Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Reverse (-)

5775586 .. 5777350

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17523.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAAGGTAAAGCCATCGCGACGTCTCTCGGTGGTGATCGTGTATTGATATTCCCGTGTTCTCCTCGCTCTTCCTTCGTTTTTACATCCCGGCTCTCTAGCCTGCCTCTAAAGCGTGCGTCTATCGGTGGTGCTGTCTCTTGTTCCGGCGTCAATGGCTTGACTCGGTGGAATTCCATTGTTTCGACTCGCCGACTCGTTCCTGTTCGTTCAATTAACTCGGAATCGGACTCGGACTCCGACTTCCCTCACGAGAATCAGCAGGGAAATCCAGGTTTGGGGAAATTTAAGGAATACCAAGAATGGGACTCATGGACGGCCAAGTTCTCCGGTGGAGCAAACATTCCGTTTCTCATGCTCCAATTGCCTCAGATCATCCTCAATACCCAGAATCTTTTGGCGGGAAACAATACCGCTCTTTCGGCTGTCCCATGGCTGGGAATGTTGACTGGTTTGTTAGGAAACCTTTCGTTGCTTTCTTATTTTGCTAAGAAGAGAGAAAAAGAAGCAGCTGTGGTGCAAACACTGGGAGTGGTCTCTACTCACATTGTGCTTGCACAGCTCACAATGGCTGAAGCAATGCCTATTCAGTATTTTGTTGCTACTTCAGCTGTTGTCACCATCGGTCTCATTGTGAACTGTTTGTACTATTTCGGTAAGCTTAACAATACACAAATGCAGGGCTATAAAAAATTTGATGCCGGGAAAAAAATACTAAAGAAGCCTAGAACGGACCATTGCAGTAAAAAGATCCAGCTTTGGAAGCTCGACTACACAATCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

28.62

Weight (kDa)

9.57

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	416
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	401, 414
AclWI	GGATC	1 cut(s)	745
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	3 cut(s)	172, 284, 692
AcuI	CTGAAG	2 cut(s)	591, 594
AcyI	GRCGYC	2 cut(s)	23, 150
AdeI	CACNNNGTG	1 cut(s)	550
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	4 cut(s)	278, 304, 436, 437
AgsI	TTSAA	1 cut(s)	213
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	6 cut(s)	512, 562, 611, 661, 757, 766
AluI	AGCT	6 cut(s)	512, 562, 611, 661, 757, 766
Alw26I	GTCTC	4 cut(s)	30, 142, 541, 632
AlwI	GGATC	1 cut(s)	745
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	3 cut(s)	172, 284, 692
Asp700I	GAANNNNTTC	1 cut(s)	466
AspS9I	GGNCC	1 cut(s)	733
AsuC2I	CCSGG	2 cut(s)	91, 703
AsuHPI	GGTGA	2 cut(s)	47, 610
AvaII	GGWCC	1 cut(s)	733
BarI	GAAGNNNNNNTAC	1 cut(s)	755
BauI	CACGAG	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	2 cut(s)	23, 629
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	2 cut(s)	91, 703
BcoDI	GTCTC	4 cut(s)	30, 142, 541, 632
BfaI	CTAG	2 cut(s)	99, 726
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	3 cut(s)	91, 273, 703
Bme18I	GGWCC	1 cut(s)	733
BmgT120I	GGNCC	1 cut(s)	733
BmrFI	CCNGG	3 cut(s)	91, 273, 703
BmrI	ACTGGG	1 cut(s)	536
BmsI	GCATC	1 cut(s)	688
BmuI	ACTGGG	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	91, 703
BsaHI	GRCGYC	2 cut(s)	23, 150
BsaI	GGTCTC	2 cut(s)	541, 632
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	4 cut(s)	278, 304, 436, 437
Bse1I	ACTGG	2 cut(s)	454, 531
Bse3DI	GCAATG	2 cut(s)	585, 736
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	86, 375
BseLI	CCNNNNNNNGG	4 cut(s)	278, 304, 436, 437
BseMI	GCAATG	2 cut(s)	585, 736
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	454, 531
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	521
BseYI	CCCAGC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	320
BsiSI	CCGG	4 cut(s)	91, 147, 330, 702
BslFI	GGGAC	2 cut(s)	320, 413
BslI	CCNNNNNNNGG	4 cut(s)	278, 304, 436, 437
BsmAI	GTCTC	4 cut(s)	30, 142, 541, 632
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	320, 413
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	2 cut(s)	541, 632
Bsp143I	GATC	3 cut(s)	37, 372, 750
Bsp19I	CCATGG	1 cut(s)	431
Bsp68I	TCGCGA	1 cut(s)	20
BspACI	CCGC	2 cut(s)	401, 414
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	20
BspPI	GGATC	1 cut(s)	745
BspQI	GCTCTTC	1 cut(s)	76
BspTNI	GGTCTC	2 cut(s)	541, 632
BsrBI	CCGCTC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	585, 736
BsrI	ACTGG	2 cut(s)	454, 531
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	37, 372, 750
BssNI	GRCGYC	2 cut(s)	23, 150
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	431
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	2 cut(s)	76, 488
BstACI	GRCGYC	2 cut(s)	23, 150
BstC8I	GCNNGC	3 cut(s)	104, 117, 555
BstDEI	CTNAG	2 cut(s)	369, 489
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	86, 375
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	40, 375, 753
BstMAI	GTCTC	4 cut(s)	30, 142, 541, 632
BstMBI	GATC	3 cut(s)	37, 372, 750
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 156, 364, 422, 559, 608, 763
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	3 cut(s)	89, 271, 701
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	750
BsuRI	GGCC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	86, 375
BtsIMutI	CAGTG	1 cut(s)	524
BtuMI	TCGCGA	1 cut(s)	20
Cac8I	GCNNGC	3 cut(s)	104, 117, 555
Cfr13I	GGNCC	1 cut(s)	733
CseI	GACGC	2 cut(s)	108, 139
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	3 cut(s)	312, 355, 432
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	2 cut(s)	369, 489
DpnI	GATC	3 cut(s)	39, 374, 752
DpnII	GATC	3 cut(s)	37, 372, 750
DraIII	CACNNNGTG	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	76, 488
EarI	CTCTTC	2 cut(s)	76, 488
Eco130I	CCWWGG	1 cut(s)	431
Eco31I	GGTCTC	2 cut(s)	541, 632
Eco47I	GGWCC	1 cut(s)	733
Eco57I	CTGAAG	2 cut(s)	591, 594
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	3 cut(s)	315, 358, 435
FaiI	YATR	4 cut(s)	313, 356, 433, 687
FaqI	GGGAC	2 cut(s)	320, 413
FatI	CATG	3 cut(s)	311, 354, 431
FauI	CCCGC	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	73, 362
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	99, 726
GluI	GCNGC	1 cut(s)	510
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	4 cut(s)	91, 147, 330, 702
HgaI	GACGC	2 cut(s)	108, 139
Hin1I	GRCGYC	2 cut(s)	23, 150
Hin1II	CATG	3 cut(s)	315, 358, 435
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	9 cut(s)	163, 187, 195, 224, 230, 236, 256, 308, 391
HpaII	CCGG	4 cut(s)	91, 147, 330, 702
HphI	GGTGA	2 cut(s)	47, 610
Hpy166II	GTNNAC	2 cut(s)	447, 637
Hpy188I	TCNGA	5 cut(s)	223, 229, 235, 241, 372
Hpy188III	TCNNGA	2 cut(s)	19, 251
Hpy8I	GTNNAC	2 cut(s)	447, 637
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	520, 557, 679, 741
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 156, 364, 422, 559, 608, 763
HpyF3I	CTNAG	2 cut(s)	369, 489
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	2 cut(s)	23, 150
Hsp92II	CATG	3 cut(s)	315, 358, 435
Kzo9I	GATC	3 cut(s)	37, 372, 750
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	335, 363
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	2 cut(s)	99, 726
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	3 cut(s)	39, 374, 752
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	3 cut(s)	37, 372, 750
MboII	GAAGA	2 cut(s)	63, 505
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	750
MluCI	AATT	5 cut(s)	172, 213, 284, 362, 692
MlyI	GAGTC	6 cut(s)	157, 181, 189, 224, 230, 302
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	75, 117, 258, 378, 389
MroXI	GAANNNNTTC	1 cut(s)	466
MseI	TTAA	3 cut(s)	216, 288, 663
MspA1I	CMGCKG	2 cut(s)	512, 611
MspI	CCGG	4 cut(s)	91, 147, 330, 702
MspR9I	CCNGG	3 cut(s)	91, 273, 703
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	7 cut(s)	112, 156, 364, 422, 559, 608, 763
NciI	CCSGG	2 cut(s)	91, 703
NcoI	CCATGG	1 cut(s)	431
NdeII	GATC	3 cut(s)	37, 372, 750
NlaIII	CATG	3 cut(s)	315, 358, 435
NmuCI	GTSAC	1 cut(s)	616
NruI	TCGCGA	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	224, 256, 391
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	6 cut(s)	157, 181, 189, 224, 230, 302
PpsI	GAGTC	6 cut(s)	157, 181, 189, 224, 230, 302
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	733
PsrI	GAACNNNNNNTAC	2 cut(s)	629, 661
PsuI	RGATCY	1 cut(s)	750
PvuII	CAGCTG	2 cut(s)	512, 611
RruI	TCGCGA	1 cut(s)	20
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	216, 288, 663
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	3 cut(s)	37, 372, 750
Sau96I	GGNCC	1 cut(s)	733
SchI	GAGTC	6 cut(s)	157, 181, 189, 224, 230, 302
ScrFI	CCNGG	3 cut(s)	91, 273, 703
SfaNI	GCATC	1 cut(s)	688
SinI	GGWCC	1 cut(s)	733
Sse9I	AATT	5 cut(s)	172, 213, 284, 362, 692
SsiI	CCGC	2 cut(s)	401, 414
SspMI	CTAG	2 cut(s)	99, 726
StyD4I	CCNGG	3 cut(s)	89, 271, 701
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	641
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	185, 768, 780
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	5 cut(s)	172, 213, 284, 362, 692
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	3 cut(s)	224, 256, 391
Tru1I	TTAA	3 cut(s)	216, 288, 663
Tru9I	TTAA	3 cut(s)	216, 288, 663
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	616
TspGWI	ACGGA	2 cut(s)	336, 746
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	733
XapI	RAATTY	3 cut(s)	172, 284, 692
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	2 cut(s)	99, 726
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.