Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Reverse (-)

27688956 .. 27689664

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28360.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGACTTATCGATCCCACGCGCACTTTTTATTCGTGATTTGATGTGGTTCACTGGTTCTACTTGGGCTTCTTTCTTTTATGGATATGGGAATATCGTGTGCTTGTATTGGTTCAAAAGTATCAGCAAGGAATTTTTCTTAGCAGCGACAACGGGTTTGTTTTTGTGGATAGGAATGGCTGTATGGAGAGATGCTGTTGTCAACGGATACGACTCACCCTTCACATCTTTGAAAGAGTTGGTTTCTGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

6.02

Isoelectric Point (pI)

19.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AclWI	GGATC	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	115, 232
AlwI	GGATC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	58
BseCI	ATCGAT	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	21
BshVI	ATCGAT	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	12
BspDI	ATCGAT	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	21
BspPI	GGATC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	11
BsuI	GTATCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	51
CfoI	GCGC	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	11
CviJI	RGCY	2 cut(s)	68, 179
CviKI_1	RGCY	2 cut(s)	68, 179
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
FaiI	YATR	3 cut(s)	81, 87, 184
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	51, 202
Hpy188III	TCNNGA	2 cut(s)	35, 246
Hpy8I	GTNNAC	2 cut(s)	51, 202
HpyAV	CCTTC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	2 cut(s)	39, 231
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	181
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	206
MvnI	CGCG	1 cut(s)	21
NdeII	GATC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	181
SgeI	CNNG	9 cut(s)	30, 32, 47, 66, 75, 109, 115, 139, 165
Sse9I	AATT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	131
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	58
XapI	RAATTY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.