Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Reverse (-)

324310 .. 325396

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGAGAAAGAATGGAAAGGCTTGTGCTTCTTCCTTTCACTATTGGGTGCGTTTCTGAGTCAAGCATTGCTGTTGGTGCACAACAACATCCCAGAAGATCCAAATCAGATACAAATCCATCTCCAACAAGAACTAAAGAAGAAGAAGAGGACGAGGAGGAAGGAGATAGCCTTTCAAAACCAAACGTATCTGTTGGTATACACAGGCTCTTCAAGGGTTTCAAGAATTTTTCTCAGTTGTTTGTTTACAAGGATGAAATGGAAGAAGAAGAAATGGATATGGAAATAGGGTCTCCTACAGATGTGAAGCATGTGACACACATAGGTCTGGATGGTTCTGGTTCTGGTTCTGGTTCTGCTGCTACTGCTGCAACAACTAATAAGGTCTCCTGGGATGATCTTATATCTCATGTTTCTTGGAGGCAGTTCGAGCTCTCTAGGCCTTCACAATCTGATGCTGATGATGATGCTATCCATGTCAATTCAGTGGCTCCTCTTCATGAATACTTGTCTAAATCGAGTCATAGAATGATGAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

181

Amino Acids

20.06

Weight (kDa)

5.05

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	177, 214, 223
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
Alw21I	GWGCWC	2 cut(s)	82, 435
Alw26I	GTCTC	2 cut(s)	297, 391
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	440
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	359, 368
ApoI	RAATTY	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	2 cut(s)	82, 435
BbvI	GCAGC	2 cut(s)	346, 355
BccI	CCATC	2 cut(s)	127, 326
BciT130I	CCWGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	297, 391
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	2 cut(s)	360, 369
BlsI	GCNGC	2 cut(s)	361, 370
Bme1390I	CCNGG	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	445, 457
BsaBI	GATNNNNATC	2 cut(s)	103, 114
BsaI	GGTCTC	2 cut(s)	297, 391
BsaJI	CCNNGG	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	2 cut(s)	103, 114
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	4 cut(s)	88, 259, 337, 400
BseJI	GATNNNNATC	2 cut(s)	103, 114
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	48, 248
BseRI	GAGGAG	2 cut(s)	170, 483
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	346, 355
BshFI	GGCC	1 cut(s)	442
BsiHKAI	GWGCWC	2 cut(s)	82, 435
BsmAI	GTCTC	2 cut(s)	297, 391
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	2 cut(s)	297, 391
Bsp1286I	GDGCHC	2 cut(s)	82, 435
Bsp143I	GATC	2 cut(s)	98, 397
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	49, 247
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	2 cut(s)	297, 391
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	2 cut(s)	98, 397
BssNAI	GTATAC	1 cut(s)	200
Bst1107I	GTATAC	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	391
Bst6I	CTCTTC	3 cut(s)	141, 215, 501
BstDEI	CTNAG	2 cut(s)	57, 234
BstF5I	GGATG	4 cut(s)	88, 259, 337, 400
BstKTI	GATC	2 cut(s)	101, 400
BstMAI	GTCTC	2 cut(s)	297, 391
BstMBI	GATC	2 cut(s)	98, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 365, 368, 430, 439
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	346, 355
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	4 cut(s)	88, 259, 337, 400
BtsIMutI	CAGTG	1 cut(s)	492
CciI	TCATGA	1 cut(s)	499
CviAII	CATG	4 cut(s)	311, 410, 476, 500
CviJI	RGCY	6 cut(s)	22, 171, 208, 433, 442, 491
CviKI_1	RGCY	6 cut(s)	22, 171, 208, 433, 442, 491
DdeI	CTNAG	2 cut(s)	57, 234
DpnI	GATC	2 cut(s)	100, 399
DpnII	GATC	2 cut(s)	98, 397
Eam1104I	CTCTTC	3 cut(s)	141, 215, 501
EarI	CTCTTC	3 cut(s)	141, 215, 501
Ecl136II	GAGCTC	1 cut(s)	433
Eco147I	AGGCCT	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	435
Eco31I	GGTCTC	2 cut(s)	297, 391
Eco53kI	GAGCTC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	4 cut(s)	314, 413, 479, 503
FaiI	YATR	9 cut(s)	200, 281, 312, 323, 404, 411, 477, 501, 525
FatI	CATG	4 cut(s)	310, 409, 475, 499
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	360, 369
FokI	GGATG	4 cut(s)	75, 266, 344, 407
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	2 cut(s)	360, 369
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	2 cut(s)	360, 369
HaeIII	GGCC	1 cut(s)	442
Hin1II	CATG	4 cut(s)	314, 413, 479, 503
HinfI	GANTC	3 cut(s)	59, 520, 535
Hpy166II	GTNNAC	3 cut(s)	80, 200, 247
Hpy188I	TCNGA	3 cut(s)	58, 109, 454
Hpy188III	TCNNGA	3 cut(s)	223, 329, 500
Hpy8I	GTNNAC	3 cut(s)	80, 200, 247
HpyAV	CCTTC	2 cut(s)	155, 453
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	80, 371
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 365, 368, 430, 439
HpyF3I	CTNAG	2 cut(s)	57, 234
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	314, 413, 479, 503
Kzo9I	GATC	2 cut(s)	98, 397
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	8 cut(s)	106, 190, 314, 324, 330, 336, 376, 403
Lsp1109I	GCAGC	2 cut(s)	346, 355
LweI	GCATC	2 cut(s)	445, 457
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	2 cut(s)	100, 399
MboI	GATC	2 cut(s)	98, 397
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	82, 435
MluCI	AATT	2 cut(s)	226, 481
MlyI	GAGTC	2 cut(s)	68, 529
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	142, 148, 151, 414, 504
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	5 cut(s)	77, 365, 368, 430, 439
NdeII	GATC	2 cut(s)	98, 397
NlaIII	CATG	4 cut(s)	314, 413, 479, 503
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	314
PagI	TCATGA	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	2 cut(s)	361, 370
PleI	GAGTC	2 cut(s)	67, 528
PpsI	GAGTC	2 cut(s)	67, 528
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	360, 369
Sau3AI	GATC	2 cut(s)	98, 397
SchI	GAGTC	2 cut(s)	68, 529
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	2 cut(s)	82, 435
SetI	ASST	4 cut(s)	189, 328, 387, 435
SfaNI	GCATC	2 cut(s)	445, 457
SfcI	CTRYAG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	226, 481
SseBI	AGGCCT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	389
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	429, 518
TasI	AATT	2 cut(s)	226, 481
TfiI	GAWTC	1 cut(s)	535
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	359, 368
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	270, 488, 516
TspRI	CASTG	1 cut(s)	492
VneI	GTGCAC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.