Rh1BG429600

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010247
Physical Location & Seq
Reverse (-)
54638478 .. 54641257
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG429600.1

Sequence Viewer

Length: 1500 bp
ATGATGAGAATGGGTGGAAAGCAAATGACAAGATCCAAATCCCCACTTCTAGTATTGACCCTGGTTCTCGCGGCCCTCTCCCTCCTCTTCTTCTTCCTCTTCTCTTTCCGCAGCGACCCGTTCTCCGATGGCCCACTCCACCCGAACCCGATTTACAAACCCGAAACCTCCTTCGTCGCCTCCCTCGAGCGCTTCCTCCTCGCTTTTCACAACTCCCCTCCTTCCGCCCCCCAGAGGACTCACGATCCTAAGCACCTCGACGATTTGCTCTTCAACACCGACACTCAGCGACTCTACGCAGATCCGTACTACCCACTCACCATGCCTGTTAGGGTTTACGTCTACGACATGCCCCCCAAGTTCACCTACGATCTCCTCCGCCTCTTCATCACCTCCTACAAGGACACCTCCAATCTCACCTCCAATGGAAGCCCCGTCCACCGCCTCATCGAACAGCATTCGGTTGATTACTGGCTGTGGGCGGATTTGATAGCTCCGGAGTCAGAGAGGCTGCTGAAGAGCGTAGTGAGAGTGCATCGGCAGGAGGAGGCAGACCTCTTCTACGTTCCCTTCTTCACCACCATTAGCTTCTTCTTGATGGAGAAGCAGCAATGCAAATCGCTTTACAGGGAAGCTCTCAAGTGGATCACGGATCAGCCTGCCTGGAACCGATCCGGAGGAAGGGATCATATTATTCCAGTTCATCATCCTTGGTCGTTTAAGTCTGTTCGCCGATCTGTGAAAAATGCAATTTGGCTGCTTCCTGATATGGACTCTACAGGCAACTGGTACAAGCCAGGACAAGTTTATTTGGAGAAAGATCTCATTCTTCCTTATGTTGCCAATGTTGATCTTTGTGATGCCAGATGTGTATCTGAGACTCAATCCAGGAGAACAACTCTGCTCTTTTTTCGTGGGCGGCTTAAAAGAAATGCGGGAGGGAAGATACGTGCAAAACTTGTAGCAGAACTTAGTGGGGCTGAGGGTGTATCTATAGAGGAGGGGACAGCTGGTGAAGGAGGAAAGGCAGCAGCTCAGAATGGAATGCGCAAGTCTATATTTTGCTTAAACCCAGCTGGTGATACTCCATCATCCGCTAGATTATTTGATGCCATTGTTAGTGGTTGCATACCGGTCATAGTTAGTGATGAGTTGGAGCTTCCTTTTGAAGGAATACTAGATTATAGAAAGATTGCTTTATTTGTTTCTTCCAGTGATGCTGTACAACCAGGTTGGCTTTTAACATATCTTAGAAATATTAGCCCTGCTCAAATTGAAGAAATGCGCCAGAATCTTGCTAAGTACTCAAGGCATTTCATATATTCCAGTCCTGCTCAACCCTTGGGTCCGGAAGACTTGGTTTGGAGAATGATTGCTGGTAAGTTGGTGAATATCAAGCTTCACACTCGACGATCTCAACGTGTGGTGAAAGAGTCGAGAAGCATCTGCACCTGCGATTGCAGACGCCCCAATTCCACAACCCCAGGTCACTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

499

Amino Acids

56.81

Weight (kDa)

9.16

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 109 - 416 3.8e-79 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1460
Acc16I TGCGCA 1 cut(s) 1049
Acc36I ACCTGC 1 cut(s) 1460
AccI GTMKAC 1 cut(s) 342
AccII CGCG 1 cut(s) 71
AccIII TCCGGA 3 cut(s) 496, 674, 1348
AciI CCGC 9 cut(s) 71, 109, 225, 379, 442, 482, 919, 935, 1095
AclWI GGATC 7 cut(s) 27, 239, 296, 653, 660, 666, 693
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 1465
AfaI GTAC 4 cut(s) 308, 791, 1224, 1304
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 3 cut(s) 234, 681, 1169
AflIII ACRYGT 1 cut(s) 1420
AgeI ACCGGT 1 cut(s) 1132
AgsI TTSAA 3 cut(s) 274, 1169, 1277
AjnI CCWGG 6 cut(s) 60, 662, 796, 887, 1228, 1483
AluBI AGCT 8 cut(s) 494, 588, 635, 1010, 1034, 1076, 1159, 1399
AluI AGCT 8 cut(s) 494, 588, 635, 1010, 1034, 1076, 1159, 1399
Alw26I GTCTC 1 cut(s) 872
AlwI GGATC 7 cut(s) 27, 239, 296, 653, 660, 666, 693
Ama87I CYCGRG 1 cut(s) 185
Aor13HI TCCGGA 3 cut(s) 496, 674, 1348
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 72, 130
ApeKI GCWGC 6 cut(s) 111, 511, 607, 757, 1028, 1031
AsiGI ACCGGT 1 cut(s) 1132
AspLEI GCGC 3 cut(s) 192, 1050, 1287
AspS9I GGNCC 3 cut(s) 73, 131, 1346
AsuHPI GGTGA 9 cut(s) 310, 355, 382, 409, 568, 1025, 1091, 1399, 1438
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 1346
BbsI GAAGAC 1 cut(s) 1359
BbvCI CCTCAGC 1 cut(s) 981
BbvI GCAGC 6 cut(s) 123, 498, 619, 744, 1040, 1043
BccI CCATC 3 cut(s) 122, 592, 1096
BciT130I CCWGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
BcoDI GTCTC 1 cut(s) 872
BfaI CTAG 3 cut(s) 50, 1098, 1178
BfmI CTRYAG 2 cut(s) 777, 993
BfoI RGCGCY 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 1460
BglII AGATCT 1 cut(s) 820
BisI GCNGC 8 cut(s) 72, 112, 512, 608, 758, 920, 1029, 1032
BlsI GCNGC 8 cut(s) 73, 113, 513, 609, 759, 921, 1030, 1033
BmcAI AGTACT 1 cut(s) 1304
Bme1390I CCNGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
Bme18I GGWCC 1 cut(s) 1346
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 73, 131, 1346
BmiI GGNNCC 2 cut(s) 668, 1347
BmrFI CCNGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
BmsI GCATC 5 cut(s) 544, 850, 1099, 1207, 1452
BpiI GAAGAC 1 cut(s) 1359
BplI GAGNNNNNCTC 2 cut(s) 883, 915
Bpu10I CCTNAGC 2 cut(s) 249, 981
BpuEI CTTGAG 2 cut(s) 623, 1291
BsaAI YACGTR 1 cut(s) 950
BsaBI GATNNNNATC 2 cut(s) 37, 871
BsaHI GRCGYC 1 cut(s) 1465
BsaJI CCNNGG 4 cut(s) 60, 710, 1341, 1483
BsaWI WCCGGW 4 cut(s) 496, 674, 1132, 1348
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 681, 1169
Bse118I RCCGGY 1 cut(s) 1132
Bse1I ACTGG 5 cut(s) 476, 698, 791, 1212, 1326
Bse3DI GCAATG 1 cut(s) 617
Bse8I GATNNNNATC 2 cut(s) 37, 871
BseAI TCCGGA 3 cut(s) 496, 674, 1348
BseBI CCWGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
BseDI CCNNGG 4 cut(s) 60, 710, 1341, 1483
BseGI GGATG 2 cut(s) 706, 1091
BseJI GATNNNNATC 2 cut(s) 37, 871
BseLI CCNNNNNNNGG 3 cut(s) 234, 681, 1169
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 4 cut(s) 299, 867, 972, 1049
BseNI ACTGG 5 cut(s) 476, 698, 791, 1212, 1326
BseRI GAGGAG 5 cut(s) 74, 188, 365, 560, 1013
BseXI GCAGC 6 cut(s) 123, 498, 619, 744, 1040, 1043
BseYI CCCAGC 1 cut(s) 1072
BsgI GTGCAG 1 cut(s) 1432
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 74, 132
BshTI ACCGGT 1 cut(s) 1132
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 4 cut(s) 497, 675, 1133, 1349
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 3 cut(s) 234, 681, 1169
BsmAI GTCTC 1 cut(s) 872
BsmFI GGGAC 1 cut(s) 1018
BsmI GAATGC 2 cut(s) 457, 1050
BsnI GGCC 2 cut(s) 74, 132
BsoBI CYCGRG 1 cut(s) 185
Bsp13I TCCGGA 3 cut(s) 496, 674, 1348
Bsp1407I TGTACA 1 cut(s) 1222
BspACI CCGC 9 cut(s) 71, 109, 225, 379, 442, 482, 919, 935, 1095
BspANI GGCC 2 cut(s) 74, 132
BspCNI CTCAG 4 cut(s) 298, 868, 973, 1048
BspEI TCCGGA 3 cut(s) 496, 674, 1348
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 668, 1347
BspMI ACCTGC 1 cut(s) 1460
BspPI GGATC 7 cut(s) 27, 239, 296, 653, 660, 666, 693
BspQI GCTCTTC 2 cut(s) 275, 512
BsrDI GCAATG 1 cut(s) 617
BsrFI RCCGGY 1 cut(s) 1132
BsrGI TGTACA 1 cut(s) 1222
BsrI ACTGG 5 cut(s) 476, 698, 791, 1212, 1326
BssAI RCCGGY 1 cut(s) 1132
BssECI CCNNGG 4 cut(s) 60, 710, 1341, 1483
BssNI GRCGYC 1 cut(s) 1465
BssT1I CCWWGG 2 cut(s) 710, 1341
Bst2UI CCWGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
Bst6I CTCTTC 6 cut(s) 92, 104, 275, 389, 512, 563
BstACI GRCGYC 1 cut(s) 1465
BstAUI TGTACA 1 cut(s) 1222
BstBAI YACGTR 1 cut(s) 950
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 8 cut(s) 249, 285, 876, 971, 981, 1035, 1250, 1299
BstENI CCTNNNNNAGG 1 cut(s) 1167
BstF5I GGATG 2 cut(s) 706, 1091
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 3 cut(s) 192, 1050, 1287
BstMAI GTCTC 1 cut(s) 872
BstNI CCWGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 6 cut(s) 60, 662, 796, 887, 1228, 1483
BstSFI CTRYAG 2 cut(s) 777, 993
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 6 cut(s) 123, 498, 619, 744, 1040, 1043
BstV2I GAAGAC 1 cut(s) 1359
BstX2I RGATCY 3 cut(s) 32, 301, 820
BstYI RGATCY 3 cut(s) 32, 301, 820
BsuRI GGCC 2 cut(s) 74, 132
BtsCI GGATG 2 cut(s) 706, 1091
BtsIMutI CAGTG 1 cut(s) 1219
BveI ACCTGC 1 cut(s) 1460
Cac8I GCNNGC 1 cut(s) 660
CfoI GCGC 3 cut(s) 192, 1050, 1287
Cfr10I RCCGGY 1 cut(s) 1132
Cfr13I GGNCC 3 cut(s) 73, 131, 1346
CseI GACGC 1 cut(s) 1473
CsiI ACCWGGT 1 cut(s) 1228
Csp6I GTAC 4 cut(s) 307, 790, 1223, 1303
CspAI ACCGGT 1 cut(s) 1132
CviAII CATG 2 cut(s) 322, 349
CviQI GTAC 4 cut(s) 307, 790, 1223, 1303
DdeI CTNAG 8 cut(s) 249, 285, 876, 971, 981, 1035, 1250, 1299
Eam1104I CTCTTC 6 cut(s) 92, 104, 275, 389, 512, 563
EarI CTCTTC 6 cut(s) 92, 104, 275, 389, 512, 563
EciI GGCGGA 3 cut(s) 214, 368, 497
Eco130I CCWWGG 2 cut(s) 710, 1341
Eco47I GGWCC 1 cut(s) 1346
Eco47III AGCGCT 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 1167
EcoRII CCWGG 6 cut(s) 60, 662, 796, 887, 1228, 1483
EcoT14I CCWWGG 2 cut(s) 710, 1341
ErhI CCWWGG 2 cut(s) 710, 1341
FaeI CATG 2 cut(s) 325, 352
FaqI GGGAC 1 cut(s) 1018
FatI CATG 2 cut(s) 321, 348
FauI CCCGC 1 cut(s) 928
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 8 cut(s) 72, 112, 512, 608, 758, 920, 1029, 1032
FokI GGATG 2 cut(s) 693, 1078
Fsp4HI GCNGC 8 cut(s) 72, 112, 512, 608, 758, 920, 1029, 1032
FspBI CTAG 3 cut(s) 50, 1098, 1178
FspI TGCGCA 1 cut(s) 1049
GlaI GCGC 3 cut(s) 191, 1049, 1286
GluI GCNGC 8 cut(s) 72, 112, 512, 608, 758, 920, 1029, 1032
GsaI CCCAGC 1 cut(s) 1076
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 2 cut(s) 74, 132
HapII CCGG 4 cut(s) 497, 675, 1133, 1349
HgaI GACGC 1 cut(s) 1473
HhaI GCGC 3 cut(s) 192, 1050, 1287
Hin1I GRCGYC 1 cut(s) 1465
Hin1II CATG 2 cut(s) 325, 352
Hin6I GCGC 3 cut(s) 190, 1048, 1285
HinP1I GCGC 3 cut(s) 190, 1048, 1285
HindIII AAGCTT 1 cut(s) 1397
HinfI GANTC 7 cut(s) 238, 291, 500, 773, 880, 1291, 1433
HpaII CCGG 4 cut(s) 497, 675, 1133, 1349
HphI GGTGA 9 cut(s) 310, 355, 382, 409, 568, 1025, 1091, 1399, 1438
Hpy166II GTNNAC 4 cut(s) 337, 343, 363, 439
Hpy188I TCNGA 4 cut(s) 127, 505, 877, 1038
Hpy188III TCNNGA 7 cut(s) 242, 497, 595, 675, 764, 1349, 1437
Hpy8I GTNNAC 4 cut(s) 337, 343, 363, 439
Hpy99I CGWCG 3 cut(s) 179, 263, 1413
HpyAV CCTTC 6 cut(s) 181, 231, 580, 675, 1010, 1163
HpyCH4IV ACGT 4 cut(s) 339, 564, 949, 1420
HpyCH4V TGCA 7 cut(s) 535, 615, 749, 953, 1128, 1449, 1461
HpyF3I CTNAG 8 cut(s) 249, 285, 876, 971, 981, 1035, 1250, 1299
HpySE526I ACGT 4 cut(s) 339, 564, 949, 1420
Hsp92I GRCGYC 1 cut(s) 1465
Hsp92II CATG 2 cut(s) 325, 352
HspAI GCGC 3 cut(s) 190, 1048, 1285
Kpn2I TCCGGA 3 cut(s) 496, 674, 1348
LguI GCTCTTC 2 cut(s) 275, 512
LmnI GCTCC 2 cut(s) 499, 1156
Lsp1109I GCAGC 6 cut(s) 123, 498, 619, 744, 1040, 1043
LweI GCATC 5 cut(s) 544, 850, 1099, 1207, 1452
MabI ACCWGGT 1 cut(s) 1228
MaeI CTAG 3 cut(s) 50, 1098, 1178
MaeII ACGT 4 cut(s) 339, 564, 949, 1420
MaeIII GTNAC 1 cut(s) 1487
MflI RGATCY 3 cut(s) 32, 301, 820
MluCI AATT 3 cut(s) 750, 1272, 1471
MlyI GAGTC 6 cut(s) 232, 285, 509, 767, 874, 1442
MmeI TCCRAC 1 cut(s) 1134
MroI TCCGGA 3 cut(s) 496, 674, 1348
MseI TTAA 4 cut(s) 720, 924, 1067, 1241
MspA1I CMGCKG 2 cut(s) 1010, 1076
MspI CCGG 4 cut(s) 497, 675, 1133, 1349
MspR9I CCNGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
Mva1269I GAATGC 2 cut(s) 457, 1050
MvaI CCWGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
MvnI CGCG 1 cut(s) 71
NlaIII CATG 2 cut(s) 325, 352
NlaIV GGNNCC 2 cut(s) 668, 1347
NmuCI GTSAC 1 cut(s) 1487
NsbI TGCGCA 1 cut(s) 1049
NspI RCATGY 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 1460
PciSI GCTCTTC 2 cut(s) 275, 512
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 1417
PctI GAATGC 2 cut(s) 457, 1050
PfeI GAWTC 1 cut(s) 1291
PfoI TCCNGGA 1 cut(s) 887
PinAI ACCGGT 1 cut(s) 1132
PkrI GCNGC 8 cut(s) 73, 113, 513, 609, 759, 921, 1030, 1033
PleI GAGTC 6 cut(s) 232, 285, 508, 767, 874, 1441
PpsI GAGTC 6 cut(s) 232, 285, 508, 767, 874, 1441
Ppu21I YACGTR 1 cut(s) 950
Psp6I CCWGG 6 cut(s) 60, 662, 796, 887, 1228, 1483
PspFI CCCAGC 1 cut(s) 1072
PspGI CCWGG 6 cut(s) 60, 662, 796, 887, 1228, 1483
PspN4I GGNNCC 2 cut(s) 668, 1347
PspPI GGNCC 3 cut(s) 73, 131, 1346
PspXI VCTCGAGB 1 cut(s) 185
PsrI GAACNNNNNNTAC 2 cut(s) 137, 169
PsuI RGATCY 3 cut(s) 32, 301, 820
PvuII CAGCTG 2 cut(s) 1010, 1076
RsaI GTAC 4 cut(s) 308, 791, 1224, 1304
RsaNI GTAC 4 cut(s) 307, 790, 1223, 1303
SapI GCTCTTC 2 cut(s) 275, 512
SaqAI TTAA 4 cut(s) 720, 924, 1067, 1241
SatI GCNGC 8 cut(s) 72, 112, 512, 608, 758, 920, 1029, 1032
Sau96I GGNCC 3 cut(s) 73, 131, 1346
ScaI AGTACT 1 cut(s) 1304
SchI GAGTC 6 cut(s) 232, 285, 509, 767, 874, 1442
ScrFI CCNGG 6 cut(s) 62, 664, 798, 889, 1230, 1485
SexAI ACCWGGT 1 cut(s) 1228
SfaNI GCATC 5 cut(s) 544, 850, 1099, 1207, 1452
SfcI CTRYAG 2 cut(s) 777, 993
Sfr274I CTCGAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 1346
SlaI CTCGAG 1 cut(s) 185
SmlI CTYRAG 3 cut(s) 185, 638, 1306
SmoI CTYRAG 3 cut(s) 185, 638, 1306
Sse9I AATT 3 cut(s) 750, 1272, 1471
SsiI CCGC 9 cut(s) 71, 109, 225, 379, 442, 482, 919, 935, 1095
SspI AATATT 1 cut(s) 1258
SspMI CTAG 3 cut(s) 50, 1098, 1178
StyD4I CCNGG 6 cut(s) 60, 662, 796, 887, 1228, 1483
StyI CCWWGG 2 cut(s) 710, 1341
TaiI ACGT 4 cut(s) 342, 567, 952, 1423
TaqI TCGA 5 cut(s) 186, 258, 450, 1408, 1436
TasI AATT 3 cut(s) 750, 1272, 1471
TatI WGTACW 2 cut(s) 1222, 1302
TauI GCSGC 2 cut(s) 74, 922
TfiI GAWTC 1 cut(s) 1291
Tru1I TTAA 4 cut(s) 720, 924, 1067, 1241
Tru9I TTAA 4 cut(s) 720, 924, 1067, 1241
TscAI CASTG 1 cut(s) 1219
TseFI GTSAC 1 cut(s) 1487
TseI GCWGC 6 cut(s) 111, 511, 607, 757, 1028, 1031
Tsp45I GTSAC 1 cut(s) 1487
TspDTI ATGAA 3 cut(s) 376, 692, 1306
TspGWI ACGGA 2 cut(s) 294, 665
TspRI CASTG 1 cut(s) 1219
VpaK11BI GGWCC 1 cut(s) 1346
XagI CCTNNNNNAGG 1 cut(s) 1167
XceI RCATGY 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 3 cut(s) 50, 1098, 1178
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.