AT5G16890

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010247
Physical Location & Seq
Forward (+)
5551627 .. 5554919
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16890.1

Sequence Viewer

Length: 1536 bp
ATGTCTGGAAAACAGCAAAATCATCGTTCTACTTCCTCCAGACCCAGATCCAAAACCCTAATCCTCATCGGCTCTCTCTTCACCGTCTCTCTACTCGTCATCCTCTACACCTCTTCTTCCTCCTCCCGAGCCTCCATCTCCAATCCCAACCCGTCGGACCGACCAGAGACGTCCTTCGTTACCTCGCTTGAGCATTTCTTAATATATAAAGCTCCGAAGCTCTCGTTACCGGTTAGAGACGACACGGTGCGTGGCGAGAGTGATGATGATGTGAGGAAGCTCGATGAGATGGTGTTCGAGAGAGAGAATCGTTGGTTGAACGAAGATCCGGGATATCCTGTTGAATTTCCGATTAAGGTTTACGTGTATGAGATGCCGAAGAAGTTTACTTTCGATCTTCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCCTGTGCATCGTCTAATCGAACAGCATTCTATTGACTATTGGCTTTGGGCTGATCTGATATCTCCTGAATCTGAAAGGCGTTTGAAAAGTGTCGTGAGAGTTCAGAAGCAGCAGGACGCCGACTTTTTCTATGTTCCGTTTTTCACTACAATCAGCTTTTTCTTGTTGGAGAAGCAGCAATGCAAAGCACTCTATAGGGAAGCTTTGAAGTGGGTCACTGATCAGCCTGCTTGGAAGAGGTCCGAGGGAAGGGATCACATATTTCCTATTCATCATCCTTGGTCCTTCAAGTCTGTCCGCAAATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGCAATTGGTATAAGCCTGGGCAAGTTTCATTGGAGAAAGACCTAATTCTTCCTTATGTTCCCAATGTTGATATCTGTGATACCAAATGCTTGTCAGAAAGTGCACCAATGAGAACCACATTACTTTTTTTCCGAGGGCGGCTTAAGCGAAATGCAGGGGGTAAAATACGTGCCAAACTTGGTGCAGAATTAAGTGGTATCAAGGATATAATAATTTCTGAGGGGACTGCCGGAGAGGGAGGAAAATTGGCAGCGCAACGTGGCATGCGTAGATCTTTATTCTGTTTGTGTCCTGCTGGTGACACACCATCTTCAGCGAGGTTGTTTGATGCCATTGTCAGTGGCTGTATACCTGTTATAGTCAGTGACGAGTTGGAATTTCCTTTTGAAGGAATACTTGATTACAAGAAGGTTGCTGTGCTTGTTTCTTCCAGTGATGCAATACAGCCAGGGTGGCTTGTAAACCATCTGAGAAGTCTTACGCCCTTCCAAGTCAAGGGGTTGCAGAATAATCTTGCTCAATACTCTCGCCATTTCCTATATTCGAGCCCTGCTCAGCCATTAGGTCCAGAGGACTTGACATGGAGAATGATAGCCGGAAAGCTGGTGAATATCAAGCTTCACACGAGGAGGTCACAGCGGGTCGTGAAAGGATCTAGGAGTATTTGCAGATGCGATTGCTGGAGATCCAACTCTACAGCCTCCAATTCTTTGAGTTCTCTCTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

511

Amino Acids

58.08

Weight (kDa)

9.31

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 117 - 424 1.3e-74 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 1153
AciI CCGC 3 cut(s) 754, 943, 1444
AclWI GGATC 5 cut(s) 42, 320, 717, 1465, 1485
AcsI RAATTY 3 cut(s) 344, 758, 1181
AcuI CTGAAG 1 cut(s) 1101
AcyI GRCGYC 2 cut(s) 170, 573
AfiI CCNNNNNNNGG 3 cut(s) 705, 1193, 1300
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 1 cut(s) 363
AgeI ACCGGT 1 cut(s) 229
AgsI TTSAA 6 cut(s) 319, 344, 541, 664, 745, 1193
AjnI CCWGG 2 cut(s) 820, 1252
AluBI AGCT 7 cut(s) 212, 220, 280, 612, 659, 1408, 1423
AluI AGCT 7 cut(s) 212, 220, 280, 612, 659, 1408, 1423
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 4 cut(s) 91, 161, 231, 422
Alw44I GTGCAC 1 cut(s) 906
AlwI GGATC 5 cut(s) 42, 320, 717, 1465, 1485
AlwNI CAGNNNCTG 1 cut(s) 1149
Ama87I CYCGRG 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 906
ApeKI GCWGC 3 cut(s) 565, 631, 1055
ApoI RAATTY 3 cut(s) 344, 758, 1181
AsiGI ACCGGT 1 cut(s) 229
AspLEI GCGC 1 cut(s) 1060
AspS9I GGNCC 4 cut(s) 157, 696, 738, 1370
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 3 cut(s) 73, 1115, 1423
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 4 cut(s) 157, 696, 738, 1370
BaeGI GKGCMC 1 cut(s) 910
BanII GRGCYC 1 cut(s) 1355
BauI CACGAG 1 cut(s) 1429
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 3 cut(s) 577, 643, 1067
BccI CCATC 4 cut(s) 143, 283, 1120, 1278
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 2 cut(s) 822, 1254
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 4 cut(s) 91, 161, 231, 422
BfaI CTAG 1 cut(s) 1461
BfmI CTRYAG 2 cut(s) 649, 1500
BfrI CTTAAG 1 cut(s) 947
BglI GCCNNNNNGGC 1 cut(s) 1258
BglII AGATCT 1 cut(s) 1076
BisI GCNGC 4 cut(s) 566, 632, 944, 1056
BlpI GCTNAGC 1 cut(s) 1359
BlsI GCNGC 4 cut(s) 567, 633, 945, 1057
Bme1390I CCNGG 3 cut(s) 330, 822, 1254
Bme18I GGWCC 4 cut(s) 157, 696, 738, 1370
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 4 cut(s) 157, 696, 738, 1370
BmrFI CCNGG 3 cut(s) 330, 822, 1254
BmsI GCATC 5 cut(s) 363, 472, 1123, 1231, 1466
BplI GAGNNNNNCTC 2 cut(s) 1342, 1374
BpmI CTGGAG 2 cut(s) 22, 1507
Bpu1102I GCTNAGC 1 cut(s) 1359
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 330
BsaAI YACGTR 2 cut(s) 364, 974
BsaHI GRCGYC 2 cut(s) 170, 573
BsaJI CCNNGG 5 cut(s) 699, 734, 821, 937, 1253
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 3 cut(s) 705, 1193, 1300
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 808, 1236
Bse3DI GCAATG 1 cut(s) 641
BseBI CCWGG 2 cut(s) 822, 1254
BseDI CCNNGG 5 cut(s) 699, 734, 821, 937, 1253
BseGI GGATG 2 cut(s) 99, 730
BseLI CCNNNNNNNGG 3 cut(s) 705, 1193, 1300
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 3 cut(s) 1014, 1265, 1373
BseNI ACTGG 2 cut(s) 808, 1236
BseRI GAGGAG 2 cut(s) 112, 1447
BseSI GKGCMC 1 cut(s) 910
BseXI GCAGC 3 cut(s) 577, 643, 1067
BsgI GTGCAG 1 cut(s) 1008
BshTI ACCGGT 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 910
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 4 cut(s) 230, 329, 1035, 1401
BslFI GGGAC 1 cut(s) 1042
BslI CCNNNNNNNGG 3 cut(s) 705, 1193, 1300
BsmAI GTCTC 4 cut(s) 91, 161, 231, 422
BsmBI CGTCTC 3 cut(s) 91, 161, 231
BsmFI GGGAC 1 cut(s) 1042
BsmI GAATGC 2 cut(s) 442, 481
BsoBI CYCGRG 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 910, 1355
Bsp143I GATC 9 cut(s) 47, 325, 394, 508, 676, 709, 1076, 1457, 1490
Bsp1720I GCTNAGC 1 cut(s) 1359
BspACI CCGC 3 cut(s) 754, 943, 1444
BspCNI CTCAG 3 cut(s) 1015, 1266, 1372
BspPI GGATC 5 cut(s) 42, 320, 717, 1465, 1485
BspT104I TTCGAA 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 641
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 2 cut(s) 808, 1236
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 5 cut(s) 699, 734, 821, 937, 1253
BssMI GATC 9 cut(s) 47, 325, 394, 508, 676, 709, 1076, 1457, 1490
BssNAI GTATAC 1 cut(s) 1154
BssNI GRCGYC 2 cut(s) 170, 573
BssSI CACGAG 1 cut(s) 1429
BssT1I CCWWGG 1 cut(s) 734
Bst1107I GTATAC 1 cut(s) 1154
Bst2BI CACGAG 1 cut(s) 1429
Bst2UI CCWGG 2 cut(s) 822, 1254
Bst4CI ACNGT 2 cut(s) 85, 247
Bst6I CTCTTC 3 cut(s) 83, 118, 686
BstACI GRCGYC 2 cut(s) 170, 573
BstAFI CTTAAG 1 cut(s) 947
BstBAI YACGTR 2 cut(s) 364, 974
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 684, 1070
BstDEI CTNAG 3 cut(s) 1023, 1274, 1359
BstENI CCTNNNNNAGG 1 cut(s) 1191
BstF5I GGATG 2 cut(s) 99, 730
BstHHI GCGC 1 cut(s) 1060
BstKTI GATC 9 cut(s) 50, 328, 397, 511, 679, 712, 1079, 1460, 1493
BstMAI GTCTC 4 cut(s) 91, 161, 231, 422
BstMBI GATC 9 cut(s) 47, 325, 394, 508, 676, 709, 1076, 1457, 1490
BstMWI GCNNNNNNNGC 2 cut(s) 949, 1258
BstNI CCWGG 2 cut(s) 822, 1254
BstNSI RCATGY 1 cut(s) 1072
BstSCI CCNGG 3 cut(s) 328, 820, 1252
BstSFI CTRYAG 2 cut(s) 649, 1500
BstSLI GKGCMC 1 cut(s) 910
BstV1I GCAGC 3 cut(s) 577, 643, 1067
BstX2I RGATCY 5 cut(s) 47, 325, 1076, 1457, 1490
BstYI RGATCY 5 cut(s) 47, 325, 1076, 1457, 1490
BstZ17I GTATAC 1 cut(s) 1154
BtsCI GGATG 2 cut(s) 99, 730
BtsIMutI CAGTG 5 cut(s) 672, 801, 1150, 1174, 1243
Cac8I GCNNGC 2 cut(s) 684, 1070
CaiI CAGNNNCTG 1 cut(s) 1149
CfoI GCGC 1 cut(s) 1060
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 4 cut(s) 157, 696, 738, 1370
CpoI CGGWCCG 1 cut(s) 157
CseI GACGC 1 cut(s) 581
CspAI ACCGGT 1 cut(s) 229
CspI CGGWCCG 1 cut(s) 157
CviAII CATG 2 cut(s) 1069, 1386
DdeI CTNAG 3 cut(s) 1023, 1274, 1359
DpnI GATC 9 cut(s) 49, 327, 396, 510, 678, 711, 1078, 1459, 1492
DpnII GATC 9 cut(s) 47, 325, 394, 508, 676, 709, 1076, 1457, 1490
Eam1104I CTCTTC 3 cut(s) 83, 118, 686
EarI CTCTTC 3 cut(s) 83, 118, 686
Eco130I CCWWGG 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 1355
Eco32I GATATC 3 cut(s) 335, 516, 877
Eco47I GGWCC 4 cut(s) 157, 696, 738, 1370
Eco57I CTGAAG 1 cut(s) 1101
Eco88I CYCGRG 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 1191
EcoRII CCWGG 2 cut(s) 820, 1252
EcoRV GATATC 3 cut(s) 335, 516, 877
EcoT14I CCWWGG 1 cut(s) 734
EcoT38I GRGCYC 1 cut(s) 1355
ErhI CCWWGG 1 cut(s) 734
Esp3I CGTCTC 3 cut(s) 91, 161, 231
FaeI CATG 2 cut(s) 1072, 1389
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FaqI GGGAC 1 cut(s) 1042
FatI CATG 2 cut(s) 1068, 1385
FauI CCCGC 1 cut(s) 1437
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 1153
Fnu4HI GCNGC 4 cut(s) 566, 632, 944, 1056
FokI GGATG 2 cut(s) 86, 717
FriOI GRGCYC 1 cut(s) 1355
Fsp4HI GCNGC 4 cut(s) 566, 632, 944, 1056
FspBI CTAG 1 cut(s) 1461
GlaI GCGC 1 cut(s) 1059
GluI GCNGC 4 cut(s) 566, 632, 944, 1056
GsuI CTGGAG 2 cut(s) 22, 1507
HapII CCGG 4 cut(s) 230, 329, 1035, 1401
HgaI GACGC 1 cut(s) 581
HhaI GCGC 1 cut(s) 1060
Hin1I GRCGYC 2 cut(s) 170, 573
Hin1II CATG 2 cut(s) 1072, 1389
Hin6I GCGC 1 cut(s) 1058
HinP1I GCGC 1 cut(s) 1058
HindIII AAGCTT 2 cut(s) 657, 1421
HinfI GANTC 3 cut(s) 307, 524, 797
HpaII CCGG 4 cut(s) 230, 329, 1035, 1401
HphI GGTGA 3 cut(s) 73, 1115, 1423
Hpy166II GTNNAC 5 cut(s) 361, 387, 908, 1154, 1267
Hpy188III TCNNGA 8 cut(s) 6, 39, 126, 298, 521, 550, 1373, 1450
Hpy8I GTNNAC 5 cut(s) 361, 387, 908, 1154, 1267
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 6 cut(s) 184, 699, 751, 1187, 1207, 1300
HpyCH4III ACNGT 2 cut(s) 85, 247
HpyCH4IV ACGT 4 cut(s) 170, 363, 973, 1063
HpyCH4V TGCA 8 cut(s) 463, 639, 908, 959, 989, 1244, 1309, 1473
HpyF10VI GCNNNNNNNGC 2 cut(s) 949, 1258
HpyF3I CTNAG 3 cut(s) 1023, 1274, 1359
HpySE526I ACGT 4 cut(s) 170, 363, 973, 1063
Hsp92I GRCGYC 2 cut(s) 170, 573
Hsp92II CATG 2 cut(s) 1072, 1389
HspAI GCGC 1 cut(s) 1058
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 9 cut(s) 47, 325, 394, 508, 676, 709, 1076, 1457, 1490
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 3 cut(s) 577, 643, 1067
LweI GCATC 5 cut(s) 363, 472, 1123, 1231, 1466
MaeI CTAG 1 cut(s) 1461
MaeII ACGT 4 cut(s) 170, 363, 973, 1063
MaeIII GTNAC 6 cut(s) 178, 225, 670, 1103, 1169, 1437
MalI GATC 9 cut(s) 49, 327, 396, 510, 678, 711, 1078, 1459, 1492
MboI GATC 9 cut(s) 47, 325, 394, 508, 676, 709, 1076, 1457, 1490
MfeI CAATTG 1 cut(s) 808
MflI RGATCY 5 cut(s) 47, 325, 1076, 1457, 1490
MhlI GDGCHC 2 cut(s) 910, 1355
MluCI AATT 9 cut(s) 344, 758, 808, 849, 992, 1017, 1049, 1181, 1510
MlyI GAGTC 1 cut(s) 791
MmeI TCCRAC 4 cut(s) 135, 603, 1158, 1518
MseI TTAA 5 cut(s) 200, 354, 948, 995, 1534
MspA1I CMGCKG 1 cut(s) 1444
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 4 cut(s) 230, 329, 1035, 1401
MspR9I CCNGG 3 cut(s) 330, 822, 1254
MunI CAATTG 1 cut(s) 808
Mva1269I GAATGC 2 cut(s) 442, 481
MvaI CCWGG 2 cut(s) 822, 1254
MwoI GCNNNNNNNGC 2 cut(s) 949, 1258
NciI CCSGG 1 cut(s) 330
NdeII GATC 9 cut(s) 47, 325, 394, 508, 676, 709, 1076, 1457, 1490
NlaIII CATG 2 cut(s) 1072, 1389
NmuCI GTSAC 4 cut(s) 670, 1103, 1169, 1437
NspI RCATGY 1 cut(s) 1072
NspV TTCGAA 1 cut(s) 434
PaeI GCATGC 1 cut(s) 1072
PcsI WCGNNNNNNNCGW 1 cut(s) 1069
PctI GAATGC 2 cut(s) 442, 481
PfeI GAWTC 2 cut(s) 307, 524
PfoI TCCNGGA 1 cut(s) 328
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 4 cut(s) 567, 633, 945, 1057
PleI GAGTC 1 cut(s) 791
PpsI GAGTC 1 cut(s) 791
Ppu21I YACGTR 2 cut(s) 364, 974
Psp6I CCWGG 2 cut(s) 820, 1252
PspGI CCWGG 2 cut(s) 820, 1252
PspPI GGNCC 4 cut(s) 157, 696, 738, 1370
PstNI CAGNNNCTG 1 cut(s) 1149
PsuI RGATCY 5 cut(s) 47, 325, 1076, 1457, 1490
Rsr2I CGGWCCG 1 cut(s) 157
RsrII CGGWCCG 1 cut(s) 157
SaqAI TTAA 5 cut(s) 200, 354, 948, 995, 1534
SatI GCNGC 4 cut(s) 566, 632, 944, 1056
Sau3AI GATC 9 cut(s) 47, 325, 394, 508, 676, 709, 1076, 1457, 1490
Sau96I GGNCC 4 cut(s) 157, 696, 738, 1370
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 3 cut(s) 330, 822, 1254
SduI GDGCHC 2 cut(s) 910, 1355
SfaNI GCATC 5 cut(s) 363, 472, 1123, 1231, 1466
SfcI CTRYAG 2 cut(s) 649, 1500
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 4 cut(s) 157, 696, 738, 1370
SmlI CTYRAG 2 cut(s) 188, 947
SmoI CTYRAG 2 cut(s) 188, 947
SphI GCATGC 1 cut(s) 1072
Sse9I AATT 9 cut(s) 344, 758, 808, 849, 992, 1017, 1049, 1181, 1510
SsiI CCGC 3 cut(s) 754, 943, 1444
SspMI CTAG 1 cut(s) 1461
StyD4I CCNGG 3 cut(s) 328, 820, 1252
StyI CCWWGG 1 cut(s) 734
TaaI ACNGT 2 cut(s) 85, 247
TaiI ACGT 4 cut(s) 173, 366, 976, 1066
TaqI TCGA 6 cut(s) 282, 297, 393, 434, 474, 1349
TaqII GACCGA 1 cut(s) 174
TasI AATT 9 cut(s) 344, 758, 808, 849, 992, 1017, 1049, 1181, 1510
TauI GCSGC 1 cut(s) 946
TfiI GAWTC 2 cut(s) 307, 524
Tru1I TTAA 5 cut(s) 200, 354, 948, 995, 1534
Tru9I TTAA 5 cut(s) 200, 354, 948, 995, 1534
TscAI CASTG 5 cut(s) 679, 808, 1150, 1174, 1243
TseFI GTSAC 4 cut(s) 670, 1103, 1169, 1437
TseI GCWGC 3 cut(s) 565, 631, 1055
Tsp45I GTSAC 4 cut(s) 670, 1103, 1169, 1437
TspDTI ATGAA 2 cut(s) 716, 822
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 5 cut(s) 679, 808, 1150, 1174, 1243
Vha464I CTTAAG 1 cut(s) 947
VneI GTGCAC 1 cut(s) 906
VpaK11BI GGWCC 4 cut(s) 157, 696, 738, 1370
XagI CCTNNNNNAGG 1 cut(s) 1191
XapI RAATTY 3 cut(s) 344, 758, 1181
XceI RCATGY 1 cut(s) 1072
XmiI GTMKAC 1 cut(s) 1153
XspI CTAG 1 cut(s) 1461
ZraI GACGTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.