Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Reverse (-)

435872 .. 436873

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGAGAAAGAATGGAAAGACTTGTGCTTCTTCCTTTCACCATTGGTTGTGTTTCTGAATCAAGCATTGCTGTTGGTGCACAACAACAGCCCAGAAGATCAAAATCAGATACAAATCCATCTCCAATAAGAACCAAAGAAGAAGAAGAGGAAGAGGAGGAAGGAGATGGCTTATCAAGTGGTGAGAACATGAAGAACTCATTTAGATCCCTCGCTCTTTCAAAACCAAACATATCTGTTGGTATACATAGGCTCTCCAAGGGTTTCAAGACTTTTTCTCAATTGTTTGTGTACAAGGATGAAATGGAAGAAGAACTGGAAATGGATATGGAAATAGGATGTCCTACAGATGTGAAGCATGTGACACACATAGGTTTGGATGGTTCTGCTTCTGCTGCAACAACTGACCCAATTCATAAGGGCTCTAGGGATGATCTCATATCTCCTGTTTCTTGGAGGCAGTTTGAGCTCTCGAGGTTTTCACAACCTGATGCTGATGCTGTCAATGTCAATTTCAATGGCTCCTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

177

Amino Acids

19.64

Weight (kDa)

4.91

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	222, 268, 517
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Alw21I	GWGCWC	2 cut(s)	82, 471
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	472
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	31, 194
AvaI	CYCGRG	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	82
BanII	GRGCYC	2 cut(s)	425, 471
Bbv12I	GWGCWC	2 cut(s)	82, 471
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	3 cut(s)	127, 161, 374
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	472
BmiI	GGNNCC	1 cut(s)	523
BmsI	GCATC	2 cut(s)	481, 487
BsaBI	GATNNNNATC	2 cut(s)	103, 114
BsaJI	CCNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	2 cut(s)	103, 114
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	4 cut(s)	304, 344, 385, 436
BseJI	GATNNNNATC	2 cut(s)	103, 114
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	2 cut(s)	170, 514
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	382
BsiHKAI	GWGCWC	2 cut(s)	82, 471
BsiHKCI	CYCGRG	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	472
Bsp1286I	GDGCHC	3 cut(s)	82, 425, 471
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	98, 206, 433
BspHI	TCATGA	1 cut(s)	530
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	98, 206, 433
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	141, 147
BstAUI	TGTACA	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	304, 344, 385, 436
BstKTI	GATC	3 cut(s)	101, 209, 436
BstMBI	GATC	3 cut(s)	98, 206, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 395, 466
BstNSI	RCATGY	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZ17I	GTATAC	1 cut(s)	245
BtsCI	GGATG	4 cut(s)	304, 344, 385, 436
CciI	TCATGA	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	190, 359, 531
CviJI	RGCY	6 cut(s)	91, 171, 253, 423, 469, 522
CviKI_1	RGCY	6 cut(s)	91, 171, 253, 423, 469, 522
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	3 cut(s)	100, 208, 435
DpnII	GATC	3 cut(s)	98, 206, 433
Eam1104I	CTCTTC	2 cut(s)	141, 147
EarI	CTCTTC	2 cut(s)	141, 147
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	2 cut(s)	425, 471
Eco53kI	GAGCTC	1 cut(s)	469
Eco88I	CYCGRG	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	2 cut(s)	425, 471
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	193, 362, 534
FatI	CATG	3 cut(s)	189, 358, 530
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	4 cut(s)	311, 351, 392, 443
FriOI	GRGCYC	2 cut(s)	425, 471
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	1 cut(s)	396
Hin1II	CATG	3 cut(s)	193, 362, 534
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	2 cut(s)	31, 194
Hpy166II	GTNNAC	3 cut(s)	80, 245, 292
Hpy188I	TCNGA	2 cut(s)	58, 109
Hpy188III	TCNNGA	3 cut(s)	268, 472, 531
Hpy8I	GTNNAC	3 cut(s)	80, 245, 292
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	80, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 395, 466
Hsp92II	CATG	3 cut(s)	193, 362, 534
Kzo9I	GATC	3 cut(s)	98, 206, 433
LmnI	GCTCC	1 cut(s)	527
LpnPI	CCDG	4 cut(s)	106, 302, 459, 501
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	481, 487
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	100, 208, 435
MboI	GATC	3 cut(s)	98, 206, 433
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	3 cut(s)	82, 425, 471
MluCI	AATT	3 cut(s)	281, 411, 511
MnlI	CCTC	6 cut(s)	142, 148, 151, 221, 450, 468
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	77, 395, 466
NdeII	GATC	3 cut(s)	98, 206, 433
NlaIII	CATG	3 cut(s)	193, 362, 534
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	472
PagI	TCATGA	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	471
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	98, 206, 433
SduI	GDGCHC	3 cut(s)	82, 425, 471
SetI	ASST	4 cut(s)	376, 471, 479, 490
SfaNI	GCATC	2 cut(s)	481, 487
SfcI	CTRYAG	1 cut(s)	345
Sfr274I	CTCGAG	1 cut(s)	472
SlaI	CTCGAG	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
Sse9I	AATT	3 cut(s)	281, 411, 511
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	258
TaqI	TCGA	1 cut(s)	473
TasI	AATT	3 cut(s)	281, 411, 511
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	206, 315, 404, 519
VneI	GTGCAC	1 cut(s)	78
XceI	RCATGY	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.