Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008803

Physical Location & Seq

Genomic Coordinates Forward (+)

30298060 .. 30302376

Gene Structure 4317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G329800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCCAAGTGTCTCGTGGTGCCCTATTCCTATTCCTCTACTGGAACTAGAAGTAGAACAAGAAGTAGCGGTAGCGCCAGCACTAGCAAGCCACCTGGACTGCAAGTACAATTGCAACATCATCATCTCAAATATTCCTTGATCCAACAAAACTCTCTATCAGACTCCGCCCAATGCTACTACAACACCCACACCTTGCTTCGCCGCCGAATTCTCTGCGCTCTCGACTCTGACGTCCCTCACCCTCTTCATCATCAGGTTCAGAGCAATAAAAGTTTCGAGCAATGGGACTCCTGGACAGCAAAATTCTCTGGTGCATCAAATATCCCATTTCTGTTACTGCAAATGCCTCAGATCATACTCAATGCCCAAAATCTTCTGGCAGGAAATAAAGCTGCACTTTTGGCAGTCCCATGGCTGGGAATGTTTACTGGTTTGCTTGGAAACCTTTCACTGCTTTCATATTTTGCAAAGAAGAGAGAGAAGGAGGCGATTGTGGTGCAGACATTGGGCGTAGTTTCCTTATATGCGGTTTTTGCTCAACTTTCCATGGCAGAAGCGATGCCTCTACCTTACTTTGTGATCACCTCTGTGGTTGTGGCAACTGGTCTTGTTTTGAATTTCTTGAATTACTTTGGTCTGCTTAATGCTGGAATCTGGCGCTTCTGGGAAGATTTTATTACTGTTGGCGGGCTATCAGTTCTTCCCCAAATTATGTGGTCTACGTTTGTTCCGTATATACCCAACAGTATCTTGCCTGGAGTATTTGCTTTTCTTGTTGCTCTGGTGGCTGTTATTATGGCGCGATTGGGGAAACTCTCTGCAAAAGGCATCAAATTTGTTGGAGCTATATCTGGATGGACAGCTACACTTCTTTTCATGTGGATGCCAATTTCGCAAATGTGGACAAATTTCCTAAATCCTGACAACATCAAAGGTTTATCAGCTTTCTCGATGTTGCTTGCAATGATTGGAAATGGACTTATGATCCCACGTGCCCTTTTTATTCGTGATTTTATGTGGTTCACTGGTTCTACCTGGGCTTCTTTGTTTTATGGATATGGGAATATCGTGTGCTTGTATTGGTTCAACAGTATCAGCAAGGAATTTTTCTTAGCAGCAACAGCTGGTTTGATTTTGTGGATAGGAATGACTCTATGGAGAGATGCTGATGTCTATGGATACAACTCACCTTTCACATCTTTGAAAGAGTTAGTTTCTGGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000272 GO:0003674 GO:0005215 GO:0005363 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006810 GO:0008150 GO:0008152 GO:0008643 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009706 GO:0009941 GO:0009987 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015768 GO:0015772 GO:0016020 GO:0016052 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0042170 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

45.46

Weight (kDa)

9.48

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17520 AT5G17520 AT5G17523
fragaria_vesca	FvH4_7g34281
malus_domestica	MD01G1240200.v1.1 MD07G1311300.v1.1
prunus_persica	Prupe.2G329800_v2.0.a1 Prupe.2G329800_v2.0.a1
pyrus_communis	pycom01g24690 pycom01g24700 pycom07g28360
rosa_chinensis	RchiOBHm_Chr1g0384641
rosa_laevigata	RLG00000026024
rosa_multiflora	Rmu_co8414683.1_g000001 Rmu_sc0012136.1_g000026
rosa_roxburghii	Rroxscaffold_4G00276500
rosa_rugosa	Rorug01G0450300 Rorug01G0450400
rosa_samantha	Rh1AG474900 Rh1BG433100 Rh1CG446200 Rh1DG465600
rosa_wichuraiana	Rw1G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AatII	GACGTC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	722
AccII	CGCG	1 cut(s)	805
AciI	CCGC	5 cut(s)	69, 168, 205, 530, 690
AclWI	GGATC	2 cut(s)	136, 982
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	6 cut(s)	210, 305, 619, 836, 910, 1106
AcvI	CACGTG	1 cut(s)	995
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	418, 419
AgsI	TTSAA	4 cut(s)	619, 628, 1090, 1207
AjnI	CCWGG	4 cut(s)	94, 293, 757, 1037
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	5 cut(s)	395, 848, 866, 947, 1127
AluI	AGCT	5 cut(s)	395, 848, 866, 947, 1127
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	136, 982
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	395, 1118
ApoI	RAATTY	6 cut(s)	210, 305, 619, 836, 910, 1106
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	4 cut(s)	77, 221, 663, 805
AspS9I	GGNCC	1 cut(s)	1224
AsuHPI	GGTGA	3 cut(s)	233, 577, 1182
AvaII	GGWCC	1 cut(s)	1224
BaeGI	GKGCMC	2 cut(s)	24, 1000
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	995
BbvI	GCAGC	2 cut(s)	382, 1130
BccI	CCATC	1 cut(s)	852
BcgI	CGANNNNNNTGC	4 cut(s)	198, 232, 481, 515
BciT130I	CCWGG	4 cut(s)	96, 295, 759, 1039
BciVI	GTATCC	1 cut(s)	1175
BclI	TGATCA	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	48, 84
BfoI	RGCGCY	2 cut(s)	78, 664
BfuI	GTATCC	1 cut(s)	1175
BisI	GCNGC	3 cut(s)	205, 396, 1119
BlsI	GCNGC	3 cut(s)	206, 397, 1120
Bme1390I	CCNGG	4 cut(s)	96, 295, 759, 1039
Bme18I	GGWCC	1 cut(s)	1224
BmgT120I	GGNCC	1 cut(s)	1224
BmiI	GGNNCC	2 cut(s)	21, 1225
BmrFI	CCNGG	4 cut(s)	96, 295, 759, 1039
BmsI	GCATC	5 cut(s)	326, 552, 840, 876, 1156
BpmI	CTGGAG	1 cut(s)	780
BsaAI	YACGTR	1 cut(s)	995
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	413, 549, 1038
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 419
Bse1I	ACTGG	4 cut(s)	46, 436, 610, 1033
Bse3DI	GCAATG	2 cut(s)	290, 972
BseBI	CCWGG	4 cut(s)	96, 295, 759, 1039
BseDI	CCNNGG	3 cut(s)	413, 549, 1038
BseGI	GGATG	2 cut(s)	863, 891
BseLI	CCNNNNNNNGG	2 cut(s)	418, 419
BseMI	GCAATG	2 cut(s)	290, 972
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	4 cut(s)	46, 436, 610, 1033
BseSI	GKGCMC	2 cut(s)	24, 1000
BseXI	GCAGC	2 cut(s)	382, 1130
BseYI	CCCAGC	1 cut(s)	418
BsgI	GTGCAG	2 cut(s)	381, 521
Bsh1236I	CGCG	1 cut(s)	805
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	19
BslFI	GGGAC	3 cut(s)	221, 302, 395
BslI	CCNNNNNNNGG	2 cut(s)	418, 419
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	3 cut(s)	221, 302, 395
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	24, 1000
Bsp143I	GATC	4 cut(s)	141, 354, 582, 987
Bsp19I	CCATGG	2 cut(s)	413, 549
BspACI	CCGC	5 cut(s)	69, 168, 205, 530, 690
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	21, 1225
BspPI	GGATC	2 cut(s)	136, 982
BspT107I	GGYRCC	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	290, 972
BsrI	ACTGG	4 cut(s)	46, 436, 610, 1033
BssECI	CCNNGG	3 cut(s)	413, 549, 1038
BssMI	GATC	4 cut(s)	141, 354, 582, 987
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	413, 549
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	4 cut(s)	96, 295, 759, 1039
Bst4CI	ACNGT	3 cut(s)	685, 749, 1094
Bst6I	CTCTTC	2 cut(s)	252, 470
BstACI	GRCGYC	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	995
BstC8I	GCNNGC	4 cut(s)	79, 89, 692, 963
BstDEI	CTNAG	2 cut(s)	351, 1114
BstDSI	CCRYGG	2 cut(s)	413, 549
BstF5I	GGATG	2 cut(s)	863, 891
BstFNI	CGCG	1 cut(s)	805
BstH2I	RGCGCY	2 cut(s)	78, 664
BstHHI	GCGC	4 cut(s)	77, 221, 663, 805
BstKTI	GATC	4 cut(s)	144, 357, 585, 990
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	141, 354, 582, 987
BstMWI	GCNNNNNNNGC	5 cut(s)	404, 536, 788, 895, 1124
BstNI	CCWGG	4 cut(s)	96, 295, 759, 1039
BstSCI	CCNGG	4 cut(s)	94, 293, 757, 1037
BstSLI	GKGCMC	2 cut(s)	24, 1000
BstUI	CGCG	1 cut(s)	805
BstV1I	GCAGC	2 cut(s)	382, 1130
BsuI	GTATCC	1 cut(s)	1175
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	413, 549
BtgZI	GCGATG	1 cut(s)	575
BtsCI	GGATG	2 cut(s)	863, 891
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	452, 1026
Cac8I	GCNNGC	4 cut(s)	79, 89, 692, 963
CfoI	GCGC	4 cut(s)	77, 221, 663, 805
Cfr13I	GGNCC	1 cut(s)	1224
Csp6I	GTAC	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	698, 733
CviAII	CATG	3 cut(s)	414, 550, 880
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	351, 1114
DpnI	GATC	4 cut(s)	143, 356, 584, 989
DpnII	GATC	4 cut(s)	141, 354, 582, 987
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	252, 470
EarI	CTCTTC	2 cut(s)	252, 470
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	413, 549
Eco47I	GGWCC	1 cut(s)	1224
Eco72I	CACGTG	1 cut(s)	995
EcoO109I	RGGNCCY	1 cut(s)	1224
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	4 cut(s)	94, 293, 757, 1037
EcoT14I	CCWWGG	2 cut(s)	413, 549
ErhI	CCWWGG	2 cut(s)	413, 549
FaeI	CATG	3 cut(s)	417, 553, 883
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	3 cut(s)	221, 302, 395
FatI	CATG	3 cut(s)	413, 549, 879
FauI	CCCGC	1 cut(s)	683
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	722
Fnu4HI	GCNGC	3 cut(s)	205, 396, 1119
FokI	GGATG	2 cut(s)	870, 898
Fsp4HI	GCNGC	3 cut(s)	205, 396, 1119
FspBI	CTAG	2 cut(s)	48, 84
GlaI	GCGC	4 cut(s)	76, 220, 662, 804
GluI	GCNGC	3 cut(s)	205, 396, 1119
GsaI	CCCAGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	780
HaeII	RGCGCY	2 cut(s)	78, 664
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	4 cut(s)	77, 221, 663, 805
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	417, 553, 883
Hin6I	GCGC	4 cut(s)	75, 219, 661, 803
HinP1I	GCGC	4 cut(s)	75, 219, 661, 803
HinfI	GANTC	5 cut(s)	164, 227, 290, 654, 1153
HphI	GGTGA	3 cut(s)	233, 577, 1182
Hpy166II	GTNNAC	4 cut(s)	429, 723, 906, 1026
Hpy188I	TCNGA	4 cut(s)	163, 232, 264, 354
Hpy188III	TCNNGA	6 cut(s)	224, 625, 855, 923, 952, 1010
Hpy8I	GTNNAC	4 cut(s)	429, 723, 906, 1026
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	3 cut(s)	685, 749, 1094
HpyCH4IV	ACGT	3 cut(s)	234, 725, 994
HpyCH4V	TGCA	9 cut(s)	103, 115, 317, 343, 398, 470, 502, 824, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	404, 536, 788, 895, 1124
HpyF3I	CTNAG	2 cut(s)	351, 1114
HpySE526I	ACGT	3 cut(s)	234, 725, 994
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	417, 553, 883
HspAI	GCGC	4 cut(s)	75, 219, 661, 803
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	141, 354, 582, 987
LmnI	GCTCC	1 cut(s)	845
Lsp1109I	GCAGC	2 cut(s)	382, 1130
LweI	GCATC	5 cut(s)	326, 552, 840, 876, 1156
MaeI	CTAG	2 cut(s)	48, 84
MaeII	ACGT	3 cut(s)	234, 725, 994
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	4 cut(s)	143, 356, 584, 989
MboI	GATC	4 cut(s)	141, 354, 582, 987
MboII	GAAGA	5 cut(s)	239, 368, 487, 683, 695
MfeI	CAATTG	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	24, 1000
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	158, 221, 284, 1147
MmeI	TCCRAC	2 cut(s)	169, 823
MnlI	CCTC	7 cut(s)	46, 249, 255, 360, 481, 576, 598
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	2 cut(s)	590, 884
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1127
MspR9I	CCNGG	4 cut(s)	96, 295, 759, 1039
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	4 cut(s)	96, 295, 759, 1039
MvnI	CGCG	1 cut(s)	805
MwoI	GCNNNNNNNGC	5 cut(s)	404, 536, 788, 895, 1124
NcoI	CCATGG	2 cut(s)	413, 549
NdeII	GATC	4 cut(s)	141, 354, 582, 987
NlaIII	CATG	3 cut(s)	417, 553, 883
NlaIV	GGNNCC	2 cut(s)	21, 1225
OliI	CACNNNNGTG	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 731
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	654
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	206, 397, 1120
PleI	GAGTC	4 cut(s)	158, 221, 284, 1147
PmaCI	CACGTG	1 cut(s)	995
PmlI	CACGTG	1 cut(s)	995
PpsI	GAGTC	4 cut(s)	158, 221, 284, 1147
Ppu21I	YACGTR	1 cut(s)	995
PpuMI	RGGWCCY	1 cut(s)	1224
Psp5II	RGGWCCY	1 cut(s)	1224
Psp6I	CCWGG	4 cut(s)	94, 293, 757, 1037
PspCI	CACGTG	1 cut(s)	995
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	4 cut(s)	94, 293, 757, 1037
PspN4I	GGNNCC	2 cut(s)	21, 1225
PspPI	GGNCC	1 cut(s)	1224
PspPPI	RGGWCCY	1 cut(s)	1224
PvuII	CAGCTG	1 cut(s)	1127
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	590, 884
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	3 cut(s)	205, 396, 1119
Sau3AI	GATC	4 cut(s)	141, 354, 582, 987
Sau96I	GGNCC	1 cut(s)	1224
SchI	GAGTC	4 cut(s)	158, 221, 284, 1147
ScrFI	CCNGG	4 cut(s)	96, 295, 759, 1039
SduI	GDGCHC	2 cut(s)	24, 1000
SfaNI	GCATC	5 cut(s)	326, 552, 840, 876, 1156
SinI	GGWCC	1 cut(s)	1224
SmiMI	CAYNNNNRTG	2 cut(s)	590, 884
SsiI	CCGC	5 cut(s)	69, 168, 205, 530, 690
SspI	AATATT	1 cut(s)	134
SspMI	CTAG	2 cut(s)	48, 84
StyD4I	CCNGG	4 cut(s)	94, 293, 757, 1037
StyI	CCWWGG	2 cut(s)	413, 549
TaaI	ACNGT	3 cut(s)	685, 749, 1094
TaiI	ACGT	3 cut(s)	237, 728, 997
TaqI	TCGA	3 cut(s)	225, 279, 953
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	2 cut(s)	459, 1033
TseI	GCWGC	2 cut(s)	395, 1118
TspDTI	ATGAA	3 cut(s)	239, 450, 868
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	2 cut(s)	459, 1033
VpaK11BI	GGWCC	1 cut(s)	1224
XapI	RAATTY	6 cut(s)	210, 305, 619, 836, 910, 1106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	2 cut(s)	48, 84
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.