Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Forward (+)

24297267 .. 24298298

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTACCAGAGCAACTCATGCTCTTCTACTATATCAAACCATTTTCCACTCCCAATTTTGCATTTTCCCAACCACCATTTCTCCACATTTCCATCTCTCTCTTCGTTTGCGCTGTTTGATGGGAAAATGAGAGAAAGAATGGAAAGATTCGTTCTTCTTCCTTTCGCCATCGGTTGCATTTCTGAATCGAGCGTTGCTGTTGGCGGTGTGCAGCAGCAGCGGCCCAGAAGATCAAAACCGGACACAAATCCGTCTGCAATAAGAACTAAAGAAGCCGAAGAGGAAGAAGATGAAGAAGACAGAATATCCGGCGAAAGCATGAAGAACACGTTTAGATCCCTGGCTCTTCCAAAACCAAACATATCAACCGGTGTTCATAGGCTCTTCAAGGGTTTCAAGAACTTCTCTCAGTTATTTGTTTACAAGGATGATATGGAAGAAGTGCTGGAAATGGATATGGAAATAGGGTGTCCTACAGATGTGAAGCATGTGACACACATAGGTTGGGACGCTTCTGCTTCCGCTGCCTCTGCAACAACTGATCCTGTTAGGGGCTGGGATAATCTCGTATCGCCTGATCTGCTCTCTGTTTCCCCTCTTTCTTGGAGGCAATTTGAGCTCTCTGTGCCGTCACAAGCTGAAGCTGCAGTACCACCTCTTGTTCATGGCTCTTCGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

227

Amino Acids

25.11

Weight (kDa)

5.47

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	204, 220, 522
AclWI	GGATC	2 cut(s)	330, 536
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	2 cut(s)	5, 651
AfiI	CCNNNNNNNGG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	327
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	388, 397
AjnI	CCWGG	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	3 cut(s)	619, 638, 644
AluI	AGCT	3 cut(s)	619, 638, 644
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	2 cut(s)	330, 536
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	5 cut(s)	211, 214, 217, 524, 644
AsiGI	ACCGGT	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	621
BarI	GAAGNNNNNNTAC	2 cut(s)	633, 665
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	5 cut(s)	223, 226, 229, 511, 631
BccI	CCATC	3 cut(s)	100, 113, 176
BceAI	ACGGC	1 cut(s)	613
BciT130I	CCWGG	1 cut(s)	341
BfmI	CTRYAG	2 cut(s)	474, 645
BisI	GCNGC	6 cut(s)	212, 215, 218, 221, 525, 645
BlsI	GCNGC	6 cut(s)	213, 216, 219, 222, 526, 646
Bme1390I	CCNGG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	2 cut(s)	238, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse118I	RCCGGY	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	422
BseXI	GCAGC	5 cut(s)	223, 226, 229, 511, 631
BseYI	CCCAGC	1 cut(s)	555
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	3 cut(s)	239, 309, 369
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	230, 335, 541, 577
BspACI	CCGC	3 cut(s)	204, 220, 522
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	421
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	2 cut(s)	330, 536
BspQI	GCTCTTC	4 cut(s)	28, 351, 389, 676
BsrFI	RCCGGY	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	4 cut(s)	230, 335, 541, 577
Bst2UI	CCWGG	1 cut(s)	341
Bst6I	CTCTTC	6 cut(s)	28, 106, 273, 351, 389, 676
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	4 cut(s)	233, 338, 544, 580
BstMBI	GATC	4 cut(s)	230, 335, 541, 577
BstMWI	GCNNNNNNNGC	9 cut(s)	18, 217, 220, 524, 530, 580, 616, 625, 644
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	2 cut(s)	474, 645
BstV1I	GCAGC	5 cut(s)	223, 226, 229, 511, 631
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	433
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	4, 650
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	4 cut(s)	18, 319, 488, 665
CviJI	RGCY	9 cut(s)	223, 275, 344, 382, 555, 619, 638, 644, 669
CviKI_1	RGCY	9 cut(s)	223, 275, 344, 382, 555, 619, 638, 644, 669
CviQI	GTAC	2 cut(s)	4, 650
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	4 cut(s)	232, 337, 543, 579
DpnII	GATC	4 cut(s)	230, 335, 541, 577
Eam1104I	CTCTTC	6 cut(s)	28, 106, 273, 351, 389, 676
EarI	CTCTTC	6 cut(s)	28, 106, 273, 351, 389, 676
Ecl136II	GAGCTC	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	621
FaeI	CATG	4 cut(s)	21, 322, 491, 668
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	4 cut(s)	17, 318, 487, 664
Fnu4HI	GCNGC	6 cut(s)	212, 215, 218, 221, 525, 645
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	6 cut(s)	212, 215, 218, 221, 525, 645
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	6 cut(s)	212, 215, 218, 221, 525, 645
GsaI	CCCAGC	1 cut(s)	559
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	3 cut(s)	239, 309, 369
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	21, 322, 491, 668
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	147, 185
HpaII	CCGG	3 cut(s)	239, 309, 369
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	6 cut(s)	61, 177, 211, 257, 533, 647
HpyF10VI	GCNNNNNNNGC	9 cut(s)	18, 217, 220, 524, 530, 580, 616, 625, 644
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	4 cut(s)	21, 322, 491, 668
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	4 cut(s)	230, 335, 541, 577
LguI	GCTCTTC	4 cut(s)	28, 351, 389, 676
Lsp1109I	GCAGC	5 cut(s)	223, 226, 229, 511, 631
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	490, 630
MalI	GATC	4 cut(s)	232, 337, 543, 579
MboI	GATC	4 cut(s)	230, 335, 541, 577
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	2 cut(s)	54, 611
MnlI	CCTC	5 cut(s)	274, 538, 600, 606, 666
MseI	TTAA	1 cut(s)	679
MspA1I	CMGCKG	2 cut(s)	220, 524
MspI	CCGG	3 cut(s)	239, 309, 369
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	9 cut(s)	18, 217, 220, 524, 530, 580, 616, 625, 644
NdeII	GATC	4 cut(s)	230, 335, 541, 577
NlaIII	CATG	4 cut(s)	21, 322, 491, 668
NmuCI	GTSAC	2 cut(s)	490, 630
NspI	RCATGY	1 cut(s)	491
PciSI	GCTCTTC	4 cut(s)	28, 351, 389, 676
PfeI	GAWTC	2 cut(s)	147, 185
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	6 cut(s)	213, 216, 219, 222, 526, 646
Psp124BI	GAGCTC	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	2 cut(s)	5, 651
RsaNI	GTAC	2 cut(s)	4, 650
SacI	GAGCTC	1 cut(s)	621
SapI	GCTCTTC	4 cut(s)	28, 351, 389, 676
SaqAI	TTAA	1 cut(s)	679
SatI	GCNGC	6 cut(s)	212, 215, 218, 221, 525, 645
Sau3AI	GATC	4 cut(s)	230, 335, 541, 577
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	621
SetI	ASST	6 cut(s)	332, 505, 621, 640, 646, 658
SfcI	CTRYAG	2 cut(s)	474, 645
Sse9I	AATT	2 cut(s)	54, 611
SsiI	CCGC	3 cut(s)	204, 220, 522
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	339
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	54, 611
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	147, 185
Tru1I	TTAA	1 cut(s)	679
Tru9I	TTAA	1 cut(s)	679
TseFI	GTSAC	2 cut(s)	490, 630
TseI	GCWGC	5 cut(s)	211, 214, 217, 524, 644
Tsp45I	GTSAC	2 cut(s)	490, 630
TspDTI	ATGAA	4 cut(s)	306, 335, 365, 653
TspGWI	ACGGA	1 cut(s)	240
XceI	RCATGY	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.