RLG00000026052

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010247
Physical Location & Seq
Forward (+)
251339 .. 254911
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026052

Sequence Viewer

Length: 1521 bp
ATGATGAGAATGGGTGGAAAGCAAATGACAAGATCCAAATCCCCACTTCTAGTATTGACCCTGGTTCTCGTGGCCCTCTCCCTCCTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTCTTTCCGCAGCGACGGCCCCGCCCCATTCTCCGACGGCCCACTCCACCGGAACCCGATTTACAAACCCGAAACCTCCTTCGTCGCCTCCCTCGAGCGCTTCCTCCTCTCTTTCCACAACTCCCTTCCTTCCGCCGCCCAGATGACTCACGATCCTAAACACCTCGACGATTTGCTCTTCAACACCGACACTAATCGACTCTATGCAGATCCGTACTACCCACTCACCATGCCTATTAGGGTTTACGTCTACGACATGCCCCCCAAGTTCACCTACGATCTCCTCCGCCTCTTCATCACCTCCTACAAGGACACCTCCAATCTCACCTCCAATGGAAGCCCCGTCCACCGCCTCATCGAACAGCATTCAATTGATTACTGGCTGTGGGCGGATTTGATAGCTCCGGAATCAGAGAGGCTGCTGAAAAGCGTAGTCAGAGTGCTTCGGCAGGAGGAGGCAGACCTCTTCTACGTTCCCTTCTTCACCACCATTAGCTTCTTCTTGATGGAGAAGCAGCAATGCAAATCGCTTTACAGGGAAGCTCTCAAGTGGATCACGGATCAACCTGCCTGGAACCGATCCGGAGGAAGGGATCATATTATTCCTGTTCATCATCCTTGGTCATTTAAGTCTGTTCGCCGATCTGTGAAAAATGCAATTTGGCTGCTTCCTGATATGGACTCTACAGGCAACTGGTACAAGCCAGGACAAGTTTATTTGGAGAAAGATCTCATTCTTCCTTATGTTGCCAATGTTGATCTTTGCGATGCCAGATGTGTATCTGAGACTCAATCCAGGAGAACAACTTTGCTGTTTTTTCGTGGGCGGCTTAAAAGAAATGCGGGAGGGAAGATACGTGCAAAACTTGTAGCAGAACTGAGTGGGGCTGAGGGTGTATCTATAGAGGAGGGAACAGCTGGAGAAGGAGGAAAGGCAGCAGCTCAGAATGGAATGCGCAAGTCTATTTTTTGCTTAAATCCAGCTGGTGATACTCCATCATCCGCTAGATTATTTGATGCCATTGTTAGTGGTTGCATACCGGTCATAGTTAGTGATGAGTTGGAGCTTCCTTTTGAAGGAATACTAGATTATAGAAAGATTGCTTTATTTGTTTCCTCCAGTGATGCTGTACAACCAGGTTGGCTTTTAACATATCTTAGAAATATTAGCCCTGCACAAATTGAAGAAATGCGCCGGAATCTTGCTAAGTACTCAAGGCATTTCATATATTCCAGTCCTGCTCAACCCTTGGGTCCGGAAGACTTGGTTTGGAGAATGATGGCTGGTAAGTTGGTGAATATCAAGCTTCACACTCGGAGATCTCAGCGTGTGGTGAAAGAATCGAGAAGCATCTGCACCTGCGATTGCAGACGCCCCAACTCCACAACCTCAGGTTACTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

507

Amino Acids

57.74

Weight (kDa)

9.21

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 116 - 423 5.6e-79 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1481
Acc16I TGCGCA 1 cut(s) 1070
Acc36I ACCTGC 2 cut(s) 688, 1481
AccI GTMKAC 1 cut(s) 363
AccIII TCCGGA 3 cut(s) 517, 695, 1369
AclWI GGATC 7 cut(s) 27, 260, 317, 674, 681, 687, 714
AcyI GRCGYC 1 cut(s) 1486
AfaI GTAC 4 cut(s) 329, 812, 1245, 1325
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 702, 1190
AgeI ACCGGT 1 cut(s) 1153
AgsI TTSAA 4 cut(s) 295, 483, 1190, 1298
AjnI CCWGG 5 cut(s) 60, 683, 817, 908, 1249
AluBI AGCT 8 cut(s) 515, 609, 656, 1031, 1055, 1097, 1180, 1420
AluI AGCT 8 cut(s) 515, 609, 656, 1031, 1055, 1097, 1180, 1420
Alw26I GTCTC 1 cut(s) 893
AlwI GGATC 7 cut(s) 27, 260, 317, 674, 681, 687, 714
Ama87I CYCGRG 1 cut(s) 206
Aor13HI TCCGGA 3 cut(s) 517, 695, 1369
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 3 cut(s) 72, 130, 151
ApeKI GCWGC 6 cut(s) 123, 532, 628, 778, 1049, 1052
AsiGI ACCGGT 1 cut(s) 1153
AspLEI GCGC 3 cut(s) 213, 1071, 1308
AspS9I GGNCC 4 cut(s) 73, 131, 152, 1367
AsuHPI GGTGA 8 cut(s) 331, 376, 403, 430, 589, 1112, 1420, 1459
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 1367
AxyI CCTNAGG 1 cut(s) 1504
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 1380
BbvCI CCTCAGC 1 cut(s) 1002
BbvI GCAGC 6 cut(s) 135, 519, 640, 765, 1061, 1064
BccI CCATC 3 cut(s) 613, 1117, 1387
BceAI ACGGC 2 cut(s) 145, 166
BciT130I CCWGG 5 cut(s) 62, 685, 819, 910, 1251
BcoDI GTCTC 1 cut(s) 893
BfaI CTAG 3 cut(s) 50, 1119, 1199
BfmI CTRYAG 2 cut(s) 798, 1014
BfoI RGCGCY 1 cut(s) 214
BfuAI ACCTGC 2 cut(s) 688, 1481
BglII AGATCT 2 cut(s) 841, 1433
BisI GCNGC 8 cut(s) 124, 249, 533, 629, 779, 941, 1050, 1053
BlsI GCNGC 8 cut(s) 125, 250, 534, 630, 780, 942, 1051, 1054
BmcAI AGTACT 1 cut(s) 1325
Bme1390I CCNGG 5 cut(s) 62, 685, 819, 910, 1251
Bme18I GGWCC 1 cut(s) 1367
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 4 cut(s) 73, 131, 152, 1367
BmiI GGNNCC 4 cut(s) 133, 167, 689, 1368
BmrFI CCNGG 5 cut(s) 62, 685, 819, 910, 1251
BmsI GCATC 4 cut(s) 871, 1120, 1228, 1473
BpiI GAAGAC 1 cut(s) 1380
BpmI CTGGAG 2 cut(s) 1053, 1216
Bpu10I CCTNAGC 1 cut(s) 1002
BpuEI CTTGAG 2 cut(s) 644, 1312
BsaAI YACGTR 1 cut(s) 971
BsaBI GATNNNNATC 2 cut(s) 37, 892
BsaHI GRCGYC 1 cut(s) 1486
BsaJI CCNNGG 3 cut(s) 60, 731, 1362
BsaWI WCCGGW 5 cut(s) 162, 517, 695, 1153, 1369
Bsc4I CCNNNNNNNGG 2 cut(s) 702, 1190
Bse118I RCCGGY 1 cut(s) 1153
Bse1I ACTGG 4 cut(s) 497, 812, 1233, 1347
Bse21I CCTNAGG 1 cut(s) 1504
Bse3DI GCAATG 1 cut(s) 638
Bse8I GATNNNNATC 2 cut(s) 37, 892
BseAI TCCGGA 3 cut(s) 517, 695, 1369
BseBI CCWGG 5 cut(s) 62, 685, 819, 910, 1251
BseDI CCNNGG 3 cut(s) 60, 731, 1362
BseGI GGATG 2 cut(s) 727, 1112
BseJI GATNNNNATC 2 cut(s) 37, 892
BseLI CCNNNNNNNGG 2 cut(s) 702, 1190
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 6 cut(s) 888, 983, 993, 1070, 1451, 1518
BseNI ACTGG 4 cut(s) 497, 812, 1233, 1347
BseRI GAGGAG 5 cut(s) 74, 209, 386, 581, 1034
BseXI GCAGC 6 cut(s) 135, 519, 640, 765, 1061, 1064
BsgI GTGCAG 2 cut(s) 1272, 1453
BshFI GGCC 3 cut(s) 74, 132, 153
BshTI ACCGGT 1 cut(s) 1153
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 6 cut(s) 163, 518, 696, 1154, 1309, 1370
BslI CCNNNNNNNGG 2 cut(s) 702, 1190
BsmAI GTCTC 1 cut(s) 893
BsmI GAATGC 2 cut(s) 478, 1071
BsnI GGCC 3 cut(s) 74, 132, 153
BsoBI CYCGRG 1 cut(s) 206
Bsp13I TCCGGA 3 cut(s) 517, 695, 1369
Bsp1407I TGTACA 1 cut(s) 1243
BspANI GGCC 3 cut(s) 74, 132, 153
BspCNI CTCAG 6 cut(s) 889, 984, 994, 1069, 1450, 1517
BspEI TCCGGA 3 cut(s) 517, 695, 1369
BspLI GGNNCC 4 cut(s) 133, 167, 689, 1368
BspMI ACCTGC 2 cut(s) 688, 1481
BspPI GGATC 7 cut(s) 27, 260, 317, 674, 681, 687, 714
BspQI GCTCTTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 638
BsrFI RCCGGY 1 cut(s) 1153
BsrGI TGTACA 1 cut(s) 1243
BsrI ACTGG 4 cut(s) 497, 812, 1233, 1347
BssAI RCCGGY 1 cut(s) 1153
BssECI CCNNGG 3 cut(s) 60, 731, 1362
BssNI GRCGYC 1 cut(s) 1486
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 2 cut(s) 731, 1362
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 5 cut(s) 62, 685, 819, 910, 1251
Bst6I CTCTTC 5 cut(s) 92, 116, 296, 410, 584
BstACI GRCGYC 1 cut(s) 1486
BstAUI TGTACA 1 cut(s) 1243
BstBAI YACGTR 1 cut(s) 971
BstDEI CTNAG 8 cut(s) 897, 992, 1002, 1056, 1271, 1320, 1437, 1504
BstENI CCTNNNNNAGG 1 cut(s) 1188
BstF5I GGATG 2 cut(s) 727, 1112
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 3 cut(s) 213, 1071, 1308
BstMAI GTCTC 1 cut(s) 893
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 5 cut(s) 62, 685, 819, 910, 1251
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 5 cut(s) 60, 683, 817, 908, 1249
BstSFI CTRYAG 2 cut(s) 798, 1014
BstV1I GCAGC 6 cut(s) 135, 519, 640, 765, 1061, 1064
BstV2I GAAGAC 1 cut(s) 1380
BstX2I RGATCY 4 cut(s) 32, 322, 841, 1433
BstYI RGATCY 4 cut(s) 32, 322, 841, 1433
Bsu36I CCTNAGG 1 cut(s) 1504
BsuRI GGCC 3 cut(s) 74, 132, 153
BtgZI GCGATG 1 cut(s) 894
BtsCI GGATG 2 cut(s) 727, 1112
BtsIMutI CAGTG 1 cut(s) 1240
BveI ACCTGC 2 cut(s) 688, 1481
CfoI GCGC 3 cut(s) 213, 1071, 1308
Cfr10I RCCGGY 1 cut(s) 1153
Cfr13I GGNCC 4 cut(s) 73, 131, 152, 1367
CseI GACGC 1 cut(s) 1494
CsiI ACCWGGT 1 cut(s) 1249
Csp6I GTAC 4 cut(s) 328, 811, 1244, 1324
CspAI ACCGGT 1 cut(s) 1153
CviAII CATG 2 cut(s) 343, 370
CviQI GTAC 4 cut(s) 328, 811, 1244, 1324
DdeI CTNAG 8 cut(s) 897, 992, 1002, 1056, 1271, 1320, 1437, 1504
Eam1104I CTCTTC 5 cut(s) 92, 116, 296, 410, 584
EarI CTCTTC 5 cut(s) 92, 116, 296, 410, 584
EciI GGCGGA 3 cut(s) 235, 389, 518
Eco130I CCWWGG 2 cut(s) 731, 1362
Eco47I GGWCC 1 cut(s) 1367
Eco47III AGCGCT 1 cut(s) 212
Eco81I CCTNAGG 1 cut(s) 1504
Eco88I CYCGRG 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 1188
EcoRII CCWGG 5 cut(s) 60, 683, 817, 908, 1249
EcoT14I CCWWGG 2 cut(s) 731, 1362
ErhI CCWWGG 2 cut(s) 731, 1362
FaeI CATG 2 cut(s) 346, 373
FatI CATG 2 cut(s) 342, 369
FauI CCCGC 2 cut(s) 142, 949
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 8 cut(s) 124, 249, 533, 629, 779, 941, 1050, 1053
FokI GGATG 2 cut(s) 714, 1099
Fsp4HI GCNGC 8 cut(s) 124, 249, 533, 629, 779, 941, 1050, 1053
FspBI CTAG 3 cut(s) 50, 1119, 1199
FspI TGCGCA 1 cut(s) 1070
GlaI GCGC 3 cut(s) 212, 1070, 1307
GluI GCNGC 8 cut(s) 124, 249, 533, 629, 779, 941, 1050, 1053
GsuI CTGGAG 2 cut(s) 1053, 1216
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 3 cut(s) 74, 132, 153
HapII CCGG 6 cut(s) 163, 518, 696, 1154, 1309, 1370
HgaI GACGC 1 cut(s) 1494
HhaI GCGC 3 cut(s) 213, 1071, 1308
Hin1I GRCGYC 1 cut(s) 1486
Hin1II CATG 2 cut(s) 346, 373
Hin6I GCGC 3 cut(s) 211, 1069, 1306
HinP1I GCGC 3 cut(s) 211, 1069, 1306
HindIII AAGCTT 1 cut(s) 1418
HinfI GANTC 7 cut(s) 259, 312, 521, 794, 901, 1312, 1454
HpaII CCGG 6 cut(s) 163, 518, 696, 1154, 1309, 1370
HphI GGTGA 8 cut(s) 331, 376, 403, 430, 589, 1112, 1420, 1459
Hpy166II GTNNAC 4 cut(s) 358, 364, 384, 460
Hpy188I TCNGA 6 cut(s) 148, 526, 551, 898, 1059, 1431
Hpy188III TCNNGA 7 cut(s) 263, 518, 616, 696, 785, 1370, 1458
Hpy8I GTNNAC 4 cut(s) 358, 364, 384, 460
Hpy99I CGWCG 4 cut(s) 131, 152, 200, 284
HpyAV CCTTC 7 cut(s) 202, 248, 252, 601, 696, 1031, 1184
HpyCH4IV ACGT 3 cut(s) 360, 585, 970
HpyCH4V TGCA 8 cut(s) 320, 636, 770, 974, 1149, 1289, 1470, 1482
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 8 cut(s) 897, 992, 1002, 1056, 1271, 1320, 1437, 1504
HpySE526I ACGT 3 cut(s) 360, 585, 970
Hsp92I GRCGYC 1 cut(s) 1486
Hsp92II CATG 2 cut(s) 346, 373
HspAI GCGC 3 cut(s) 211, 1069, 1306
Kpn2I TCCGGA 3 cut(s) 517, 695, 1369
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 2 cut(s) 520, 1177
Lsp1109I GCAGC 6 cut(s) 135, 519, 640, 765, 1061, 1064
LweI GCATC 4 cut(s) 871, 1120, 1228, 1473
MabI ACCWGGT 1 cut(s) 1249
MaeI CTAG 3 cut(s) 50, 1119, 1199
MaeII ACGT 3 cut(s) 360, 585, 970
MaeIII GTNAC 1 cut(s) 1508
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 4 cut(s) 32, 322, 841, 1433
MluCI AATT 3 cut(s) 483, 771, 1293
MlyI GAGTC 4 cut(s) 253, 306, 788, 895
MmeI TCCRAC 2 cut(s) 171, 1155
MroI TCCGGA 3 cut(s) 517, 695, 1369
MseI TTAA 4 cut(s) 741, 945, 1088, 1262
MspA1I CMGCKG 2 cut(s) 1031, 1097
MspI CCGG 6 cut(s) 163, 518, 696, 1154, 1309, 1370
MspR9I CCNGG 5 cut(s) 62, 685, 819, 910, 1251
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 2 cut(s) 478, 1071
MvaI CCWGG 5 cut(s) 62, 685, 819, 910, 1251
MwoI GCNNNNNNNGC 1 cut(s) 129
NlaIII CATG 2 cut(s) 346, 373
NlaIV GGNNCC 4 cut(s) 133, 167, 689, 1368
NsbI TGCGCA 1 cut(s) 1070
NspI RCATGY 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 206
PaqCI CACCTGC 1 cut(s) 1481
PciSI GCTCTTC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 2 cut(s) 478, 1071
PfeI GAWTC 3 cut(s) 521, 1312, 1454
PfoI TCCNGGA 1 cut(s) 908
PinAI ACCGGT 1 cut(s) 1153
PkrI GCNGC 8 cut(s) 125, 250, 534, 630, 780, 942, 1051, 1054
PleI GAGTC 4 cut(s) 253, 306, 788, 895
PpsI GAGTC 4 cut(s) 253, 306, 788, 895
Ppu21I YACGTR 1 cut(s) 971
Psp6I CCWGG 5 cut(s) 60, 683, 817, 908, 1249
PspGI CCWGG 5 cut(s) 60, 683, 817, 908, 1249
PspN4I GGNNCC 4 cut(s) 133, 167, 689, 1368
PspPI GGNCC 4 cut(s) 73, 131, 152, 1367
PspXI VCTCGAGB 1 cut(s) 206
PsrI GAACNNNNNNTAC 2 cut(s) 158, 190
PsuI RGATCY 4 cut(s) 32, 322, 841, 1433
PvuII CAGCTG 2 cut(s) 1031, 1097
RsaI GTAC 4 cut(s) 329, 812, 1245, 1325
RsaNI GTAC 4 cut(s) 328, 811, 1244, 1324
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 4 cut(s) 741, 945, 1088, 1262
SatI GCNGC 8 cut(s) 124, 249, 533, 629, 779, 941, 1050, 1053
Sau96I GGNCC 4 cut(s) 73, 131, 152, 1367
ScaI AGTACT 1 cut(s) 1325
SchI GAGTC 4 cut(s) 253, 306, 788, 895
ScrFI CCNGG 5 cut(s) 62, 685, 819, 910, 1251
SexAI ACCWGGT 1 cut(s) 1249
SfaNI GCATC 4 cut(s) 871, 1120, 1228, 1473
SfcI CTRYAG 2 cut(s) 798, 1014
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 1 cut(s) 1367
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 3 cut(s) 206, 659, 1327
SmoI CTYRAG 3 cut(s) 206, 659, 1327
Sse9I AATT 3 cut(s) 483, 771, 1293
SspI AATATT 1 cut(s) 1279
SspMI CTAG 3 cut(s) 50, 1119, 1199
StyD4I CCNGG 5 cut(s) 60, 683, 817, 908, 1249
StyI CCWWGG 2 cut(s) 731, 1362
TaiI ACGT 3 cut(s) 363, 588, 973
TaqI TCGA 5 cut(s) 207, 279, 310, 471, 1457
TasI AATT 3 cut(s) 483, 771, 1293
TatI WGTACW 2 cut(s) 1243, 1323
TauI GCSGC 2 cut(s) 251, 943
TfiI GAWTC 3 cut(s) 521, 1312, 1454
Tru1I TTAA 4 cut(s) 741, 945, 1088, 1262
Tru9I TTAA 4 cut(s) 741, 945, 1088, 1262
TscAI CASTG 1 cut(s) 1240
TseI GCWGC 6 cut(s) 123, 532, 628, 778, 1049, 1052
TspDTI ATGAA 3 cut(s) 397, 713, 1327
TspGWI ACGGA 2 cut(s) 315, 686
TspRI CASTG 1 cut(s) 1240
VpaK11BI GGWCC 1 cut(s) 1367
XagI CCTNNNNNAGG 1 cut(s) 1188
XceI RCATGY 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 3 cut(s) 50, 1119, 1199
ZrmI AGTACT 1 cut(s) 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.