Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014995

Physical Location & Seq

Genomic Coordinates Forward (+)

49501364 .. 49502092

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAAGACTTGTGCTTCTTCCGTTCACCATTGGTTGTGTTTCTGAATCAAGCATTGCTGTTGGTGCACAACAACAGCCCAGAAGATCAAAATCAGATACAAATCCATCTCCAATAAGAACCAAAGGAGAAGAAGAGGAAGAGGAGGAAGGAGATAGCTTATCAAGTGGTGAGAACATGAAGAACTCAGCTAGATCCCTGGCTCCTTCAAAACCAAACATATCTGTTGGTATACATAGGCTCTCCAAGGGTTTCAGGACTTTTTCTCAATTGTTTGTGTACAAGGATGAAATGGAAGAAGAAGAACTGGAAATGGATATGGAAATAGGGTGTCCTACAGATGTGAAGCATGTGACACACATAGGTTTGGATGGTTCTGCTTCTGCTGCAACAACTGACCCAATTCATAAGGGCTCTTGGGATGATCTCATATCTCCTGTTTCTTGGAGGCAGTTCGAGCTCTCGAGGCCTTCACAACCTGATGCTGATGCTGATGCTGTCAATGTCAATTTCAATGGCTCCTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0008064 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010215 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017157 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030832 GO:0030833 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0040007 GO:0042546 GO:0043062 GO:0043254 GO:0044085 GO:0044087 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0090066 GO:0098590 GO:0110053 GO:1902903 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

177

Amino Acids

19.26

Weight (kDa)

4.67

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16490
fragaria_vesca	FvH4_6g00540
malus_domestica	MD04G1244300.v1.1
prunus_persica	Prupe.6G360900_v2.0.a1
pyrus_communis	pycom04g21520 pycom12g23830
rosa_chinensis	RchiOBHm_Chr3g0447931
rosa_laevigata	RLG00000025960
rosa_multiflora	Rmu_sc0005969.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426120
rosa_rugosa	Rorug02G0607100.1
rosa_samantha	Rh3AG006400 Rh3BG005900 Rh3CG006300 Rh3DG006600
rosa_wichuraiana	Rw3G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	210, 514
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	159, 191, 460
AluI	AGCT	3 cut(s)	159, 191, 460
Alw21I	GWGCWC	2 cut(s)	70, 462
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	467
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	19, 182
AvaI	CYCGRG	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	416, 462
Bbv12I	GWGCWC	2 cut(s)	70, 462
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	115, 365
BciT130I	CCWGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	2 cut(s)	204, 520
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	472, 478, 484
BsaBI	GATNNNNATC	2 cut(s)	91, 102
BsaJI	CCNNGG	2 cut(s)	198, 246
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	2 cut(s)	91, 102
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	198, 246
BseGI	GGATG	3 cut(s)	292, 376, 427
BseJI	GATNNNNATC	2 cut(s)	91, 102
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	158, 511
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	469
BsiHKAI	GWGCWC	2 cut(s)	70, 462
BsiHKCI	CYCGRG	1 cut(s)	463
BsnI	GGCC	1 cut(s)	469
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	3 cut(s)	70, 416, 462
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	86, 194, 424
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	527
BspLI	GGNNCC	2 cut(s)	204, 520
BspPI	GGATC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	198, 246
BssMI	GATC	3 cut(s)	86, 194, 424
BssNAI	GTATAC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	200
Bst6I	CTCTTC	2 cut(s)	129, 135
BstAUI	TGTACA	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	3 cut(s)	292, 376, 427
BstKTI	GATC	3 cut(s)	89, 197, 427
BstMBI	GATC	3 cut(s)	86, 194, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 386, 457, 466
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BstZ17I	GTATAC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	469
BtsCI	GGATG	3 cut(s)	292, 376, 427
CciI	TCATGA	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	178, 350, 528
CviJI	RGCY	9 cut(s)	79, 159, 191, 203, 241, 414, 460, 469, 519
CviKI_1	RGCY	9 cut(s)	79, 159, 191, 203, 241, 414, 460, 469, 519
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	3 cut(s)	88, 196, 426
DpnII	GATC	3 cut(s)	86, 194, 424
Eam1104I	CTCTTC	2 cut(s)	129, 135
EarI	CTCTTC	2 cut(s)	129, 135
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	2 cut(s)	416, 462
Eco53kI	GAGCTC	1 cut(s)	460
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	416, 462
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	181, 353, 531
FatI	CATG	3 cut(s)	177, 349, 527
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	3 cut(s)	299, 383, 434
FriOI	GRGCYC	2 cut(s)	416, 462
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	469
Hin1II	CATG	3 cut(s)	181, 353, 531
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	2 cut(s)	19, 182
Hpy166II	GTNNAC	4 cut(s)	27, 68, 233, 280
Hpy188I	TCNGA	2 cut(s)	46, 97
Hpy188III	TCNNGA	3 cut(s)	256, 463, 528
Hpy8I	GTNNAC	4 cut(s)	27, 68, 233, 280
HpyAV	CCTTC	3 cut(s)	143, 216, 480
HpyCH4V	TGCA	2 cut(s)	68, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 386, 457, 466
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	3 cut(s)	181, 353, 531
Kzo9I	GATC	3 cut(s)	86, 194, 424
LmnI	GCTCC	2 cut(s)	208, 524
LpnPI	CCDG	7 cut(s)	94, 185, 212, 241, 293, 450, 492
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	472, 478, 484
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	3 cut(s)	88, 196, 426
MboI	GATC	3 cut(s)	86, 194, 424
MfeI	CAATTG	1 cut(s)	269
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	3 cut(s)	70, 416, 462
MluCI	AATT	3 cut(s)	269, 402, 508
MnlI	CCTC	5 cut(s)	130, 136, 139, 441, 459
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	65, 386, 457, 466
NdeII	GATC	3 cut(s)	86, 194, 424
NlaIII	CATG	3 cut(s)	181, 353, 531
NlaIV	GGNNCC	2 cut(s)	204, 520
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	463
PagI	TCATGA	1 cut(s)	527
PceI	AGGCCT	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	204, 520
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	462
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	3 cut(s)	86, 194, 424
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	70, 416, 462
SetI	ASST	5 cut(s)	161, 193, 367, 462, 481
SfaNI	GCATC	3 cut(s)	472, 478, 484
SfcI	CTRYAG	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	3 cut(s)	269, 402, 508
SseBI	AGGCCT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	246
TaqI	TCGA	2 cut(s)	456, 464
TasI	AATT	3 cut(s)	269, 402, 508
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	4 cut(s)	194, 303, 395, 516
TspGWI	ACGGA	1 cut(s)	12
VneI	GTGCAC	1 cut(s)	66
XceI	RCATGY	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	232
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.