Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Reverse (-)

433749 .. 434910

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG006600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAAAGACTTGTGCTTCTTCCTTTTACCATTGGTTGTGTTTCTGAATCAAGCATTGCTGTTGGTGCACAACAACAGCCCAGAAGATCAAAATCAGATACAAATCCATCTCCAATAAGAACCAAAGAAGAAGAAGAGGAAGAGGAGGAAGGAGATGGCTTATCAAGTGGTGAGAACATGAAGAACTCATTTAGATCCCTCGCTCTTTCAAAACCAAACATATCTGTTGGTATACATAGGCTCTCCAAGGGTTTCAAGACTTTTTCGCAATTGTTTGCATGTGTTGAAACAGTTATTGTAGAGGAAAATTATGATAATAACCGAGGAAGAAAGATTTCTGTTAAAAAACGAAACCAGGTGAGGCGAGGAGGGATGACTATATATGGCCAACAAACAAGCAAGCAAGCTATCTTTGGTGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

8.97

Isoelectric Point (pI)

64.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	210, 256, 287
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	385
ApaLI	GTGCAC	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	182, 370
BaeGI	GKGCMC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	356
BsaBI	GATNNNNATC	2 cut(s)	91, 102
BsaJI	CCNNGG	2 cut(s)	246, 322
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	2 cut(s)	91, 102
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	246, 322
BseGI	GGATG	1 cut(s)	378
BseJI	GATNNNNATC	2 cut(s)	91, 102
BseMI	GCAATG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	158, 381
BseSI	GKGCMC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	86, 194
BspANI	GGCC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	246, 322
BssMI	GATC	2 cut(s)	86, 194
BssNAI	GTATAC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	2 cut(s)	129, 135
BstC8I	GCNNGC	2 cut(s)	401, 405
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	2 cut(s)	89, 197
BstMBI	GATC	2 cut(s)	86, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BstZ17I	GTATAC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	401, 405
CsiI	ACCWGGT	1 cut(s)	354
CviAII	CATG	2 cut(s)	178, 279
CviJI	RGCY	5 cut(s)	79, 159, 241, 387, 407
CviKI_1	RGCY	5 cut(s)	79, 159, 241, 387, 407
DpnI	GATC	2 cut(s)	88, 196
DpnII	GATC	2 cut(s)	86, 194
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	129, 135
EarI	CTCTTC	2 cut(s)	129, 135
Eco130I	CCWWGG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	181, 282
FaiI	YATR	9 cut(s)	179, 221, 233, 237, 280, 312, 380, 382, 384
FatI	CATG	2 cut(s)	177, 278
FblI	GTMKAC	1 cut(s)	232
FokI	GGATG	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	181, 282
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	2 cut(s)	182, 370
Hpy166II	GTNNAC	2 cut(s)	68, 233
Hpy188I	TCNGA	2 cut(s)	46, 97
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	68, 233
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	68, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	181, 282
Kzo9I	GATC	2 cut(s)	86, 194
LpnPI	CCDG	3 cut(s)	94, 341, 368
MabI	ACCWGGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	88, 196
MboI	GATC	2 cut(s)	86, 194
MboII	GAAGA	8 cut(s)	11, 96, 140, 143, 146, 152, 193, 339
MfeI	CAATTG	1 cut(s)	269
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	2 cut(s)	269, 307
MluNI	TGGCCA	1 cut(s)	387
MnlI	CCTC	9 cut(s)	130, 136, 139, 209, 295, 317, 354, 359, 362
Mox20I	TGGCCA	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	2 cut(s)	86, 194
NlaIII	CATG	2 cut(s)	181, 282
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	86, 194
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	2 cut(s)	360, 409
SexAI	ACCWGGT	1 cut(s)	354
Sse9I	AATT	2 cut(s)	269, 307
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	292
TasI	AATT	2 cut(s)	269, 307
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	66
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.