Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Forward (+)

32053987 .. 32055203

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1244300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGAGAAAGAATGGAAAGATTCATTCTTCTTCCTTACGCAATTGGTTGCGTTTCTGAATCGAGCGTTGCTGTTGCCGGCGTGAAGCAGCAGCCGCCCAGAAGATCAAAACCGGACACAAAGCCGTCTCCAATAAGAACTAAAGAAGCTGAGGAGGAAGAAGATGAAGAAGATAGCTTAACGGGCGAAAGCATGAAGAACTCGTTTAGATCCCTGGCTCTTCCGAAACCAAACATATCAATCGGTATTCATAGGCTCGTCAAGGGTTTCAAGAACTTCTCTCAGCAATTTGTTTACAAGGATGATATGGAAGAAGTGCTGGAAATGGATATGGAAATAGGGTGTCCAACGGATGTGAAACATGTGACACACATAGGTTGGGACGCTTCCACTTCAGCTTCCGCTGCCTCTGCAACAACTGACCCCTTTGGGGGCTGGGATAATCTCGTATCGCCTGATCTGCTCTCTGTTTCCCCTGTTTCTTGGAGGCAATTTGAGCTCTCTGTGCCCTCACAATCTGAAGCTGCAGTACCACCTCTTGTCCATGGTTCTTCTTCTAAATTTGTTGAAAAGAGTGGTGGAGGGATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

198

Amino Acids

21.62

Weight (kDa)

5.07

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 402
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	2 cut(s)	378, 540
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	430, 431
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	271, 569
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	5 cut(s)	149, 177, 398, 499, 524
AluI	AGCT	5 cut(s)	149, 177, 398, 499, 524
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	204
ApeKI	GCWGC	4 cut(s)	88, 91, 404, 524
ApoI	RAATTY	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	501
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
Bbv12I	GWGCWC	1 cut(s)	501
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	100, 103, 391, 511
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	5 cut(s)	89, 92, 95, 405, 525
BlsI	GCNGC	5 cut(s)	90, 93, 96, 406, 526
Bme1390I	CCNGG	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	213, 544
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 431
Bse118I	RCCGGY	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	213, 544
BseGI	GGATG	3 cut(s)	307, 358, 591
BseLI	CCNNNNNNNGG	2 cut(s)	430, 431
BseMII	CTCAG	2 cut(s)	141, 296
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	4 cut(s)	100, 103, 391, 511
BseYI	CCCAGC	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	501
BsiSI	CCGG	2 cut(s)	78, 113
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	430, 431
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	501, 510
Bsp143I	GATC	3 cut(s)	104, 209, 457
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	2 cut(s)	95, 402
BspCNI	CTCAG	2 cut(s)	142, 295
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	213, 544
BssMI	GATC	3 cut(s)	104, 209, 457
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	150, 282
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	307, 358, 591
BstKTI	GATC	3 cut(s)	107, 212, 460
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	3 cut(s)	104, 209, 457
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 183, 404, 410, 460, 496, 505
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	4 cut(s)	100, 103, 391, 511
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	307, 358, 591
Cac8I	GCNNGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	77
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	3 cut(s)	193, 362, 545
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	2 cut(s)	150, 282
DpnI	GATC	3 cut(s)	106, 211, 459
DpnII	GATC	3 cut(s)	104, 209, 457
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	501
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	378, 540
EcoICRI	GAGCTC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	3 cut(s)	196, 365, 548
FaiI	YATR	8 cut(s)	194, 236, 252, 308, 332, 363, 374, 546
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	3 cut(s)	192, 361, 544
Fnu4HI	GCNGC	5 cut(s)	89, 92, 95, 405, 525
FokI	GGATG	2 cut(s)	314, 365
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	5 cut(s)	89, 92, 95, 405, 525
GluI	GCNGC	5 cut(s)	89, 92, 95, 405, 525
GsaI	CCCAGC	1 cut(s)	439
HapII	CCGG	2 cut(s)	78, 113
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	196, 365, 548
HinfI	GANTC	2 cut(s)	21, 59
HpaII	CCGG	2 cut(s)	78, 113
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	58, 225, 520
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	413, 527
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 183, 404, 410, 460, 496, 505
HpyF3I	CTNAG	2 cut(s)	150, 282
Hsp92II	CATG	3 cut(s)	196, 365, 548
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	104, 209, 457
LguI	GCTCTTC	1 cut(s)	225
LpnPI	CCDG	9 cut(s)	91, 112, 126, 200, 227, 305, 421, 468, 489
Lsp1109I	GCAGC	4 cut(s)	100, 103, 391, 511
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	106, 211, 459
MboI	GATC	3 cut(s)	104, 209, 457
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	501, 510
MluCI	AATT	4 cut(s)	42, 287, 491, 560
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	7 cut(s)	145, 148, 418, 480, 520, 546, 575
MroNI	GCCGGC	1 cut(s)	77
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	78, 113
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	7 cut(s)	94, 183, 404, 410, 460, 496, 505
NaeI	GCCGGC	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	3 cut(s)	104, 209, 457
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	3 cut(s)	196, 365, 548
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	21, 59
PkrI	GCNGC	5 cut(s)	90, 93, 96, 406, 526
PscI	ACATGT	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	5 cut(s)	89, 92, 95, 405, 525
Sau3AI	GATC	3 cut(s)	104, 209, 457
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	501, 510
SetI	ASST	7 cut(s)	151, 179, 379, 400, 501, 526, 538
SfcI	CTRYAG	1 cut(s)	525
Sse9I	AATT	4 cut(s)	42, 287, 491, 560
SsiI	CCGC	2 cut(s)	95, 402
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	544
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	42, 287, 491, 560
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	21, 59
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	4 cut(s)	88, 91, 404, 524
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	13, 180, 209, 239
TspGWI	ACGGA	1 cut(s)	365
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.