 cut(s)	281, 414, 514
MnlI	CCTC	6 cut(s)	142, 148, 151, 221, 453, 471
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	77, 398
NdeII	GATC	3 cut(s)	98, 206, 436
NlaIII	CATG	3 cut(s)	193, 365, 537
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	475
PagI	TCATGA	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	98, 206, 436
SduI	GDGCHC	2 cut(s)	82, 428
SetI	ASST	3 cut(s)	379, 482, 493
SfaNI	GCATC	2 cut(s)	484, 490
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	475
SlaI	CTCGAG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	3 cut(s)	281, 414, 514
SspMI	CTAG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	258
TaqI	TCGA	1 cut(s)	476
TasI	AATT	3 cut(s)	281, 414, 514
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	206, 315, 407, 522
VneI	GTGCAC	1 cut(s)	78
XceI	RCATGY	1 cut(s)	365
XhoI	CTCGAG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.