Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8414683.1

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Forward (+)

48 .. 1340

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8414683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggccaagtgcttagtggtgccccattcctattcctattgctgctatcgctatgggaggaactctagcagcaccaggaacaggaaggcacctccgcaacaacatcagctcaattccttggccgccggcactctcttctccgtcgccacctcttcaaactcttacactcccctcaatttgcaacgccgccgaattctcagcgctctcgagtccgatgttcctcaccctcttcaccagggatcggcgaaattgaagagtagtgagagttttgagcaatgggattcgtggacagcaaagttctctggcgcatccaatattccatttctgctgctgcaaatgccgcagatcatcctgaatgctcaaaatcttatggctggaaataaagctgctcttttggcagtcccttggctgggaatgtttactggtttgattggaaacctttcgctgctttcatattttgcaaagaagagggagaaagaggcgattgtggtgcaaacattgggtttcttccccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.08

Weight (kDa)

9.92

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 88
AciI	CCGC	4 cut(s)	95, 123, 187, 341
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	2 cut(s)	3, 120
AcsI	RAATTY	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	202
AfiI	CCNNNNNNNGG	4 cut(s)	81, 241, 409, 410
AgsI	TTSAA	2 cut(s)	156, 253
AjnI	CCWGG	2 cut(s)	74, 234
AluBI	AGCT	2 cut(s)	109, 386
AluI	AGCT	2 cut(s)	109, 386
AlwI	GGATC	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	206
Aor51HI	AGCGCT	1 cut(s)	202
AoxI	GGCC	2 cut(s)	3, 120
ApeKI	GCWGC	6 cut(s)	42, 69, 328, 331, 386, 445
ApoI	RAATTY	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	439
AspLEI	GCGC	2 cut(s)	203, 308
AsuHPI	GGTGA	2 cut(s)	215, 224
AvaI	CYCGRG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	19, 88
BbvI	GCAGC	6 cut(s)	29, 81, 315, 318, 373, 432
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	2 cut(s)	76, 236
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	9 cut(s)	43, 70, 123, 187, 329, 332, 341, 387, 446
BlsI	GCNGC	9 cut(s)	44, 71, 124, 188, 330, 333, 342, 388, 447
Bme1390I	CCNGG	2 cut(s)	76, 236
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	21, 90
BmrFI	CCNGG	2 cut(s)	76, 236
BmsI	GCATC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	117, 235, 404
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 241, 409, 410
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	76, 236
BseDI	CCNNGG	3 cut(s)	117, 235, 404
BseGI	GGATG	2 cut(s)	308, 348
BseLI	CCNNNNNNNGG	4 cut(s)	81, 241, 409, 410
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	6 cut(s)	29, 81, 315, 318, 373, 432
BseYI	CCCAGC	1 cut(s)	409
BshFI	GGCC	2 cut(s)	5, 122
BshNI	GGYRCC	2 cut(s)	19, 88
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	4 cut(s)	81, 241, 409, 410
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	5, 122
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	239, 345
BspACI	CCGC	4 cut(s)	95, 123, 187, 341
BspANI	GGCC	2 cut(s)	5, 122
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	21, 90
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	2 cut(s)	19, 88
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	117, 235, 404
BssMI	GATC	2 cut(s)	239, 345
BssT1I	CCWWGG	2 cut(s)	117, 404
Bst2UI	CCWGG	2 cut(s)	76, 236
Bst6I	CTCTTC	5 cut(s)	140, 157, 234, 248, 461
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	13, 197
BstF5I	GGATG	2 cut(s)	308, 348
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	203, 308
BstKTI	GATC	2 cut(s)	242, 348
BstMBI	GATC	2 cut(s)	239, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 337, 340, 395
BstNI	CCWGG	2 cut(s)	76, 236
BstSCI	CCNGG	2 cut(s)	74, 234
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	6 cut(s)	29, 81, 315, 318, 373, 432
BsuRI	GGCC	2 cut(s)	5, 122
BtsCI	GGATG	2 cut(s)	308, 348
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	2 cut(s)	203, 308
Cfr10I	RCCGGY	1 cut(s)	125
CviJI	RGCY	6 cut(s)	5, 109, 122, 374, 386, 409
CviKI_1	RGCY	6 cut(s)	5, 109, 122, 374, 386, 409
DdeI	CTNAG	2 cut(s)	13, 197
DpnI	GATC	2 cut(s)	241, 347
DpnII	GATC	2 cut(s)	239, 345
EaeI	YGGCCR	2 cut(s)	3, 120
Eam1104I	CTCTTC	5 cut(s)	140, 157, 234, 248, 461
EarI	CTCTTC	5 cut(s)	140, 157, 234, 248, 461
Eco130I	CCWWGG	2 cut(s)	117, 404
Eco47III	AGCGCT	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	74, 234
EcoT14I	CCWWGG	2 cut(s)	117, 404
ErhI	CCWWGG	2 cut(s)	117, 404
FaiI	YATR	3 cut(s)	54, 371, 454
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	386
Fnu4HI	GCNGC	9 cut(s)	43, 70, 123, 187, 329, 332, 341, 387, 446
FokI	GGATG	2 cut(s)	295, 335
Fsp4HI	GCNGC	9 cut(s)	43, 70, 123, 187, 329, 332, 341, 387, 446
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	202, 307
GluI	GCNGC	9 cut(s)	43, 70, 123, 187, 329, 332, 341, 387, 446
GsaI	CCCAGC	1 cut(s)	413
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	5, 122
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	2 cut(s)	203, 308
Hin6I	GCGC	2 cut(s)	201, 306
HinP1I	GCGC	2 cut(s)	201, 306
HinfI	GANTC	2 cut(s)	209, 281
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	215, 224
Hpy166II	GTNNAC	2 cut(s)	288, 420
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	206, 352
Hpy8I	GTNNAC	2 cut(s)	288, 420
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	4 cut(s)	181, 334, 461, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 337, 340, 395
HpyF3I	CTNAG	2 cut(s)	13, 197
HspAI	GCGC	2 cut(s)	201, 306
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	239, 345
Lsp1109I	GCAGC	6 cut(s)	29, 81, 315, 318, 373, 432
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	66
MalI	GATC	2 cut(s)	241, 347
MboI	GATC	2 cut(s)	239, 345
MboII	GAAGA	6 cut(s)	127, 144, 221, 265, 478, 499
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	112, 175, 192, 248
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	8 cut(s)	51, 102, 160, 182, 231, 237, 462, 472
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	76, 236
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	2 cut(s)	76, 236
MwoI	GCNNNNNNNGC	4 cut(s)	48, 337, 340, 395
NaeI	GCCGGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	239, 345
NgoMIV	GCCGGC	1 cut(s)	125
NlaIV	GGNNCC	2 cut(s)	21, 90
PaeR7I	CTCGAG	1 cut(s)	206
PctI	GAATGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	9 cut(s)	44, 71, 124, 188, 330, 333, 342, 388, 447
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	74, 234
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	2 cut(s)	74, 234
PspN4I	GGNNCC	2 cut(s)	21, 90
SatI	GCNGC	9 cut(s)	43, 70, 123, 187, 329, 332, 341, 387, 446
Sau3AI	GATC	2 cut(s)	239, 345
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	76, 236
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	5 cut(s)	94, 111, 152, 388, 441
SfaNI	GCATC	1 cut(s)	317
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	112, 175, 192, 248
SsiI	CCGC	4 cut(s)	95, 123, 187, 341
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	74, 234
StyI	CCWWGG	2 cut(s)	117, 404
TaqI	TCGA	1 cut(s)	207
TasI	AATT	4 cut(s)	112, 175, 192, 248
TauI	GCSGC	3 cut(s)	125, 189, 343
TfiI	GAWTC	1 cut(s)	281
TseI	GCWGC	6 cut(s)	42, 69, 328, 331, 386, 445
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	1 cut(s)	130
XapI	RAATTY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.