Rh1CG442200

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010247
Physical Location & Seq
Reverse (-)
69524598 .. 69528400
3803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG442200.1

Sequence Viewer

Length: 1065 bp
ATGATGAGAATGGGTGGAAAGCAAATGACAAGATCCAAATCCCCACTACTAGTATTGACCCTGGTTCTCGCGGCCCTCTCCCTCCTCTTCTTCTTCCTCTTCTCTTTCCGCAGCGACGGCCCCGCCCCCTTCTCCGATGGCCCACTCCACCCGAACCCGATTTACAAACCCGAAACCTCCTTCGTCGCCTCCCTCGAGCGCTTCCTCCTCGCTTTTCACAACTCCCCTCCTTCCGCCGCCGCCACCCAGATGACTCACGATCCTAAACACCTCGACGATTTGCTCTTCAACACCGACACTAATCGACTCTATGCAGATCCGTACTACCCACTCACCATGCCTATTAGGGTTTACGTCTACGACATGCCCCCCAAGTTCACCTACGATCTCCTCCGCCTCTTCATCACCTCCTACAAGGACACCTCCAATCTCACCTCCAATGGAAGCCCCGTCCACCGCCTCATCGAACAGCATTCAATTGATTACTGGCTGTGGGCGGATTTGATAGCTCCGGAATCAGAGAGGCTGCTGAAAACCGTAGTGAGAGTGCATCGGCAGCAGGAGGCAGACCTCTTCTACGTTCCCTTCTTCACCACCATTAGCTTCTTCTTGATGGAGAAGCAGCAATGCAAATCGCTTTACAGGGAAGCGCTCAAGTGGATCACGGATCAGCCTGCCTGGAACCGATCCGCAGGAAGGGATCATATAATTCCAGTTCATCATCCTTGGTCGTTTAAGTCTGTTCGCCGATCTGTGAAAAATGCAATTTGGCTGCTTCCTGACATGGACTCTACAGGCAACTGGTACAAGCCAGGACAAGTTTATTTGGAGAAAGATCTCATTCTTCCTTATGTTGCCAATGTTGATCTTTGCGATGCCAGATGTGTATCTGAGACTCAATCGAGGAGAACAACTCTGCTCTTTTTTCGTGGGCGGCTTAAAAGAAATGCGGTAAGAATTTCAATTTGGAAATGGACTTCTTTGATATTAATTATATTGTTAGAGTGTGATGCTTTAGTTTATGTTGATTCATTTCTGGTGGGGGAGAAACTCTTCCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

354

Amino Acids

41.22

Weight (kDa)

9.01

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 114 - 324 4.2e-41 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 71
AccIII TCCGGA 1 cut(s) 511
AclWI GGATC 7 cut(s) 27, 254, 311, 668, 675, 681, 708
AcsI RAATTY 1 cut(s) 957
AfaI GTAC 2 cut(s) 323, 806
AfeI AGCGCT 2 cut(s) 200, 651
AfiI CCNNNNNNNGG 1 cut(s) 696
AgsI TTSAA 3 cut(s) 289, 477, 963
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 3 cut(s) 60, 677, 811
AjuI GAANNNNNNNTTGG 2 cut(s) 949, 981
AluBI AGCT 2 cut(s) 509, 603
AluI AGCT 2 cut(s) 509, 603
Alw26I GTCTC 1 cut(s) 887
AlwI GGATC 7 cut(s) 27, 254, 311, 668, 675, 681, 708
Ama87I CYCGRG 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 511
Aor51HI AGCGCT 2 cut(s) 200, 651
AoxI GGCC 3 cut(s) 72, 118, 139
ApeKI GCWGC 5 cut(s) 111, 526, 556, 622, 772
ApoI RAATTY 1 cut(s) 957
AseI ATTAAT 1 cut(s) 989
Asp700I GAANNNNTTC 1 cut(s) 1052
AspLEI GCGC 2 cut(s) 201, 652
AspS9I GGNCC 3 cut(s) 73, 119, 140
AsuHPI GGTGA 5 cut(s) 325, 370, 397, 424, 583
AvaI CYCGRG 1 cut(s) 194
BbvI GCAGC 5 cut(s) 123, 513, 568, 634, 759
BccI CCATC 2 cut(s) 131, 607
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 3 cut(s) 62, 679, 813
BcoDI GTCTC 1 cut(s) 887
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 792
BfoI RGCGCY 2 cut(s) 202, 653
BglII AGATCT 1 cut(s) 835
BisI GCNGC 9 cut(s) 72, 112, 237, 240, 527, 557, 623, 773, 935
BlsI GCNGC 9 cut(s) 73, 113, 238, 241, 528, 558, 624, 774, 936
Bme1390I CCNGG 3 cut(s) 62, 679, 813
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 3 cut(s) 73, 119, 140
BmiI GGNNCC 2 cut(s) 121, 683
BmrFI CCNGG 3 cut(s) 62, 679, 813
BmsI GCATC 3 cut(s) 559, 865, 1000
BplI GAGNNNNNCTC 2 cut(s) 898, 930
BpuEI CTTGAG 1 cut(s) 638
BsaBI GATNNNNATC 2 cut(s) 37, 886
BsaJI CCNNGG 2 cut(s) 60, 725
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 1 cut(s) 696
Bse1I ACTGG 3 cut(s) 491, 713, 806
Bse3DI GCAATG 1 cut(s) 632
Bse8I GATNNNNATC 2 cut(s) 37, 886
BseAI TCCGGA 1 cut(s) 511
BseBI CCWGG 3 cut(s) 62, 679, 813
BseDI CCNNGG 2 cut(s) 60, 725
BseGI GGATG 1 cut(s) 721
BseJI GATNNNNATC 2 cut(s) 37, 886
BseLI CCNNNNNNNGG 1 cut(s) 696
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 3 cut(s) 491, 713, 806
BseRI GAGGAG 4 cut(s) 74, 197, 380, 919
BseXI GCAGC 5 cut(s) 123, 513, 568, 634, 759
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 74, 120, 141
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 696
BsmAI GTCTC 1 cut(s) 887
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 3 cut(s) 74, 120, 141
BsoBI CYCGRG 1 cut(s) 194
Bsp13I TCCGGA 1 cut(s) 511
BspANI GGCC 3 cut(s) 74, 120, 141
BspCNI CTCAG 1 cut(s) 883
BspEI TCCGGA 1 cut(s) 511
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 121, 683
BspPI GGATC 7 cut(s) 27, 254, 311, 668, 675, 681, 708
BspQI GCTCTTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 632
BsrI ACTGG 3 cut(s) 491, 713, 806
BssECI CCNNGG 2 cut(s) 60, 725
BssT1I CCWWGG 1 cut(s) 725
Bst2UI CCWGG 3 cut(s) 62, 679, 813
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 6 cut(s) 92, 104, 290, 404, 578, 1058
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 1 cut(s) 891
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 2 cut(s) 202, 653
BstHHI GCGC 2 cut(s) 201, 652
BstMAI GTCTC 1 cut(s) 887
BstMWI GCNNNNNNNGC 2 cut(s) 117, 556
BstNI CCWGG 3 cut(s) 62, 679, 813
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 60, 677, 811
BstSFI CTRYAG 1 cut(s) 792
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 5 cut(s) 123, 513, 568, 634, 759
BstX2I RGATCY 3 cut(s) 32, 316, 835
BstYI RGATCY 3 cut(s) 32, 316, 835
BsuRI GGCC 3 cut(s) 74, 120, 141
BtgZI GCGATG 1 cut(s) 888
BtsCI GGATG 1 cut(s) 721
Cac8I GCNNGC 1 cut(s) 675
CfoI GCGC 2 cut(s) 201, 652
Cfr13I GGNCC 3 cut(s) 73, 119, 140
Csp6I GTAC 2 cut(s) 322, 805
CviAII CATG 3 cut(s) 337, 364, 784
CviQI GTAC 2 cut(s) 322, 805
DdeI CTNAG 1 cut(s) 891
Eam1104I CTCTTC 6 cut(s) 92, 104, 290, 404, 578, 1058
EarI CTCTTC 6 cut(s) 92, 104, 290, 404, 578, 1058
EciI GGCGGA 3 cut(s) 223, 383, 512
Eco130I CCWWGG 1 cut(s) 725
Eco47III AGCGCT 2 cut(s) 200, 651
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 3 cut(s) 60, 677, 811
EcoT14I CCWWGG 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 3 cut(s) 340, 367, 787
FaiI YATR 9 cut(s) 312, 338, 365, 705, 707, 785, 852, 995, 1023
FatI CATG 3 cut(s) 336, 363, 783
FauI CCCGC 1 cut(s) 130
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 9 cut(s) 72, 112, 237, 240, 527, 557, 623, 773, 935
FokI GGATG 1 cut(s) 708
Fsp4HI GCNGC 9 cut(s) 72, 112, 237, 240, 527, 557, 623, 773, 935
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 200, 651
GluI GCNGC 9 cut(s) 72, 112, 237, 240, 527, 557, 623, 773, 935
HaeII RGCGCY 2 cut(s) 202, 653
HaeIII GGCC 3 cut(s) 74, 120, 141
HapII CCGG 1 cut(s) 512
HhaI GCGC 2 cut(s) 201, 652
Hin1II CATG 3 cut(s) 340, 367, 787
Hin6I GCGC 2 cut(s) 199, 650
HinP1I GCGC 2 cut(s) 199, 650
HinfI GANTC 6 cut(s) 253, 306, 515, 788, 895, 1028
HpaII CCGG 1 cut(s) 512
HphI GGTGA 5 cut(s) 325, 370, 397, 424, 583
Hpy166II GTNNAC 4 cut(s) 352, 358, 378, 454
Hpy188I TCNGA 3 cut(s) 136, 520, 892
Hpy188III TCNNGA 4 cut(s) 257, 512, 610, 779
Hpy8I GTNNAC 4 cut(s) 352, 358, 378, 454
Hpy99I CGWCG 3 cut(s) 119, 188, 278
HpyAV CCTTC 5 cut(s) 139, 190, 240, 595, 690
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 2 cut(s) 354, 579
HpyCH4V TGCA 4 cut(s) 314, 550, 630, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 556
HpyF3I CTNAG 1 cut(s) 891
HpySE526I ACGT 2 cut(s) 354, 579
Hsp92II CATG 3 cut(s) 340, 367, 787
HspAI GCGC 2 cut(s) 199, 650
Kpn2I TCCGGA 1 cut(s) 511
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 5 cut(s) 123, 513, 568, 634, 759
LweI GCATC 3 cut(s) 559, 865, 1000
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 354, 579
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 3 cut(s) 32, 316, 835
MluCI AATT 7 cut(s) 477, 708, 765, 957, 963, 990, 1058
MlyI GAGTC 4 cut(s) 247, 300, 782, 889
MroI TCCGGA 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 1052
MseI TTAA 3 cut(s) 735, 939, 989
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 3 cut(s) 62, 679, 813
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 3 cut(s) 62, 679, 813
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 117, 556
NlaIII CATG 3 cut(s) 340, 367, 787
NlaIV GGNNCC 2 cut(s) 121, 683
NspI RCATGY 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 1052
PfeI GAWTC 2 cut(s) 515, 1028
PkrI GCNGC 9 cut(s) 73, 113, 238, 241, 528, 558, 624, 774, 936
PleI GAGTC 4 cut(s) 247, 300, 782, 889
PpsI GAGTC 4 cut(s) 247, 300, 782, 889
PshBI ATTAAT 1 cut(s) 989
Psp6I CCWGG 3 cut(s) 60, 677, 811
PspGI CCWGG 3 cut(s) 60, 677, 811
PspN4I GGNNCC 2 cut(s) 121, 683
PspPI GGNCC 3 cut(s) 73, 119, 140
PspXI VCTCGAGB 1 cut(s) 194
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PsuI RGATCY 3 cut(s) 32, 316, 835
RsaI GTAC 2 cut(s) 323, 806
RsaNI GTAC 2 cut(s) 322, 805
RseI CAYNNNNRTG 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 3 cut(s) 735, 939, 989
SatI GCNGC 9 cut(s) 72, 112, 237, 240, 527, 557, 623, 773, 935
Sau96I GGNCC 3 cut(s) 73, 119, 140
SchI GAGTC 4 cut(s) 247, 300, 782, 889
ScrFI CCNGG 3 cut(s) 62, 679, 813
SfaNI GCATC 3 cut(s) 559, 865, 1000
SfcI CTRYAG 1 cut(s) 792
Sfr274I CTCGAG 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 194, 653
SmoI CTYRAG 2 cut(s) 194, 653
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 7 cut(s) 477, 708, 765, 957, 963, 990, 1058
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 3 cut(s) 60, 677, 811
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 2 cut(s) 357, 582
TaqI TCGA 5 cut(s) 195, 273, 304, 465, 902
TasI AATT 7 cut(s) 477, 708, 765, 957, 963, 990, 1058
TauI GCSGC 4 cut(s) 74, 239, 242, 937
TfiI GAWTC 2 cut(s) 515, 1028
Tru1I TTAA 3 cut(s) 735, 939, 989
Tru9I TTAA 3 cut(s) 735, 939, 989
TseI GCWGC 5 cut(s) 111, 526, 556, 622, 772
TspDTI ATGAA 3 cut(s) 391, 707, 1020
TspGWI ACGGA 2 cut(s) 309, 680
VspI ATTAAT 1 cut(s) 989
XapI RAATTY 1 cut(s) 957
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 1 cut(s) 1052
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.