Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8361875.1

Orthogroup ID

OG0010247

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1069

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8361875.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgcctcttagggtttacgtctacgacatgccccccaagttcacctacgatctcctccgcctcttcagcacctcctacaaggacacctccaatctcacctccaatggaagccccgtccaccgcctcatcgaacagcattcgattgattactggctgtgggcggatttgatagctccggagtcagagaggctgctgaagagcgtagtgagagtgcatcggcaggaggaggcagacctcttctacgttcccttcttcaccaccattagcttcttcttgatggagaagcagcaatgcaaatcgctttacagggaagctctcaagtggatcacggatcagcctgcctggaaccgatccggaggaagggatcatattattccagttcatcatccttggtcgtttaagtctgttcgccgatctgtgaaaaatgcaatttggctgcttcctgatatggactctacaggcaactggtacaagccaggacaagtttatttggagaaagatctcattcttccttatgttgccaatgttgatctttgtgatgccagatgtgtatctgagactcaatccaggagaacaactctgctcttttttcgtgggcggcttaaaagaaatgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

205

Amino Acids

24.25

Weight (kDa)

9.24

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16890
fragaria_vesca	FvH4_7g34020 FvH4_7g34020 FvH4_7g34020
malus_domestica	MD01G1236700.v1.1 MD07G1309300.v1.1
prunus_persica	Prupe.2G326700_v2.0.a1
pyrus_communis	pycom01g24440 pycom07g28130
rosa_chinensis	RchiOBHm_Chr1g0384281
rosa_laevigata	RLG00000026052
rosa_multiflora	Rmu_co8361875.1_g000001 Rmu_sc0018832.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276800
rosa_rugosa	Rorug01G0446400
rosa_samantha	Rh1AG472000 Rh1BG429600 Rh1CG442200 Rh1DG462300 Rh6DG245400
rosa_wichuraiana	Rw1G040070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AccIII	TCCGGA	2 cut(s)	175, 353
AciI	CCGC	4 cut(s)	58, 121, 161, 598
AclWI	GGATC	4 cut(s)	332, 339, 345, 372
AcuI	CTGAAG	2 cut(s)	49, 215
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	360
AjnI	CCWGG	3 cut(s)	341, 475, 566
AluBI	AGCT	3 cut(s)	173, 267, 314
AluI	AGCT	3 cut(s)	173, 267, 314
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	4 cut(s)	332, 339, 345, 372
Aor13HI	TCCGGA	2 cut(s)	175, 353
ApeKI	GCWGC	3 cut(s)	190, 286, 436
AsuHPI	GGTGA	3 cut(s)	34, 88, 247
BbvI	GCAGC	3 cut(s)	177, 298, 423
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	3 cut(s)	343, 477, 568
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	456
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	4 cut(s)	191, 287, 437, 599
BlsI	GCNGC	4 cut(s)	192, 288, 438, 600
Bme1390I	CCNGG	3 cut(s)	343, 477, 568
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	3 cut(s)	343, 477, 568
BmsI	GCATC	2 cut(s)	223, 529
BplI	GAGNNNNNCTC	2 cut(s)	562, 594
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	389
BsaWI	WCCGGW	2 cut(s)	175, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	3 cut(s)	155, 377, 470
Bse3DI	GCAATG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	550
BseAI	TCCGGA	2 cut(s)	175, 353
BseBI	CCWGG	3 cut(s)	343, 477, 568
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	155, 377, 470
BseRI	GAGGAG	2 cut(s)	44, 239
BseXI	GCAGC	3 cut(s)	177, 298, 423
BsiSI	CCGG	2 cut(s)	176, 354
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	136
Bsp13I	TCCGGA	2 cut(s)	175, 353
Bsp143I	GATC	8 cut(s)	49, 324, 331, 350, 364, 413, 499, 529
BspACI	CCGC	4 cut(s)	58, 121, 161, 598
BspCNI	CTCAG	1 cut(s)	547
BspEI	TCCGGA	2 cut(s)	175, 353
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	4 cut(s)	332, 339, 345, 372
BspQI	GCTCTTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	296
BsrI	ACTGG	3 cut(s)	155, 377, 470
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	8 cut(s)	49, 324, 331, 350, 364, 413, 499, 529
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	3 cut(s)	343, 477, 568
Bst6I	CTCTTC	3 cut(s)	68, 191, 242
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	8, 555
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	8 cut(s)	52, 327, 334, 353, 367, 416, 502, 532
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	8 cut(s)	49, 324, 331, 350, 364, 413, 499, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	3 cut(s)	343, 477, 568
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	3 cut(s)	341, 475, 566
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	177, 298, 423
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	1 cut(s)	28
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	8, 555
DpnI	GATC	8 cut(s)	51, 326, 333, 352, 366, 415, 501, 531
DpnII	GATC	8 cut(s)	49, 324, 331, 350, 364, 413, 499, 529
Eam1104I	CTCTTC	3 cut(s)	68, 191, 242
EarI	CTCTTC	3 cut(s)	68, 191, 242
EciI	GGCGGA	2 cut(s)	47, 176
Eco130I	CCWWGG	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	49, 215
EcoRII	CCWGG	3 cut(s)	341, 475, 566
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	1 cut(s)	31
FaiI	YATR	4 cut(s)	29, 369, 449, 516
FatI	CATG	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	191, 287, 437, 599
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	4 cut(s)	191, 287, 437, 599
GluI	GCNGC	4 cut(s)	191, 287, 437, 599
HapII	CCGG	2 cut(s)	176, 354
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	3 cut(s)	179, 452, 559
HpaII	CCGG	2 cut(s)	176, 354
HphI	GGTGA	3 cut(s)	34, 88, 247
Hpy166II	GTNNAC	4 cut(s)	16, 22, 42, 118
Hpy188I	TCNGA	2 cut(s)	184, 556
Hpy188III	TCNNGA	4 cut(s)	176, 274, 354, 443
Hpy8I	GTNNAC	4 cut(s)	16, 22, 42, 118
HpyAV	CCTTC	2 cut(s)	259, 354
HpyCH4IV	ACGT	2 cut(s)	18, 243
HpyCH4V	TGCA	4 cut(s)	214, 294, 428, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	2 cut(s)	8, 555
HpySE526I	ACGT	2 cut(s)	18, 243
Hsp92II	CATG	1 cut(s)	31
Kpn2I	TCCGGA	2 cut(s)	175, 353
Kzo9I	GATC	8 cut(s)	49, 324, 331, 350, 364, 413, 499, 529
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	3 cut(s)	177, 298, 423
LweI	GCATC	2 cut(s)	223, 529
MaeII	ACGT	2 cut(s)	18, 243
MalI	GATC	8 cut(s)	51, 326, 333, 352, 366, 415, 501, 531
MboI	GATC	8 cut(s)	49, 324, 331, 350, 364, 413, 499, 529
MboII	GAAGA	6 cut(s)	55, 208, 229, 244, 262, 500
MflI	RGATCY	1 cut(s)	499
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	3 cut(s)	188, 446, 553
MroI	TCCGGA	2 cut(s)	175, 353
MseI	TTAA	2 cut(s)	399, 603
MspI	CCGG	2 cut(s)	176, 354
MspR9I	CCNGG	3 cut(s)	343, 477, 568
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	3 cut(s)	343, 477, 568
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	8 cut(s)	49, 324, 331, 350, 364, 413, 499, 529
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	4 cut(s)	192, 288, 438, 600
PleI	GAGTC	3 cut(s)	187, 446, 553
PpsI	GAGTC	3 cut(s)	187, 446, 553
Psp6I	CCWGG	3 cut(s)	341, 475, 566
PspGI	CCWGG	3 cut(s)	341, 475, 566
PspN4I	GGNNCC	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	399, 603
SatI	GCNGC	4 cut(s)	191, 287, 437, 599
Sau3AI	GATC	8 cut(s)	49, 324, 331, 350, 364, 413, 499, 529
SchI	GAGTC	3 cut(s)	188, 446, 553
ScrFI	CCNGG	3 cut(s)	343, 477, 568
SfaNI	GCATC	2 cut(s)	223, 529
SfcI	CTRYAG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	4 cut(s)	58, 121, 161, 598
StyD4I	CCNGG	3 cut(s)	341, 475, 566
StyI	CCWWGG	1 cut(s)	389
TaiI	ACGT	2 cut(s)	21, 246
TaqI	TCGA	2 cut(s)	129, 140
TasI	AATT	1 cut(s)	429
TauI	GCSGC	1 cut(s)	601
Tru1I	TTAA	2 cut(s)	399, 603
Tru9I	TTAA	2 cut(s)	399, 603
TseI	GCWGC	3 cut(s)	190, 286, 436
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	344
XceI	RCATGY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.