Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Forward (+)

68577339 .. 68581262

Gene Structure 3924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG474900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCCAAGTGCTTAGTGGTGCCCCATTCCTATTCCTATTCCTATTGCTGCTATAGGAGGAACTCTAGCAGCACCAGGAACAGGAAGGCACCTCCGCAACAACATCAGCTCAATTCCTTGGCCGCCGGCACTCTCTTCTCCGTCACCACCTCTTCAAACTCTTACAGTACTCCCCTCAATTTGCAACGCCGCCGAATTCTCAGCGCTCTCGAGTCCGATGTTCCTCATCCTCTTCACCAGGGATCGGCGAAATTGAAGAGTAGTGAGAGTTTTGAGCAATGGGATTCATGGACAGCAAAGTTCTCTGGCGCATCCAATATTCCATTTCTGCTGCTGCAAATGCCTCAGATCATCCTGAATGCTCAAAATCTTATGGCTGGAAATAAAGCTGCTCTTTTGGCAGTCCCTTGGCTGGGAATGTTTACTGGTTTGATTGGAAACCTTTCGCTGCTTTCGTATTTTGCAAAGAAGAGGGAGAAAGAGGCGATTGTGGTGCAAACATTGGGTGTAGTTTCCTTGTATACTGTATTTGCACAGCTCTCCTTGGCAGAAGCAATGCCTCTGCCATACTTTGTGATTACCTCCATCGTCGTGGCAACCGGTCTTATTTTGAATTTTTTGAATTACTTTAATTTCCTCAATCCTGGAGTCTGGCTCTTCTGGGAAGATTTTATTACTGTTGGTGGGCTGTCAGTTCTTCCCCAAATTATGTGGTCTACATTTGTTCCATATATACCCAGCAGTATCGTGCCTGGAGCATTGGCTTTTGTTTTAGCTGTGGCAGCTGTAATTATGGCTCGAATGGGGAAACTCTCTTCAGAAGGAACCAAATTTGTTAGATCAATATCTGGATGGACAGCTACACTCCTCTTCATGTGGATGCCTGTTTCCCAAATGTGGACAAATTTCCTAAATCCTGACAACATCAAAGGCTTATCAGCTGTCTCAATGTTGCTTGCAATGATTGGAAATGGACTTATGATCCCTCGTGCTCTTTTTATTCGTGATTTTATGTGGTTCACAGGTTCTTCATGGGCTTCTTTCTTTTATGGATATGGGAACATTGTGGCCTTATATTGGTATGGTGTTCCTGATGTATGGTTCTTCATTGGTAGCATTTTGTTCCTAATGTCTTTTTGTTGGCGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

383

Amino Acids

42.82

Weight (kDa)

9.53

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 88
AccI	GTMKAC	2 cut(s)	521, 716
AciI	CCGC	3 cut(s)	95, 123, 190
AclWI	GGATC	2 cut(s)	250, 976
AcoI	YGGCCR	2 cut(s)	3, 120
AcsI	RAATTY	4 cut(s)	195, 613, 830, 904
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	1 cut(s)	169
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	6 cut(s)	81, 244, 412, 413, 897, 1077
AgeI	ACCGGT	1 cut(s)	599
AgsI	TTSAA	4 cut(s)	156, 256, 613, 622
AjnI	CCWGG	4 cut(s)	74, 237, 643, 751
AluBI	AGCT	7 cut(s)	109, 389, 538, 776, 785, 860, 941
AluI	AGCT	7 cut(s)	109, 389, 538, 776, 785, 860, 941
Alw21I	GWGCWC	1 cut(s)	994
Alw26I	GTCTC	1 cut(s)	949
AlwI	GGATC	2 cut(s)	250, 976
Ama87I	CYCGRG	1 cut(s)	209
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	3 cut(s)	3, 120, 1068
ApeKI	GCWGC	7 cut(s)	48, 69, 331, 334, 389, 448, 782
ApoI	RAATTY	4 cut(s)	195, 613, 830, 904
AsiGI	ACCGGT	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	206, 311
AsuHPI	GGTGA	2 cut(s)	136, 227
AvaI	CYCGRG	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	19, 88
BauI	CACGAG	1 cut(s)	987
Bbv12I	GWGCWC	1 cut(s)	994
BbvI	GCAGC	7 cut(s)	35, 81, 318, 321, 376, 435, 794
BccI	CCATC	2 cut(s)	593, 846
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	4 cut(s)	76, 239, 645, 753
BcoDI	GTCTC	1 cut(s)	949
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	9 cut(s)	49, 70, 123, 190, 332, 335, 390, 449, 783
BlsI	GCNGC	9 cut(s)	50, 71, 124, 191, 333, 336, 391, 450, 784
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	4 cut(s)	76, 239, 645, 753
BmeT110I	CYCGRG	1 cut(s)	209
BmiI	GGNNCC	3 cut(s)	21, 90, 826
BmrFI	CCNGG	4 cut(s)	76, 239, 645, 753
BmsI	GCATC	2 cut(s)	320, 870
BplI	GAGNNNNNCTC	2 cut(s)	639, 671
BpmI	CTGGAG	2 cut(s)	666, 774
BsaBI	GATNNNNATC	1 cut(s)	844
BsaJI	CCNNGG	4 cut(s)	117, 238, 407, 543
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	6 cut(s)	81, 244, 412, 413, 897, 1077
Bse118I	RCCGGY	2 cut(s)	125, 599
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	3 cut(s)	284, 561, 966
Bse8I	GATNNNNATC	1 cut(s)	844
BseBI	CCWGG	4 cut(s)	76, 239, 645, 753
BseDI	CCNNGG	4 cut(s)	117, 238, 407, 543
BseGI	GGATG	5 cut(s)	226, 311, 351, 857, 885
BseJI	GATNNNNATC	1 cut(s)	844
BseLI	CCNNNNNNNGG	6 cut(s)	81, 244, 412, 413, 897, 1077
BseMI	GCAATG	3 cut(s)	284, 561, 966
BseMII	CTCAG	2 cut(s)	214, 359
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	7 cut(s)	35, 81, 318, 321, 376, 435, 794
BseYI	CCCAGC	2 cut(s)	412, 737
BshFI	GGCC	3 cut(s)	5, 122, 1070
BshNI	GGYRCC	2 cut(s)	19, 88
BshTI	ACCGGT	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	994
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	126, 600
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	6 cut(s)	81, 244, 412, 413, 897, 1077
BsmAI	GTCTC	1 cut(s)	949
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	5, 122, 1070
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	24, 994
Bsp143I	GATC	4 cut(s)	242, 348, 839, 981
BspACI	CCGC	3 cut(s)	95, 123, 190
BspANI	GGCC	3 cut(s)	5, 122, 1070
BspCNI	CTCAG	2 cut(s)	213, 358
BspLI	GGNNCC	3 cut(s)	21, 90, 826
BspPI	GGATC	2 cut(s)	250, 976
BspQI	GCTCTTC	1 cut(s)	662
BspT107I	GGYRCC	2 cut(s)	19, 88
BsrDI	GCAATG	3 cut(s)	284, 561, 966
BsrFI	RCCGGY	2 cut(s)	125, 599
BsrI	ACTGG	1 cut(s)	430
BssAI	RCCGGY	2 cut(s)	125, 599
BssECI	CCNNGG	4 cut(s)	117, 238, 407, 543
BssMI	GATC	4 cut(s)	242, 348, 839, 981
BssNAI	GTATAC	1 cut(s)	522
BssSI	CACGAG	1 cut(s)	987
BssT1I	CCWWGG	3 cut(s)	117, 407, 543
Bst1107I	GTATAC	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	987
Bst2UI	CCWGG	4 cut(s)	76, 239, 645, 753
Bst4CI	ACNGT	3 cut(s)	167, 526, 679
Bst6I	CTCTTC	8 cut(s)	140, 157, 237, 251, 464, 662, 820, 875
BstC8I	GCNNGC	2 cut(s)	127, 957
BstDEI	CTNAG	3 cut(s)	13, 200, 345
BstF5I	GGATG	5 cut(s)	226, 311, 351, 857, 885
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	206, 311
BstKTI	GATC	4 cut(s)	245, 351, 842, 984
BstMAI	GTCTC	1 cut(s)	949
BstMBI	GATC	4 cut(s)	242, 348, 839, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 398, 782
BstNI	CCWGG	4 cut(s)	76, 239, 645, 753
BstSCI	CCNGG	4 cut(s)	74, 237, 643, 751
BstSFI	CTRYAG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	7 cut(s)	35, 81, 318, 321, 376, 435, 794
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstZ17I	GTATAC	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	5, 122, 1070
BtsCI	GGATG	5 cut(s)	226, 311, 351, 857, 885
Cac8I	GCNNGC	2 cut(s)	127, 957
CfoI	GCGC	2 cut(s)	206, 311
Cfr10I	RCCGGY	2 cut(s)	125, 599
Csp6I	GTAC	1 cut(s)	168
CspAI	ACCGGT	1 cut(s)	599
CspCI	CAANNNNNGTGG	2 cut(s)	692, 727
CviAII	CATG	3 cut(s)	288, 874, 1032
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	3 cut(s)	13, 200, 345
DpnI	GATC	4 cut(s)	244, 350, 841, 983
DpnII	GATC	4 cut(s)	242, 348, 839, 981
EaeI	YGGCCR	2 cut(s)	3, 120
Eam1104I	CTCTTC	8 cut(s)	140, 157, 237, 251, 464, 662, 820, 875
EarI	CTCTTC	8 cut(s)	140, 157, 237, 251, 464, 662, 820, 875
Eco130I	CCWWGG	3 cut(s)	117, 407, 543
Eco47III	AGCGCT	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	4 cut(s)	74, 237, 643, 751
EcoT14I	CCWWGG	3 cut(s)	117, 407, 543
ErhI	CCWWGG	3 cut(s)	117, 407, 543
FaeI	CATG	3 cut(s)	291, 877, 1035
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	287, 873, 1031
FblI	GTMKAC	2 cut(s)	521, 716
Fnu4HI	GCNGC	9 cut(s)	49, 70, 123, 190, 332, 335, 390, 449, 783
FokI	GGATG	5 cut(s)	213, 298, 338, 864, 892
Fsp4HI	GCNGC	9 cut(s)	49, 70, 123, 190, 332, 335, 390, 449, 783
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	205, 310
GluI	GCNGC	9 cut(s)	49, 70, 123, 190, 332, 335, 390, 449, 783
GsaI	CCCAGC	2 cut(s)	416, 741
GsuI	CTGGAG	2 cut(s)	666, 774
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	5, 122, 1070
HapII	CCGG	2 cut(s)	126, 600
HhaI	GCGC	2 cut(s)	206, 311
Hin1II	CATG	3 cut(s)	291, 877, 1035
Hin6I	GCGC	2 cut(s)	204, 309
HinP1I	GCGC	2 cut(s)	204, 309
HinfI	GANTC	3 cut(s)	212, 284, 648
HpaII	CCGG	2 cut(s)	126, 600
HphI	GGTGA	2 cut(s)	136, 227
Hpy166II	GTNNAC	5 cut(s)	423, 522, 717, 900, 1020
Hpy188I	TCNGA	3 cut(s)	217, 348, 820
Hpy188III	TCNNGA	6 cut(s)	209, 355, 849, 917, 1004, 1091
Hpy8I	GTNNAC	5 cut(s)	423, 522, 717, 900, 1020
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	79, 815
HpyCH4III	ACNGT	3 cut(s)	167, 526, 679
HpyCH4V	TGCA	6 cut(s)	184, 337, 464, 496, 533, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 398, 782
HpyF3I	CTNAG	3 cut(s)	13, 200, 345
Hsp92II	CATG	3 cut(s)	291, 877, 1035
HspAI	GCGC	2 cut(s)	204, 309
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	242, 348, 839, 981
LguI	GCTCTTC	1 cut(s)	662
LmnI	GCTCC	1 cut(s)	755
Lsp1109I	GCAGC	7 cut(s)	35, 81, 318, 321, 376, 435, 794
LweI	GCATC	2 cut(s)	320, 870
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	4 cut(s)	244, 350, 841, 983
MboI	GATC	4 cut(s)	242, 348, 839, 981
MhlI	GDGCHC	2 cut(s)	24, 994
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	221, 657
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	630, 1150
MslI	CAYNNNNRTG	2 cut(s)	590, 878
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	785, 941
MspI	CCGG	2 cut(s)	126, 600
MspR9I	CCNGG	4 cut(s)	76, 239, 645, 753
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	4 cut(s)	76, 239, 645, 753
MwoI	GCNNNNNNNGC	3 cut(s)	340, 398, 782
NaeI	GCCGGC	1 cut(s)	127
NdeII	GATC	4 cut(s)	242, 348, 839, 981
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	3 cut(s)	291, 877, 1035
NlaIV	GGNNCC	3 cut(s)	21, 90, 826
NmuCI	GTSAC	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	662
PcsI	WCGNNNNNNNCGW	1 cut(s)	452
PctI	GAATGC	1 cut(s)	364
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	643
PinAI	ACCGGT	1 cut(s)	599
PkrI	GCNGC	9 cut(s)	50, 71, 124, 191, 333, 336, 391, 450, 784
PleI	GAGTC	2 cut(s)	220, 656
PpsI	GAGTC	2 cut(s)	220, 656
Psp6I	CCWGG	4 cut(s)	74, 237, 643, 751
PspFI	CCCAGC	2 cut(s)	412, 737
PspGI	CCWGG	4 cut(s)	74, 237, 643, 751
PspN4I	GGNNCC	3 cut(s)	21, 90, 826
PvuII	CAGCTG	2 cut(s)	785, 941
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	2 cut(s)	590, 878
SapI	GCTCTTC	1 cut(s)	662
SaqAI	TTAA	2 cut(s)	630, 1150
SatI	GCNGC	9 cut(s)	49, 70, 123, 190, 332, 335, 390, 449, 783
Sau3AI	GATC	4 cut(s)	242, 348, 839, 981
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	2 cut(s)	221, 657
ScrFI	CCNGG	4 cut(s)	76, 239, 645, 753
SduI	GDGCHC	2 cut(s)	24, 994
SfaNI	GCATC	2 cut(s)	320, 870
SfcI	CTRYAG	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	590, 878
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SsiI	CCGC	3 cut(s)	95, 123, 190
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	4 cut(s)	74, 237, 643, 751
StyI	CCWWGG	3 cut(s)	117, 407, 543
TaaI	ACNGT	3 cut(s)	167, 526, 679
TaqI	TCGA	2 cut(s)	210, 799
TatI	WGTACW	1 cut(s)	167
TauI	GCSGC	2 cut(s)	125, 192
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	2 cut(s)	630, 1150
Tru9I	TTAA	2 cut(s)	630, 1150
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	7 cut(s)	48, 69, 331, 334, 389, 448, 782
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	276, 862, 1020, 1096
TspGWI	ACGGA	1 cut(s)	130
XapI	RAATTY	4 cut(s)	195, 613, 830, 904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	209
XmiI	GTMKAC	2 cut(s)	521, 716
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.