Rh1AG472000

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010247
Physical Location & Seq
Reverse (-)
68400475 .. 68403590
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG472000.1

Sequence Viewer

Length: 1386 bp
ATGATGAGAATGGGTGGAAAGCAAATGACAAGATCCAAATCCCCACTTCTAGTATTGACCCTGGTTCTCGCGGCCCTCTCCCTCCTCTTCTTCTTCTTCCTCTTCTCTTTCCGCAGCGACGGCCCCGCCCCGTTCTCCGATGGCCCACTCCACCCGAACCCGATTTACAAACCCGAAACCTCCTTCGTCGCCTCCCTCGAGCGCTTCCTCCTCTCCCCTCCTTCCGCCGCCGCCCAGATGACTCACGATCCTAAACACCTCGACGATTTGCTCTTCAACACCGACACTAATCGACTCTATGCAGATCCGTACTACCCACTCACCATGCCTGTTAGGGTTTACGTCTACGACATGCCCCCCAAGTTCACCTTCGATCTCCTCCGCCTCTTCATCACCTCCTACAAGGACACCTCCAATCTCACCTCCAATGGAAGCCCCGTCCACCGCCTCATCGAACAGCATTCAATTGATTACTGGCTGTGGGCGGATTTGATAGCTCCGGAGTCGGAGAGGCTGCTGAAGAGCGTAGTGAGAGTGCATCGGCAGGAGGAGGCAGACCTCTTCTACGTTCCCTTCTTCACCACCATTAGCTTCTTCTTGATGGAGAAGCAGCAATGCAAATCGCTTTACAGGGAAGCTCTCAAGTGGATCACGGATCAGCCTGCCTGGAACCGATCCGGAGGAAGGGATCATATAATTCCAGTTCATCATCCTTGGTCGTTTAAGTCTGTTCGCCGATCTGTGAAAAATGCAATTTGGCTGCTTCCTGACATGGACTCTACAGGCAACTGGTACAAGCCAGGACAAGTTTATTTGGAGAAGGATCTCATTCTTCCTTATGTTGCCAATGTTGATCTTTGTGATGCCAGATGTGTATCTGAGACTCAATCCAGGAGAACAACTCTGCTCTTTTTTCGTGGGCGGCTTAAAAGAAATGCGGGAGGGAAGATACGTGCAAAACTTGTAGCAGAACTTAGTGGGGCTGAGGGTGTATCTATAGAGGAGGGCACAGCTGGTGAAGGAGGAAAGGCAGCAGCTCAGAATGGAATGCGCAAGTCTATCTTTTGCTTAAACCCAGCTGGTGATACTCCATCATCCGCTAGATTATTTGATGCCATTTTTAGTGGTTGCATACCGGTCATAGTTAGTGATGAGTTGGAGCTTCCTTTTGAAGGAATACTAGATTATAGAAAGATTGCTTTATTTGTTTCTTCCGGGGATGCTGTGCAACCAGGTTGGCTTTTAACATATCTTAGAAATATTAGCCCTGCTCAAATTGAAGAAATGCGCCAGAATCTTGCTAAGGTATGTGACTGCAATATTGAAGTGAATGGCACCGCTATTTGTATATATTGTGAAAGGTGTACTAGGCATATGCATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

461

Amino Acids

52.29

Weight (kDa)

7.98

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 110 - 417 4.3e-78 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1052
AccB1I GGYRCC 1 cut(s) 1334
AccI GTMKAC 1 cut(s) 345
AccII CGCG 1 cut(s) 71
AccIII TCCGGA 2 cut(s) 499, 677
AclWI GGATC 8 cut(s) 27, 242, 299, 656, 663, 669, 696, 831
AcuI CTGAAG 1 cut(s) 539
AfaI GTAC 3 cut(s) 311, 794, 1366
AfeI AGCGCT 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 684, 1172
AgeI ACCGGT 1 cut(s) 1135
AgsI TTSAA 5 cut(s) 277, 465, 1172, 1280, 1325
AjnI CCWGG 5 cut(s) 60, 665, 799, 890, 1231
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 7 cut(s) 497, 591, 638, 1013, 1037, 1079, 1162
AluI AGCT 7 cut(s) 497, 591, 638, 1013, 1037, 1079, 1162
Alw26I GTCTC 1 cut(s) 875
AlwI GGATC 8 cut(s) 27, 242, 299, 656, 663, 669, 696, 831
Ama87I CYCGRG 1 cut(s) 197
Aor13HI TCCGGA 2 cut(s) 499, 677
Aor51HI AGCGCT 1 cut(s) 203
AoxI GGCC 3 cut(s) 72, 121, 142
ApeKI GCWGC 6 cut(s) 114, 514, 610, 760, 1031, 1034
AsiGI ACCGGT 1 cut(s) 1135
AspLEI GCGC 3 cut(s) 204, 1053, 1290
AspS9I GGNCC 3 cut(s) 73, 122, 143
AsuC2I CCSGG 1 cut(s) 1216
AsuHPI GGTGA 7 cut(s) 313, 358, 385, 412, 571, 1028, 1094
AvaI CYCGRG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 1010
BanI GGYRCC 1 cut(s) 1334
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 6 cut(s) 126, 501, 622, 747, 1043, 1046
BccI CCATC 3 cut(s) 134, 595, 1099
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 5 cut(s) 62, 667, 801, 892, 1233
BcnI CCSGG 1 cut(s) 1216
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 5 cut(s) 50, 1101, 1181, 1368, 1384
BfmI CTRYAG 2 cut(s) 780, 996
BfoI RGCGCY 1 cut(s) 205
Bme1390I CCNGG 6 cut(s) 62, 667, 801, 892, 1216, 1233
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 73, 122, 143
BmiI GGNNCC 3 cut(s) 124, 671, 1336
BmrFI CCNGG 6 cut(s) 62, 667, 801, 892, 1216, 1233
BmsI GCATC 4 cut(s) 547, 853, 1102, 1210
BplI GAGNNNNNCTC 2 cut(s) 886, 918
Bpu10I CCTNAGC 2 cut(s) 984, 1302
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 1216
BsaAI YACGTR 1 cut(s) 953
BsaBI GATNNNNATC 2 cut(s) 37, 874
BsaJI CCNNGG 3 cut(s) 60, 713, 1215
BsaWI WCCGGW 3 cut(s) 499, 677, 1135
Bsc4I CCNNNNNNNGG 2 cut(s) 684, 1172
Bse118I RCCGGY 1 cut(s) 1135
Bse1I ACTGG 3 cut(s) 479, 701, 794
Bse3DI GCAATG 1 cut(s) 620
Bse8I GATNNNNATC 2 cut(s) 37, 874
BseAI TCCGGA 2 cut(s) 499, 677
BseBI CCWGG 5 cut(s) 62, 667, 801, 892, 1233
BseDI CCNNGG 3 cut(s) 60, 713, 1215
BseGI GGATG 3 cut(s) 709, 1094, 1225
BseJI GATNNNNATC 2 cut(s) 37, 874
BseLI CCNNNNNNNGG 2 cut(s) 684, 1172
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 3 cut(s) 870, 975, 1052
BseNI ACTGG 3 cut(s) 479, 701, 794
BseRI GAGGAG 5 cut(s) 74, 200, 368, 563, 1016
BseSI GKGCMC 1 cut(s) 1010
BseXI GCAGC 6 cut(s) 126, 501, 622, 747, 1043, 1046
BseYI CCCAGC 1 cut(s) 1075
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 74, 123, 144
BshNI GGYRCC 1 cut(s) 1334
BshTI ACCGGT 1 cut(s) 1135
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 4 cut(s) 500, 678, 1136, 1215
BslI CCNNNNNNNGG 2 cut(s) 684, 1172
BsmAI GTCTC 1 cut(s) 875
BsmI GAATGC 2 cut(s) 460, 1053
BsnI GGCC 3 cut(s) 74, 123, 144
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 1010
Bsp13I TCCGGA 2 cut(s) 499, 677
BspANI GGCC 3 cut(s) 74, 123, 144
BspCNI CTCAG 3 cut(s) 871, 976, 1051
BspEI TCCGGA 2 cut(s) 499, 677
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 124, 671, 1336
BspPI GGATC 8 cut(s) 27, 242, 299, 656, 663, 669, 696, 831
BspQI GCTCTTC 2 cut(s) 278, 515
BspT107I GGYRCC 1 cut(s) 1334
BsrDI GCAATG 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 1135
BsrI ACTGG 3 cut(s) 479, 701, 794
BssAI RCCGGY 1 cut(s) 1135
BssECI CCNNGG 3 cut(s) 60, 713, 1215
BssT1I CCWWGG 1 cut(s) 713
Bst2UI CCWGG 5 cut(s) 62, 667, 801, 892, 1233
Bst6I CTCTTC 6 cut(s) 92, 107, 278, 392, 515, 566
BstBAI YACGTR 1 cut(s) 953
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 6 cut(s) 879, 974, 984, 1038, 1253, 1302
BstENI CCTNNNNNAGG 1 cut(s) 1170
BstF5I GGATG 3 cut(s) 709, 1094, 1225
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 3 cut(s) 204, 1053, 1290
BstMAI GTCTC 1 cut(s) 875
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 5 cut(s) 62, 667, 801, 892, 1233
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 6 cut(s) 60, 665, 799, 890, 1214, 1231
BstSFI CTRYAG 2 cut(s) 780, 996
BstSLI GKGCMC 1 cut(s) 1010
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 6 cut(s) 126, 501, 622, 747, 1043, 1046
BstX2I RGATCY 3 cut(s) 32, 304, 823
BstYI RGATCY 3 cut(s) 32, 304, 823
BsuRI GGCC 3 cut(s) 74, 123, 144
BtsCI GGATG 3 cut(s) 709, 1094, 1225
Cac8I GCNNGC 1 cut(s) 663
CfoI GCGC 3 cut(s) 204, 1053, 1290
Cfr10I RCCGGY 1 cut(s) 1135
Cfr13I GGNCC 3 cut(s) 73, 122, 143
CsiI ACCWGGT 1 cut(s) 1231
Csp6I GTAC 3 cut(s) 310, 793, 1365
CspAI ACCGGT 1 cut(s) 1135
CviAII CATG 3 cut(s) 325, 352, 772
CviQI GTAC 3 cut(s) 310, 793, 1365
DdeI CTNAG 6 cut(s) 879, 974, 984, 1038, 1253, 1302
Eam1104I CTCTTC 6 cut(s) 92, 107, 278, 392, 515, 566
EarI CTCTTC 6 cut(s) 92, 107, 278, 392, 515, 566
EciI GGCGGA 3 cut(s) 214, 371, 500
Eco130I CCWWGG 1 cut(s) 713
Eco47III AGCGCT 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 1170
EcoRII CCWGG 5 cut(s) 60, 665, 799, 890, 1231
EcoT14I CCWWGG 1 cut(s) 713
EcoT22I ATGCAT 1 cut(s) 1380
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 3 cut(s) 328, 355, 775
FalI AAGNNNNNCTT 4 cut(s) 353, 385, 1046, 1078
FatI CATG 3 cut(s) 324, 351, 771
FauI CCCGC 2 cut(s) 133, 931
FauNDI CATATG 1 cut(s) 1374
FblI GTMKAC 1 cut(s) 345
FokI GGATG 3 cut(s) 696, 1081, 1232
FspBI CTAG 5 cut(s) 50, 1101, 1181, 1368, 1384
FspI TGCGCA 1 cut(s) 1052
GlaI GCGC 3 cut(s) 203, 1052, 1289
GsaI CCCAGC 1 cut(s) 1079
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 3 cut(s) 74, 123, 144
HapII CCGG 4 cut(s) 500, 678, 1136, 1215
HhaI GCGC 3 cut(s) 204, 1053, 1290
Hin1II CATG 3 cut(s) 328, 355, 775
Hin6I GCGC 3 cut(s) 202, 1051, 1288
HinP1I GCGC 3 cut(s) 202, 1051, 1288
HinfI GANTC 6 cut(s) 241, 294, 503, 776, 883, 1294
HpaII CCGG 4 cut(s) 500, 678, 1136, 1215
HphI GGTGA 7 cut(s) 313, 358, 385, 412, 571, 1028, 1094
Hpy166II GTNNAC 5 cut(s) 340, 346, 366, 442, 1365
Hpy188I TCNGA 4 cut(s) 139, 508, 880, 1041
Hpy188III TCNNGA 5 cut(s) 245, 500, 598, 678, 767
Hpy8I GTNNAC 5 cut(s) 340, 346, 366, 442, 1365
Hpy99I CGWCG 3 cut(s) 122, 191, 266
HpyAV CCTTC 8 cut(s) 193, 231, 379, 583, 678, 814, 1013, 1166
HpyCH4IV ACGT 3 cut(s) 342, 567, 952
HpyCH4V TGCA 9 cut(s) 302, 538, 618, 752, 956, 1131, 1228, 1317, 1378
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 6 cut(s) 879, 974, 984, 1038, 1253, 1302
HpySE526I ACGT 3 cut(s) 342, 567, 952
Hsp92II CATG 3 cut(s) 328, 355, 775
HspAI GCGC 3 cut(s) 202, 1051, 1288
Kpn2I TCCGGA 2 cut(s) 499, 677
LguI GCTCTTC 2 cut(s) 278, 515
LmnI GCTCC 2 cut(s) 502, 1159
Lsp1109I GCAGC 6 cut(s) 126, 501, 622, 747, 1043, 1046
LweI GCATC 4 cut(s) 547, 853, 1102, 1210
MabI ACCWGGT 1 cut(s) 1231
MaeI CTAG 5 cut(s) 50, 1101, 1181, 1368, 1384
MaeII ACGT 3 cut(s) 342, 567, 952
MaeIII GTNAC 1 cut(s) 1310
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 3 cut(s) 32, 304, 823
MhlI GDGCHC 1 cut(s) 1010
MluCI AATT 4 cut(s) 465, 696, 753, 1275
MlyI GAGTC 5 cut(s) 235, 288, 512, 770, 877
MmeI TCCRAC 2 cut(s) 486, 1137
Mph1103I ATGCAT 1 cut(s) 1380
MroI TCCGGA 2 cut(s) 499, 677
MseI TTAA 4 cut(s) 723, 927, 1070, 1244
MspA1I CMGCKG 2 cut(s) 1013, 1079
MspI CCGG 4 cut(s) 500, 678, 1136, 1215
MspR9I CCNGG 6 cut(s) 62, 667, 801, 892, 1216, 1233
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 2 cut(s) 460, 1053
MvaI CCWGG 5 cut(s) 62, 667, 801, 892, 1233
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 120
NciI CCSGG 1 cut(s) 1216
NdeI CATATG 1 cut(s) 1374
NlaIII CATG 3 cut(s) 328, 355, 775
NlaIV GGNNCC 3 cut(s) 124, 671, 1336
NmuCI GTSAC 1 cut(s) 1310
NsbI TGCGCA 1 cut(s) 1052
NsiI ATGCAT 1 cut(s) 1380
NspI RCATGY 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 197
PciSI GCTCTTC 2 cut(s) 278, 515
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 2 cut(s) 460, 1053
PfeI GAWTC 1 cut(s) 1294
PfoI TCCNGGA 1 cut(s) 890
PinAI ACCGGT 1 cut(s) 1135
PleI GAGTC 5 cut(s) 235, 288, 511, 770, 877
PpsI GAGTC 5 cut(s) 235, 288, 511, 770, 877
Ppu21I YACGTR 1 cut(s) 953
Psp6I CCWGG 5 cut(s) 60, 665, 799, 890, 1231
PspFI CCCAGC 1 cut(s) 1075
PspGI CCWGG 5 cut(s) 60, 665, 799, 890, 1231
PspN4I GGNNCC 3 cut(s) 124, 671, 1336
PspPI GGNCC 3 cut(s) 73, 122, 143
PspXI VCTCGAGB 1 cut(s) 197
PsrI GAACNNNNNNTAC 2 cut(s) 149, 181
PsuI RGATCY 3 cut(s) 32, 304, 823
PvuII CAGCTG 2 cut(s) 1013, 1079
RsaI GTAC 3 cut(s) 311, 794, 1366
RsaNI GTAC 3 cut(s) 310, 793, 1365
SapI GCTCTTC 2 cut(s) 278, 515
SaqAI TTAA 4 cut(s) 723, 927, 1070, 1244
Sau96I GGNCC 3 cut(s) 73, 122, 143
SchI GAGTC 5 cut(s) 235, 288, 512, 770, 877
ScrFI CCNGG 6 cut(s) 62, 667, 801, 892, 1216, 1233
SduI GDGCHC 1 cut(s) 1010
SexAI ACCWGGT 1 cut(s) 1231
SfaNI GCATC 4 cut(s) 547, 853, 1102, 1210
SfcI CTRYAG 2 cut(s) 780, 996
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 197, 641
SmoI CTYRAG 2 cut(s) 197, 641
Sse9I AATT 4 cut(s) 465, 696, 753, 1275
SspI AATATT 2 cut(s) 1261, 1321
SspMI CTAG 5 cut(s) 50, 1101, 1181, 1368, 1384
StyD4I CCNGG 6 cut(s) 60, 665, 799, 890, 1214, 1231
StyI CCWWGG 1 cut(s) 713
TaiI ACGT 3 cut(s) 345, 570, 955
TaqI TCGA 5 cut(s) 198, 261, 292, 372, 453
TasI AATT 4 cut(s) 465, 696, 753, 1275
TatI WGTACW 1 cut(s) 1364
TauI GCSGC 4 cut(s) 74, 230, 233, 925
TfiI GAWTC 1 cut(s) 1294
Tru1I TTAA 4 cut(s) 723, 927, 1070, 1244
Tru9I TTAA 4 cut(s) 723, 927, 1070, 1244
TseFI GTSAC 1 cut(s) 1310
TseI GCWGC 6 cut(s) 114, 514, 610, 760, 1031, 1034
Tsp45I GTSAC 1 cut(s) 1310
TspDTI ATGAA 2 cut(s) 379, 695
TspGWI ACGGA 2 cut(s) 297, 668
XagI CCTNNNNNAGG 1 cut(s) 1170
XceI RCATGY 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 5 cut(s) 50, 1101, 1181, 1368, 1384
Zsp2I ATGCAT 1 cut(s) 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.