Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Reverse (-)

9231 .. 10074

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggaaagacttgtgcttcttcctttcaccattggttgtgtttctgaatcaagcattgctgttggtgcacaacaacagcccagaagatcaaaatcagatacaaatccatctccaataagaaccaaagaagaagaagaggaagaggaggaaggagatggcttatcaagtggtgagaacatgaagaactcatttagatccctcgctctttcaaaaccaaacatatctgttggtatacataggctctccaagggtttcaagactttttctcaattgtttggtaagtctctagaaatggggttatcatttgttcaatttagattgataattgtgatcaacatatctgttggtatacataggctctccaagggtttcaagactttttctcaattgtttgtgtacaaggatgaaatggaagaagaagaactggaaatggatatggaaatagggtgtcctacagatgtgaagcatgtgacacacataggtttggatggttctgcttctgccgcaacaactggcccaattcataagggctctagggatgatctcatatctcctgtttcttggaggcagtttgagctctcgaggttttcacaacctgatgctgatgctgtcaatgtcaatttcaatggctcctcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

213

Amino Acids

23.53

Weight (kDa)

5.32

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	232, 349
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	210, 256, 311, 373, 625
AluBI	AGCT	1 cut(s)	577
AluI	AGCT	1 cut(s)	577
Alw21I	GWGCWC	2 cut(s)	70, 579
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	2 cut(s)	19, 182
AvaI	CYCGRG	1 cut(s)	580
BaeGI	GKGCMC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	533, 579
Bbv12I	GWGCWC	2 cut(s)	70, 579
BccI	CCATC	3 cut(s)	115, 149, 482
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	2 cut(s)	287, 534
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	631
BmsI	GCATC	2 cut(s)	589, 595
BsaBI	GATNNNNATC	2 cut(s)	91, 102
BsaJI	CCNNGG	2 cut(s)	246, 363
Bse1I	ACTGG	2 cut(s)	429, 517
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	2 cut(s)	91, 102
BseDI	CCNNGG	2 cut(s)	246, 363
BseGI	GGATG	3 cut(s)	409, 493, 544
BseJI	GATNNNNATC	2 cut(s)	91, 102
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	429, 517
BseRI	GAGGAG	2 cut(s)	158, 622
BseSI	GKGCMC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	516
BsiHKAI	GWGCWC	2 cut(s)	70, 579
BsiHKCI	CYCGRG	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	580
Bsp1286I	GDGCHC	3 cut(s)	70, 533, 579
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	86, 194, 330, 541
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	516
BspHI	TCATGA	1 cut(s)	638
BspLI	GGNNCC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	429, 517
BssECI	CCNNGG	2 cut(s)	246, 363
BssMI	GATC	4 cut(s)	86, 194, 330, 541
BssNAI	GTATAC	2 cut(s)	233, 350
BssT1I	CCWWGG	2 cut(s)	246, 363
Bst1107I	GTATAC	2 cut(s)	233, 350
Bst6I	CTCTTC	2 cut(s)	129, 135
BstAUI	TGTACA	1 cut(s)	396
BstF5I	GGATG	3 cut(s)	409, 493, 544
BstKTI	GATC	4 cut(s)	89, 197, 333, 544
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	4 cut(s)	86, 194, 330, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 503, 574
BstNSI	RCATGY	1 cut(s)	470
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BstZ17I	GTATAC	2 cut(s)	233, 350
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	409, 493, 544
CciI	TCATGA	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	178, 467, 639
CviJI	RGCY	8 cut(s)	79, 159, 241, 358, 516, 531, 577, 630
CviKI_1	RGCY	8 cut(s)	79, 159, 241, 358, 516, 531, 577, 630
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	4 cut(s)	88, 196, 332, 543
DpnII	GATC	4 cut(s)	86, 194, 330, 541
Eam1104I	CTCTTC	2 cut(s)	129, 135
EarI	CTCTTC	2 cut(s)	129, 135
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	246, 363
Eco24I	GRGCYC	2 cut(s)	533, 579
Eco53kI	GAGCTC	1 cut(s)	577
Eco88I	CYCGRG	1 cut(s)	580
EcoICRI	GAGCTC	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	246, 363
EcoT38I	GRGCYC	2 cut(s)	533, 579
ErhI	CCWWGG	2 cut(s)	246, 363
FaeI	CATG	3 cut(s)	181, 470, 642
FatI	CATG	3 cut(s)	177, 466, 638
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	2 cut(s)	232, 349
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	3 cut(s)	416, 500, 551
FriOI	GRGCYC	2 cut(s)	533, 579
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	2 cut(s)	287, 534
GluI	GCNGC	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	516
Hin1II	CATG	3 cut(s)	181, 470, 642
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	2 cut(s)	19, 182
Hpy166II	GTNNAC	4 cut(s)	68, 233, 350, 397
Hpy188I	TCNGA	2 cut(s)	46, 97
Hpy188III	TCNNGA	5 cut(s)	256, 287, 373, 580, 639
Hpy8I	GTNNAC	4 cut(s)	68, 233, 350, 397
HpyAV	CCTTC	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 503, 574
Hsp92II	CATG	3 cut(s)	181, 470, 642
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	86, 194, 330, 541
LmnI	GCTCC	1 cut(s)	635
LpnPI	CCDG	5 cut(s)	94, 410, 498, 567, 609
LweI	GCATC	2 cut(s)	589, 595
MaeI	CTAG	2 cut(s)	287, 534
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	4 cut(s)	88, 196, 332, 543
MboI	GATC	4 cut(s)	86, 194, 330, 541
MfeI	CAATTG	2 cut(s)	269, 386
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	3 cut(s)	70, 533, 579
MluCI	AATT	6 cut(s)	269, 311, 324, 386, 519, 619
MnlI	CCTC	6 cut(s)	130, 136, 139, 209, 558, 576
MunI	CAATTG	2 cut(s)	269, 386
MwoI	GCNNNNNNNGC	3 cut(s)	65, 503, 574
NdeII	GATC	4 cut(s)	86, 194, 330, 541
NlaIII	CATG	3 cut(s)	181, 470, 642
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	580
PagI	TCATGA	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	579
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	4 cut(s)	86, 194, 330, 541
Sau96I	GGNCC	1 cut(s)	515
SduI	GDGCHC	3 cut(s)	70, 533, 579
SetI	ASST	4 cut(s)	484, 579, 587, 598
SfaNI	GCATC	2 cut(s)	589, 595
SfcI	CTRYAG	1 cut(s)	453
Sfr274I	CTCGAG	1 cut(s)	580
SlaI	CTCGAG	1 cut(s)	580
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	6 cut(s)	269, 311, 324, 386, 519, 619
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	2 cut(s)	287, 534
SstI	GAGCTC	1 cut(s)	579
StyI	CCWWGG	2 cut(s)	246, 363
TaqI	TCGA	1 cut(s)	581
TasI	AATT	6 cut(s)	269, 311, 324, 386, 519, 619
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	194, 420, 512, 627
VneI	GTGCAC	1 cut(s)	66
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	580
XmiI	GTMKAC	2 cut(s)	232, 349
XspI	CTAG	2 cut(s)	287, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.