pycom01g24440

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010247
Physical Location & Seq
Reverse (-)
21382476 .. 21384648
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g24440.2

Sequence Viewer

Length: 834 bp
ATGAAAAATGCAATTTGGTTGCTTCCTGATATGGACTCCACTGGCAACTGGTACAAACCTGGACAAGTCTATCTGGAGAAAGATCTAATTCTTCCTTATGTTGCCAATGTTGATTTTTGTGATGCAAGATGCATATCCGAGACTCGATCCAAGAGAACAACTTTGCTCTTTTTTCGCGGCCGGCTTAAAAGAAATGCTGGAGGGAAGATACGTTCACAACTTGTAGCAGAACTAAATGGTGCTGACGGTGTAGCTATAGAGGAAGGGACAGCAGGAGAGACAGGAAAGGCAGCAGCTCAGAATGGAATGCGCAAGTCTGTCTTTTGCTTGAGTCCCGCTGGTGATACTCCATCCTCTGCTAGATTGTTCGATGCCATTGTTAGTGGTTGCATACCAGTCATAGTTAGTGATGAACTGGAACTTCCTTTTGAAGGGCTACTAGATTATAGGAAGATATCTTTATTTATTTCTTCTAGTGACGCTGTACGACCAGGTTGGCTTATAACATATCTTAGAAACATTAGCCATGCTCAAATAGAGGAACTGCGTCAGGATCTTGCCAAGTACTCAAGACATTTCCTCTACTCCAGTCCAGCCCAGCCCTTGGGTCCGGAAGACTTGGTTTGGAGAATGATGGCTGGTAAGTTGGTTAACATAAAGCTTCACACTCGGAGATCTCAACGAGTGGTGAAAGAGTCAAGAAGTATCTGCACTTGTGAGTGCAAGCATGCCAACTCTACAACCGCAGTTGCAGTTGATTGTGTGGGAATTGGTTATTCTTCAACTAGTGAGCTGCACATGTTTGGATATTGGGTGGGCCGTAATCGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

278

Amino Acids

30.77

Weight (kDa)

8.87

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
Acc16I TGCGCA 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 604
AccII CGCG 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 610
AciI CCGC 3 cut(s) 177, 336, 744
AclWI GGATC 2 cut(s) 141, 561
AcoI YGGCCR 1 cut(s) 178
AfaI GTAC 3 cut(s) 53, 486, 566
AfiI CCNNNNNNNGG 2 cut(s) 431, 604
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 2 cut(s) 431, 783
AhlI ACTAGT 1 cut(s) 785
AjnI CCWGG 2 cut(s) 58, 490
AloI GAACNNNNNNTCC 2 cut(s) 196, 228
AluBI AGCT 4 cut(s) 254, 296, 661, 793
AluI AGCT 4 cut(s) 254, 296, 661, 793
Alw26I GTCTC 2 cut(s) 134, 272
AlwI GGATC 2 cut(s) 141, 561
Aor13HI TCCGGA 1 cut(s) 610
AoxI GGCC 2 cut(s) 178, 817
ApeKI GCWGC 3 cut(s) 290, 293, 793
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 608, 817
AsuHPI GGTGA 2 cut(s) 353, 700
AvaII GGWCC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 621
BbvI GCAGC 3 cut(s) 302, 305, 780
BccI CCATC 2 cut(s) 358, 628
BceAI ACGGC 1 cut(s) 804
BciT130I CCWGG 2 cut(s) 60, 492
BcoDI GTCTC 2 cut(s) 134, 272
BcuI ACTAGT 1 cut(s) 785
BfaI CTAG 4 cut(s) 360, 440, 474, 786
BfmI CTRYAG 1 cut(s) 255
BglII AGATCT 2 cut(s) 82, 674
BisI GCNGC 4 cut(s) 178, 291, 294, 794
BlsI GCNGC 4 cut(s) 179, 292, 295, 795
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 60, 492
Bme18I GGWCC 1 cut(s) 608
BmgT120I GGNCC 2 cut(s) 608, 817
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 2 cut(s) 60, 492
BmsI GCATC 3 cut(s) 112, 119, 361
BpiI GAAGAC 1 cut(s) 621
BpmI CTGGAG 3 cut(s) 95, 219, 571
BpuEI CTTGAG 2 cut(s) 349, 553
BsaBI GATNNNNATC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 604
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 5 cut(s) 46, 53, 395, 420, 588
Bse8I GATNNNNATC 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 610
BseBI CCWGG 2 cut(s) 60, 492
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 1 cut(s) 350
BseJI GATNNNNATC 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 431, 604
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 5 cut(s) 46, 53, 395, 420, 588
BseX3I CGGCCG 1 cut(s) 178
BseXI GCAGC 3 cut(s) 302, 305, 780
BseYI CCCAGC 1 cut(s) 597
BsgI GTGCAG 2 cut(s) 694, 779
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 180, 819
BsiEI CGRYCG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 181, 611
BslFI GGGAC 2 cut(s) 280, 318
BslI CCNNNNNNNGG 2 cut(s) 431, 604
BsmAI GTCTC 2 cut(s) 134, 272
BsmFI GGGAC 2 cut(s) 280, 318
BsmI GAATGC 1 cut(s) 312
BsnI GGCC 2 cut(s) 180, 819
Bsp13I TCCGGA 1 cut(s) 610
Bsp143I GATC 4 cut(s) 82, 146, 553, 674
BspACI CCGC 3 cut(s) 177, 336, 744
BspANI GGCC 2 cut(s) 180, 819
BspCNI CTCAG 1 cut(s) 310
BspEI TCCGGA 1 cut(s) 610
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 609
BspPI GGATC 2 cut(s) 141, 561
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 5 cut(s) 46, 53, 395, 420, 588
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 4 cut(s) 82, 146, 553, 674
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 60, 492
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 182, 725, 729
BstDEI CTNAG 2 cut(s) 297, 512
BstENI CCTNNNNNAGG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 350
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 4 cut(s) 85, 149, 556, 677
BstMAI GTCTC 2 cut(s) 134, 272
BstMBI GATC 4 cut(s) 82, 146, 553, 674
BstMCI CGRYCG 1 cut(s) 181
BstNI CCWGG 2 cut(s) 60, 492
BstNSI RCATGY 2 cut(s) 731, 802
BstSCI CCNGG 2 cut(s) 58, 490
BstSFI CTRYAG 1 cut(s) 255
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 302, 305, 780
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 3 cut(s) 82, 553, 674
BstYI RGATCY 3 cut(s) 82, 553, 674
BstZI CGGCCG 1 cut(s) 178
BsuRI GGCC 2 cut(s) 180, 819
BtsCI GGATG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 182, 725, 729
CfoI GCGC 1 cut(s) 312
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 608, 817
CseI GACGC 2 cut(s) 488, 536
CsiI ACCWGGT 1 cut(s) 490
Csp6I GTAC 3 cut(s) 52, 485, 565
CviAII CATG 3 cut(s) 527, 728, 799
CviQI GTAC 3 cut(s) 52, 485, 565
DdeI CTNAG 2 cut(s) 297, 512
DpnI GATC 4 cut(s) 84, 148, 555, 676
DpnII GATC 4 cut(s) 82, 146, 553, 674
EaeI YGGCCR 1 cut(s) 178
EagI CGGCCG 1 cut(s) 178
EclXI CGGCCG 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 603
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 608
Eco52I CGGCCG 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 58, 490
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 3 cut(s) 530, 731, 802
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 2 cut(s) 280, 318
FatI CATG 3 cut(s) 526, 727, 798
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 4 cut(s) 178, 291, 294, 794
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 4 cut(s) 178, 291, 294, 794
FspBI CTAG 4 cut(s) 360, 440, 474, 786
FspI TGCGCA 1 cut(s) 311
GlaI GCGC 1 cut(s) 311
GluI GCNGC 4 cut(s) 178, 291, 294, 794
GsaI CCCAGC 1 cut(s) 601
GsuI CTGGAG 3 cut(s) 95, 219, 571
HaeIII GGCC 2 cut(s) 180, 819
HapII CCGG 2 cut(s) 181, 611
HgaI GACGC 2 cut(s) 488, 536
HhaI GCGC 1 cut(s) 312
Hin1II CATG 3 cut(s) 530, 731, 802
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 4 cut(s) 35, 142, 331, 695
HpaI GTTAAC 1 cut(s) 652
HpaII CCGG 2 cut(s) 181, 611
HphI GGTGA 2 cut(s) 353, 700
Hpy166II GTNNAC 2 cut(s) 215, 652
Hpy188I TCNGA 3 cut(s) 139, 300, 672
Hpy188III TCNNGA 6 cut(s) 26, 74, 551, 570, 611, 699
Hpy8I GTNNAC 2 cut(s) 215, 652
HpyAV CCTTC 2 cut(s) 257, 425
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 8 cut(s) 11, 125, 132, 390, 711, 723, 752, 796
HpyF3I CTNAG 2 cut(s) 297, 512
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 3 cut(s) 530, 731, 802
HspAI GCGC 1 cut(s) 310
Kpn2I TCCGGA 1 cut(s) 610
KroI GCCGGC 1 cut(s) 180
KroNI GCCGGC 1 cut(s) 182
KspAI GTTAAC 1 cut(s) 652
Kzo9I GATC 4 cut(s) 82, 146, 553, 674
Lsp1109I GCAGC 3 cut(s) 302, 305, 780
LweI GCATC 3 cut(s) 112, 119, 361
MabI ACCWGGT 1 cut(s) 490
MaeI CTAG 4 cut(s) 360, 440, 474, 786
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 476
MalI GATC 4 cut(s) 84, 148, 555, 676
MboI GATC 4 cut(s) 82, 146, 553, 674
MboII GAAGA 6 cut(s) 83, 217, 462, 463, 626, 771
MflI RGATCY 3 cut(s) 82, 553, 674
MluCI AATT 3 cut(s) 12, 87, 768
MlyI GAGTC 4 cut(s) 29, 136, 340, 704
MnlI CCTC 5 cut(s) 194, 253, 364, 532, 590
Mph1103I ATGCAT 1 cut(s) 134
MroI TCCGGA 1 cut(s) 610
MroNI GCCGGC 1 cut(s) 180
MseI TTAA 2 cut(s) 186, 651
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 2 cut(s) 181, 611
MspR9I CCNGG 2 cut(s) 60, 492
Mva1269I GAATGC 1 cut(s) 312
MvaI CCWGG 2 cut(s) 60, 492
MvnI CGCG 1 cut(s) 177
NaeI GCCGGC 1 cut(s) 182
NdeII GATC 4 cut(s) 82, 146, 553, 674
NgoMIV GCCGGC 1 cut(s) 180
NlaIII CATG 3 cut(s) 530, 731, 802
NlaIV GGNNCC 1 cut(s) 609
NmuCI GTSAC 1 cut(s) 476
NsbI TGCGCA 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 134
NspI RCATGY 2 cut(s) 731, 802
PaeI GCATGC 1 cut(s) 731
PciI ACATGT 1 cut(s) 798
PctI GAATGC 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 604
PkrI GCNGC 4 cut(s) 179, 292, 295, 795
PleI GAGTC 4 cut(s) 29, 136, 339, 703
PpsI GAGTC 4 cut(s) 29, 136, 339, 703
PscI ACATGT 1 cut(s) 798
PsiI TTATAA 1 cut(s) 503
Psp6I CCWGG 2 cut(s) 58, 490
PspFI CCCAGC 1 cut(s) 597
PspGI CCWGG 2 cut(s) 58, 490
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 2 cut(s) 608, 817
PsuI RGATCY 3 cut(s) 82, 553, 674
RsaI GTAC 3 cut(s) 53, 486, 566
RsaNI GTAC 3 cut(s) 52, 485, 565
SaqAI TTAA 2 cut(s) 186, 651
SatI GCNGC 4 cut(s) 178, 291, 294, 794
Sau3AI GATC 4 cut(s) 82, 146, 553, 674
Sau96I GGNCC 2 cut(s) 608, 817
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 4 cut(s) 29, 136, 340, 704
ScrFI CCNGG 2 cut(s) 60, 492
SetI ASST 7 cut(s) 61, 214, 256, 298, 496, 663, 795
SexAI ACCWGGT 1 cut(s) 490
SfaNI GCATC 3 cut(s) 112, 119, 361
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 608
SmlI CTYRAG 2 cut(s) 328, 568
SmoI CTYRAG 2 cut(s) 328, 568
SpeI ACTAGT 1 cut(s) 785
SphI GCATGC 1 cut(s) 731
Sse9I AATT 3 cut(s) 12, 87, 768
SsiI CCGC 3 cut(s) 177, 336, 744
SspMI CTAG 4 cut(s) 360, 440, 474, 786
StyD4I CCNGG 2 cut(s) 58, 490
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 145, 369
TasI AATT 3 cut(s) 12, 87, 768
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 186, 651
Tru9I TTAA 2 cut(s) 186, 651
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 3 cut(s) 290, 293, 793
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 17, 426
TspRI CASTG 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 604
VpaK11BI GGWCC 1 cut(s) 608
XagI CCTNNNNNAGG 1 cut(s) 429
XceI RCATGY 2 cut(s) 731, 802
XspI CTAG 4 cut(s) 360, 440, 474, 786
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.