RchiOBHm_Chr1g0384281

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010247
Physical Location & Seq
Reverse (-)
68228778 .. 68232428
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60712

Sequence Viewer

Length: 1509 bp
ATGATGAGAATGGGTGGAAGGCAAATGACAAGATCCAAATCCCCACTTCTAGTATTGACCCTGGTTCTCGCGGCCCTCTCCCTCCTCTTCTTCTTCCTCTTCTCTTTCCGCAGCGATGGCCCCGCCCCGTTCTCCGATGGCCCACTCCACCCGAACCCGATTTACAAACCCGAAACCTCCTTCGTCGCCTCCCTCGAGCGCTTCCTCCTCGCTTTTCACAACTCCCCTCCTTCCGCCCCCCAGAGGACTCACGATCCTGAACACCTCGACGATTTGCTCTTCAACACCGACACTCAGCGACTCTACGCAGATCCCTACTACCCACTCACCATGCCTCTTAGGGTTTACGTCTACGACATGCCCCCCAAGTTCACCTACGATCTCCTCCGCCTCTTCATCACCTCCTACAAGGACACCTCCAATCTCACCTCCAATGGAAGCCCCGTCCACCGCCTCATCGAACAGCATTCGATTGATTACTGGCTGTGGGCGGATTTGATAGCTCCGGAGTCAGAGAGGCTGCTGAAGAGCGTAGTGAGAGTGCATCGGCAGGAGGAGGCAGACCTCTTCTACGTTCCCTTCTTCACCACCATTAGCTTCTTCTTGATGGAGAAGCAGCAATGCAAATCGCTTTACAGGGAAGCTCTCAAGTGGATCACGGATCAGCCTGCCTGGAACCGATCCGGAGGAAGGGATCATATTATTCCAGTTCATCATCCTTGGTCGTTTAAGTCTGTTCGCCGATCTGTGAAAAATGCAATTTGGCTGCTTCCTGATATGGACTCTACAGGCAACTGGTACAAGCCAGGACAAGTTTATTTGGAGAAAGATCTCATTCTTCCTTATGTTGCCAATGTTGATCTTTGTGATGCCAGATGTGTATCTGAGACTCAATCCAGGAGAACAACTCTGCTCTTTTTTCGTGGGCGGCTTAAAAGAAATGCGGGAGGGAAGATACGTGCAAAACTTGTAGCAGAACTTAGTGGGGCTGAGGGTGTATCTATAGAGGAGGGGACAGCTGGAGAAGGAGGAAAGGCAGCAGCTCAGAATGGAATGCGCAAGTCTATATTTTGCTTAAACCCAGCTGGTGATACTCCATCATCTGCTAGATTATTTGATGCCATTGTTAGTGGTTGCATACCGGTCATAGTTAGTGATGAGTTGGAGCTTCCTTTTGAAGGAATACTAGATTATAGAAAGATTGCTTTATTTGTTTCTTCCAGTGATGCTGTACAACCAGGTTGGCTTTTAACATATCTTAGAAATATTAGCCCTGCTCAAATTGAAGAAATGCGCCAGAATCTTGCTAAGTACTCAAGGCATTTCATATATTCCAGTCCTGCTCAACCCTTGGGTCCGGAAGACTTGGTTTGGAGAATGATGGCTGGTAAGTTGGTGAATATCAAGCTTCACACTCGACGATCTCAACGTGTGGTGAAAGAGTCGAGAAGCATCTGCACCTGCGATTGCAGACGCCCCAATTCCACAACCCCAGGTCACTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

502

Amino Acids

57.11

Weight (kDa)

9.03

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 112 - 419 2.7e-79 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1469
Acc16I TGCGCA 1 cut(s) 1058
Acc36I ACCTGC 1 cut(s) 1469
AccI GTMKAC 1 cut(s) 351
AccII CGCG 1 cut(s) 71
AccIII TCCGGA 3 cut(s) 505, 683, 1357
AciI CCGC 9 cut(s) 71, 109, 123, 234, 388, 451, 491, 928, 944
AclWI GGATC 7 cut(s) 27, 248, 305, 662, 669, 675, 702
AcuI CTGAAG 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 1474
AfaI GTAC 3 cut(s) 800, 1233, 1313
AfeI AGCGCT 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 243, 690, 1178
AflIII ACRYGT 1 cut(s) 1429
AgeI ACCGGT 1 cut(s) 1141
AgsI TTSAA 3 cut(s) 283, 1178, 1286
AjnI CCWGG 6 cut(s) 60, 671, 805, 896, 1237, 1492
AluBI AGCT 8 cut(s) 503, 597, 644, 1019, 1043, 1085, 1168, 1408
AluI AGCT 8 cut(s) 503, 597, 644, 1019, 1043, 1085, 1168, 1408
Alw26I GTCTC 1 cut(s) 881
AlwI GGATC 7 cut(s) 27, 248, 305, 662, 669, 675, 702
Ama87I CYCGRG 1 cut(s) 194
Aor13HI TCCGGA 3 cut(s) 505, 683, 1357
Aor51HI AGCGCT 1 cut(s) 200
AoxI GGCC 3 cut(s) 72, 118, 139
ApeKI GCWGC 6 cut(s) 111, 520, 616, 766, 1037, 1040
AsiGI ACCGGT 1 cut(s) 1141
AspLEI GCGC 3 cut(s) 201, 1059, 1296
AspS9I GGNCC 4 cut(s) 73, 119, 140, 1355
AsuHPI GGTGA 8 cut(s) 319, 364, 391, 418, 577, 1100, 1408, 1447
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 1355
BbsI GAAGAC 1 cut(s) 1368
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 6 cut(s) 123, 507, 628, 753, 1049, 1052
BccI CCATC 5 cut(s) 110, 131, 601, 1105, 1375
BciT130I CCWGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
BcoDI GTCTC 1 cut(s) 881
BfaI CTAG 3 cut(s) 50, 1107, 1187
BfmI CTRYAG 2 cut(s) 786, 1002
BfoI RGCGCY 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 1469
BglII AGATCT 1 cut(s) 829
BisI GCNGC 8 cut(s) 72, 112, 521, 617, 767, 929, 1038, 1041
BlsI GCNGC 8 cut(s) 73, 113, 522, 618, 768, 930, 1039, 1042
BmcAI AGTACT 1 cut(s) 1313
Bme1390I CCNGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
Bme18I GGWCC 1 cut(s) 1355
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 4 cut(s) 73, 119, 140, 1355
BmiI GGNNCC 3 cut(s) 121, 677, 1356
BmrFI CCNGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
BmsI GCATC 5 cut(s) 553, 859, 1108, 1216, 1461
BpiI GAAGAC 1 cut(s) 1368
BplI GAGNNNNNCTC 2 cut(s) 892, 924
BpmI CTGGAG 1 cut(s) 1041
Bpu10I CCTNAGC 1 cut(s) 990
BpuEI CTTGAG 2 cut(s) 632, 1300
BsaAI YACGTR 1 cut(s) 959
BsaBI GATNNNNATC 2 cut(s) 37, 880
BsaHI GRCGYC 1 cut(s) 1474
BsaJI CCNNGG 4 cut(s) 60, 719, 1350, 1492
BsaWI WCCGGW 4 cut(s) 505, 683, 1141, 1357
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 690, 1178
Bse118I RCCGGY 1 cut(s) 1141
Bse1I ACTGG 5 cut(s) 485, 707, 800, 1221, 1335
Bse3DI GCAATG 1 cut(s) 626
Bse8I GATNNNNATC 2 cut(s) 37, 880
BseAI TCCGGA 3 cut(s) 505, 683, 1357
BseBI CCWGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
BseDI CCNNGG 4 cut(s) 60, 719, 1350, 1492
BseGI GGATG 1 cut(s) 715
BseJI GATNNNNATC 2 cut(s) 37, 880
BseLI CCNNNNNNNGG 3 cut(s) 243, 690, 1178
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 4 cut(s) 308, 876, 981, 1058
BseNI ACTGG 5 cut(s) 485, 707, 800, 1221, 1335
BseRI GAGGAG 5 cut(s) 74, 197, 374, 569, 1022
BseXI GCAGC 6 cut(s) 123, 507, 628, 753, 1049, 1052
BseYI CCCAGC 1 cut(s) 1081
BsgI GTGCAG 1 cut(s) 1441
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 74, 120, 141
BshTI ACCGGT 1 cut(s) 1141
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 4 cut(s) 506, 684, 1142, 1358
BslFI GGGAC 1 cut(s) 1027
BslI CCNNNNNNNGG 3 cut(s) 243, 690, 1178
BsmAI GTCTC 1 cut(s) 881
BsmFI GGGAC 1 cut(s) 1027
BsmI GAATGC 2 cut(s) 466, 1059
BsnI GGCC 3 cut(s) 74, 120, 141
BsoBI CYCGRG 1 cut(s) 194
Bsp13I TCCGGA 3 cut(s) 505, 683, 1357
Bsp1407I TGTACA 1 cut(s) 1231
BspACI CCGC 9 cut(s) 71, 109, 123, 234, 388, 451, 491, 928, 944
BspANI GGCC 3 cut(s) 74, 120, 141
BspCNI CTCAG 4 cut(s) 307, 877, 982, 1057
BspEI TCCGGA 3 cut(s) 505, 683, 1357
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 121, 677, 1356
BspMI ACCTGC 1 cut(s) 1469
BspPI GGATC 7 cut(s) 27, 248, 305, 662, 669, 675, 702
BspQI GCTCTTC 2 cut(s) 284, 521
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 1 cut(s) 1141
BsrGI TGTACA 1 cut(s) 1231
BsrI ACTGG 5 cut(s) 485, 707, 800, 1221, 1335
BssAI RCCGGY 1 cut(s) 1141
BssECI CCNNGG 4 cut(s) 60, 719, 1350, 1492
BssNI GRCGYC 1 cut(s) 1474
BssT1I CCWWGG 2 cut(s) 719, 1350
Bst2UI CCWGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
Bst6I CTCTTC 6 cut(s) 92, 104, 284, 398, 521, 572
BstACI GRCGYC 1 cut(s) 1474
BstAUI TGTACA 1 cut(s) 1231
BstBAI YACGTR 1 cut(s) 959
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 8 cut(s) 294, 338, 885, 980, 990, 1044, 1259, 1308
BstENI CCTNNNNNAGG 1 cut(s) 1176
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 3 cut(s) 201, 1059, 1296
BstMAI GTCTC 1 cut(s) 881
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 6 cut(s) 60, 671, 805, 896, 1237, 1492
BstSFI CTRYAG 2 cut(s) 786, 1002
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 6 cut(s) 123, 507, 628, 753, 1049, 1052
BstV2I GAAGAC 1 cut(s) 1368
BstX2I RGATCY 3 cut(s) 32, 310, 829
BstYI RGATCY 3 cut(s) 32, 310, 829
BsuRI GGCC 3 cut(s) 74, 120, 141
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 1 cut(s) 1228
BveI ACCTGC 1 cut(s) 1469
Cac8I GCNNGC 1 cut(s) 669
CfoI GCGC 3 cut(s) 201, 1059, 1296
Cfr10I RCCGGY 1 cut(s) 1141
Cfr13I GGNCC 4 cut(s) 73, 119, 140, 1355
CseI GACGC 1 cut(s) 1482
CsiI ACCWGGT 1 cut(s) 1237
Csp6I GTAC 3 cut(s) 799, 1232, 1312
CspAI ACCGGT 1 cut(s) 1141
CviAII CATG 2 cut(s) 331, 358
CviQI GTAC 3 cut(s) 799, 1232, 1312
DdeI CTNAG 8 cut(s) 294, 338, 885, 980, 990, 1044, 1259, 1308
Eam1104I CTCTTC 6 cut(s) 92, 104, 284, 398, 521, 572
EarI CTCTTC 6 cut(s) 92, 104, 284, 398, 521, 572
EciI GGCGGA 3 cut(s) 223, 377, 506
Eco130I CCWWGG 2 cut(s) 719, 1350
Eco47I GGWCC 1 cut(s) 1355
Eco47III AGCGCT 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 1176
EcoRII CCWGG 6 cut(s) 60, 671, 805, 896, 1237, 1492
EcoT14I CCWWGG 2 cut(s) 719, 1350
ErhI CCWWGG 2 cut(s) 719, 1350
FaeI CATG 2 cut(s) 334, 361
FaqI GGGAC 1 cut(s) 1027
FatI CATG 2 cut(s) 330, 357
FauI CCCGC 2 cut(s) 130, 937
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 8 cut(s) 72, 112, 521, 617, 767, 929, 1038, 1041
FokI GGATG 1 cut(s) 702
Fsp4HI GCNGC 8 cut(s) 72, 112, 521, 617, 767, 929, 1038, 1041
FspBI CTAG 3 cut(s) 50, 1107, 1187
FspI TGCGCA 1 cut(s) 1058
GlaI GCGC 3 cut(s) 200, 1058, 1295
GluI GCNGC 8 cut(s) 72, 112, 521, 617, 767, 929, 1038, 1041
GsaI CCCAGC 1 cut(s) 1085
GsuI CTGGAG 1 cut(s) 1041
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 3 cut(s) 74, 120, 141
HapII CCGG 4 cut(s) 506, 684, 1142, 1358
HgaI GACGC 1 cut(s) 1482
HhaI GCGC 3 cut(s) 201, 1059, 1296
Hin1I GRCGYC 1 cut(s) 1474
Hin1II CATG 2 cut(s) 334, 361
Hin6I GCGC 3 cut(s) 199, 1057, 1294
HinP1I GCGC 3 cut(s) 199, 1057, 1294
HindIII AAGCTT 1 cut(s) 1406
HinfI GANTC 7 cut(s) 247, 300, 509, 782, 889, 1300, 1442
HpaII CCGG 4 cut(s) 506, 684, 1142, 1358
HphI GGTGA 8 cut(s) 319, 364, 391, 418, 577, 1100, 1408, 1447
Hpy166II GTNNAC 4 cut(s) 346, 352, 372, 448
Hpy188I TCNGA 4 cut(s) 136, 514, 886, 1047
Hpy188III TCNNGA 8 cut(s) 251, 257, 506, 604, 684, 773, 1358, 1446
Hpy8I GTNNAC 4 cut(s) 346, 352, 372, 448
Hpy99I CGWCG 3 cut(s) 188, 272, 1422
HpyAV CCTTC 7 cut(s) 12, 190, 240, 589, 684, 1019, 1172
HpyCH4IV ACGT 4 cut(s) 348, 573, 958, 1429
HpyCH4V TGCA 7 cut(s) 544, 624, 758, 962, 1137, 1458, 1470
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 8 cut(s) 294, 338, 885, 980, 990, 1044, 1259, 1308
HpySE526I ACGT 4 cut(s) 348, 573, 958, 1429
Hsp92I GRCGYC 1 cut(s) 1474
Hsp92II CATG 2 cut(s) 334, 361
HspAI GCGC 3 cut(s) 199, 1057, 1294
Kpn2I TCCGGA 3 cut(s) 505, 683, 1357
LguI GCTCTTC 2 cut(s) 284, 521
LmnI GCTCC 2 cut(s) 508, 1165
Lsp1109I GCAGC 6 cut(s) 123, 507, 628, 753, 1049, 1052
LweI GCATC 5 cut(s) 553, 859, 1108, 1216, 1461
MabI ACCWGGT 1 cut(s) 1237
MaeI CTAG 3 cut(s) 50, 1107, 1187
MaeII ACGT 4 cut(s) 348, 573, 958, 1429
MaeIII GTNAC 1 cut(s) 1496
MflI RGATCY 3 cut(s) 32, 310, 829
MluCI AATT 3 cut(s) 759, 1281, 1480
MlyI GAGTC 6 cut(s) 241, 294, 518, 776, 883, 1451
MmeI TCCRAC 1 cut(s) 1143
MroI TCCGGA 3 cut(s) 505, 683, 1357
MseI TTAA 4 cut(s) 729, 933, 1076, 1250
MspA1I CMGCKG 2 cut(s) 1019, 1085
MspI CCGG 4 cut(s) 506, 684, 1142, 1358
MspR9I CCNGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
Mva1269I GAATGC 2 cut(s) 466, 1059
MvaI CCWGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 117
NlaIII CATG 2 cut(s) 334, 361
NlaIV GGNNCC 3 cut(s) 121, 677, 1356
NmuCI GTSAC 1 cut(s) 1496
NsbI TGCGCA 1 cut(s) 1058
NspI RCATGY 1 cut(s) 361
PaeR7I CTCGAG 1 cut(s) 194
PaqCI CACCTGC 1 cut(s) 1469
PciSI GCTCTTC 2 cut(s) 284, 521
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 1426
PctI GAATGC 2 cut(s) 466, 1059
PfeI GAWTC 1 cut(s) 1300
PfoI TCCNGGA 1 cut(s) 896
PinAI ACCGGT 1 cut(s) 1141
PkrI GCNGC 8 cut(s) 73, 113, 522, 618, 768, 930, 1039, 1042
PleI GAGTC 6 cut(s) 241, 294, 517, 776, 883, 1450
PpsI GAGTC 6 cut(s) 241, 294, 517, 776, 883, 1450
Ppu21I YACGTR 1 cut(s) 959
Psp6I CCWGG 6 cut(s) 60, 671, 805, 896, 1237, 1492
PspFI CCCAGC 1 cut(s) 1081
PspGI CCWGG 6 cut(s) 60, 671, 805, 896, 1237, 1492
PspN4I GGNNCC 3 cut(s) 121, 677, 1356
PspPI GGNCC 4 cut(s) 73, 119, 140, 1355
PspXI VCTCGAGB 1 cut(s) 194
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PsuI RGATCY 3 cut(s) 32, 310, 829
PvuII CAGCTG 2 cut(s) 1019, 1085
RsaI GTAC 3 cut(s) 800, 1233, 1313
RsaNI GTAC 3 cut(s) 799, 1232, 1312
SapI GCTCTTC 2 cut(s) 284, 521
SaqAI TTAA 4 cut(s) 729, 933, 1076, 1250
SatI GCNGC 8 cut(s) 72, 112, 521, 617, 767, 929, 1038, 1041
Sau96I GGNCC 4 cut(s) 73, 119, 140, 1355
ScaI AGTACT 1 cut(s) 1313
SchI GAGTC 6 cut(s) 241, 294, 518, 776, 883, 1451
ScrFI CCNGG 6 cut(s) 62, 673, 807, 898, 1239, 1494
SexAI ACCWGGT 1 cut(s) 1237
SfaNI GCATC 5 cut(s) 553, 859, 1108, 1216, 1461
SfcI CTRYAG 2 cut(s) 786, 1002
Sfr274I CTCGAG 1 cut(s) 194
SinI GGWCC 1 cut(s) 1355
SlaI CTCGAG 1 cut(s) 194
SmlI CTYRAG 3 cut(s) 194, 647, 1315
SmoI CTYRAG 3 cut(s) 194, 647, 1315
Sse9I AATT 3 cut(s) 759, 1281, 1480
SsiI CCGC 9 cut(s) 71, 109, 123, 234, 388, 451, 491, 928, 944
SspI AATATT 1 cut(s) 1267
SspMI CTAG 3 cut(s) 50, 1107, 1187
StyD4I CCNGG 6 cut(s) 60, 671, 805, 896, 1237, 1492
StyI CCWWGG 2 cut(s) 719, 1350
TaiI ACGT 4 cut(s) 351, 576, 961, 1432
TaqI TCGA 6 cut(s) 195, 267, 459, 470, 1417, 1445
TasI AATT 3 cut(s) 759, 1281, 1480
TatI WGTACW 2 cut(s) 1231, 1311
TauI GCSGC 2 cut(s) 74, 931
TfiI GAWTC 1 cut(s) 1300
Tru1I TTAA 4 cut(s) 729, 933, 1076, 1250
Tru9I TTAA 4 cut(s) 729, 933, 1076, 1250
TscAI CASTG 1 cut(s) 1228
TseFI GTSAC 1 cut(s) 1496
TseI GCWGC 6 cut(s) 111, 520, 616, 766, 1037, 1040
Tsp45I GTSAC 1 cut(s) 1496
TspDTI ATGAA 3 cut(s) 385, 701, 1315
TspGWI ACGGA 1 cut(s) 674
TspRI CASTG 1 cut(s) 1228
VpaK11BI GGWCC 1 cut(s) 1355
XagI CCTNNNNNAGG 1 cut(s) 1176
XceI RCATGY 1 cut(s) 361
XhoI CTCGAG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 3 cut(s) 50, 1107, 1187
ZrmI AGTACT 1 cut(s) 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.