Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006142

Physical Location & Seq

Genomic Coordinates Reverse (-)

54586419 .. 54589596

Gene Structure 3178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0450400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCCACTGGACCGCTTCGCAAGAGGCTCAATAAGCGATCCTCACACCCCAAACCCCGCACTGCGATGGCAACCCGGCCTAGTTCGCCCAAATTCTACAAAAACACCTCGCTGATTCTCCTCATATTTCTCATTATCGCCGCTTTTGTCCTCTTGTGCATTTCGTCGAACATTTTTAGCACAGTTGATTACAGCACCGTGTTTACCGGAACTTATTCGATCGAGGTCGTCAATGAGTTCCCTCATGATCCCAATGCCTTCACCCAGGGGCTTCTTTATGCTGGAAATGGGAGCTTATTTGAGTCCACTGGGCTTTATGGCCAGTCATCAGTGCGTAAGGTTGATATTCAAACAGGGAAGGTTGAGGTTCTTCAGGAGATGGATTCTAGATATTTTGGGGAGGGATTAACTCTTCTCGGTGAAAGGCTATTCCAAGTAACTTGGTTGACGAAAATTGGTTTCAAATATGACCGAAATGATTTAAGCAAATCTGAAAAGTTCACTCATCAAATGCAAGATGGTTGGGGACTGGCTACTGATGGAAAAGTGTTATTTGGAAGTGATGGCTCGTCCGTGTTGTACAAGATTGACCCTCAAACATTGAAAGTTATAGACAAACACATAGTCAAATACAAAGATCATGAAGTGCACAACCTCAATGAGTTGGAGTTTATAAAAGGCGAAGTTTGGGCAAATGTTTATCAGACAGACTGCATTGCTAGAATCTCACAGGATGATGGTAGGGTGCTTGGATGGATTCTCCTTCCAAATTTAAGGGAGGGTTTACTAGCTGCTGGAAATAATGCTATCGATGTGCTAAACGGCATTGCATGGGATAGCGACACCAACCGTATTTTTGTGACTGGAAAACTATGGCCGAAGCTTTATGAGATCAAGCTGCATCCAATAAAGAAACAGTTCAAGGATGGAGCCATTGAGCAGCTATGCCTACGGCAGACATTCTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

323

Amino Acids

36.53

Weight (kDa)

8.76

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_cyclase_2	PF05096	67 - 300	1.2e-92	Glutamine cyclotransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14770 AT5G14770 AT5G14770 AT5G14770 AT5G14770
fragaria_vesca	FvH4_7g02371
malus_domestica	MD00G1202300.v1.1 MD00G1202400.v1.1 MD03G1142100.v1.1 MD11G1161100.v1.1 MD11G1161200.v1.1
prunus_persica	Prupe.2G007100_v2.0.a1
pyrus_communis	pycom03g09690 pycom11g13400
rosa_chinensis	RchiOBHm_Chr1g0384651
rosa_laevigata	RLG00000008173 RLG00000026023
rosa_multiflora	Rmu_co8325115.1_g000001 Rmu_sc0012136.1_g000024
rosa_roxburghii	Rroxscaffold_4G00276490
rosa_rugosa	Rorug01G0450400
rosa_samantha	Rh1AG475000 Rh1BG433200 Rh1CG446400 Rh1CG446600 Rh1DG465700
rosa_wichuraiana	Rw1G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
AciI	CCGC	3 cut(s)	14, 58, 141
AclWI	GGATC	2 cut(s)	33, 242
AcoI	YGGCCR	3 cut(s)	3, 319, 875
AcsI	RAATTY	2 cut(s)	92, 769
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	350, 463, 604, 922
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	5 cut(s)	294, 791, 883, 898, 943
AluI	AGCT	5 cut(s)	294, 791, 883, 898, 943
Alw21I	GWGCWC	1 cut(s)	651
Alw44I	GTGCAC	1 cut(s)	647
AlwI	GGATC	2 cut(s)	33, 242
AoxI	GGCC	4 cut(s)	3, 77, 319, 875
ApaLI	GTGCAC	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	791, 898, 940
ApoI	RAATTY	2 cut(s)	92, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
Asp700I	GAANNNNTTC	2 cut(s)	214, 917
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	253, 431
AvaII	GGWCC	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	651
BalI	TGGCCA	2 cut(s)	5, 321
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	3 cut(s)	778, 885, 952
BccI	CCATC	8 cut(s)	61, 373, 512, 533, 557, 731, 747, 920
BceAI	ACGGC	2 cut(s)	838, 968
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	4 cut(s)	81, 387, 720, 788
BisI	GCNGC	4 cut(s)	141, 792, 899, 941
BlsI	GCNGC	4 cut(s)	142, 793, 900, 942
Bme1390I	CCNGG	2 cut(s)	76, 266
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	931
BmrFI	CCNGG	2 cut(s)	76, 266
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	910
BmuI	ACTGGG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	810
BsaJI	CCNNGG	2 cut(s)	264, 265
BsaWI	WCCGGW	1 cut(s)	206
Bse1I	ACTGG	5 cut(s)	13, 313, 322, 534, 868
Bse3DI	GCAATG	2 cut(s)	714, 825
BseBI	CCWGG	1 cut(s)	266
BseCI	ATCGAT	1 cut(s)	810
BseDI	CCNNGG	2 cut(s)	264, 265
BseGI	GGATG	4 cut(s)	739, 758, 901, 931
BseMI	GCAATG	2 cut(s)	714, 825
BseNI	ACTGG	5 cut(s)	13, 313, 322, 534, 868
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	3 cut(s)	778, 885, 952
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	4 cut(s)	5, 79, 321, 877
BshVI	ATCGAT	1 cut(s)	810
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	2 cut(s)	76, 207
BslFI	GGGAC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	540
BsnI	GGCC	4 cut(s)	5, 79, 321, 877
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	5 cut(s)	38, 219, 247, 637, 891
BspACI	CCGC	3 cut(s)	14, 58, 141
BspANI	GGCC	4 cut(s)	5, 79, 321, 877
BspDI	ATCGAT	1 cut(s)	810
BspHI	TCATGA	2 cut(s)	244, 640
BspLI	GGNNCC	1 cut(s)	931
BspPI	GGATC	2 cut(s)	33, 242
BsrDI	GCAATG	2 cut(s)	714, 825
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	5 cut(s)	13, 313, 322, 534, 868
BssECI	CCNNGG	2 cut(s)	264, 265
BssMI	GATC	5 cut(s)	38, 219, 247, 637, 891
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	4 cut(s)	184, 199, 851, 918
Bst6I	CTCTTC	1 cut(s)	417
BstAUI	TGTACA	1 cut(s)	579
BstF5I	GGATG	4 cut(s)	739, 758, 901, 931
BstKTI	GATC	5 cut(s)	41, 222, 250, 640, 894
BstMBI	GATC	5 cut(s)	38, 219, 247, 637, 891
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 85
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	74, 264
BstSLI	GKGCMC	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	778, 885, 952
Bsu15I	ATCGAT	1 cut(s)	810
BsuRI	GGCC	4 cut(s)	5, 79, 321, 877
BsuTUI	ATCGAT	1 cut(s)	810
BtgZI	GCGATG	1 cut(s)	80
BtsCI	GGATG	4 cut(s)	739, 758, 901, 931
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	4 cut(s)	6, 60, 306, 336
CciI	TCATGA	2 cut(s)	244, 640
Cfr13I	GGNCC	1 cut(s)	11
ClaI	ATCGAT	1 cut(s)	810
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	3 cut(s)	245, 641, 831
CviQI	GTAC	1 cut(s)	580
DpnI	GATC	5 cut(s)	40, 221, 249, 639, 893
DpnII	GATC	5 cut(s)	38, 219, 247, 637, 891
EaeI	YGGCCR	3 cut(s)	3, 319, 875
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	248, 644, 834
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	3 cut(s)	244, 640, 830
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	4 cut(s)	141, 792, 899, 941
FokI	GGATG	4 cut(s)	746, 765, 888, 938
Fsp4HI	GCNGC	4 cut(s)	141, 792, 899, 941
FspBI	CTAG	4 cut(s)	81, 387, 720, 788
GluI	GCNGC	4 cut(s)	141, 792, 899, 941
HaeIII	GGCC	4 cut(s)	5, 79, 321, 877
HapII	CCGG	2 cut(s)	76, 207
Hin1II	CATG	3 cut(s)	248, 644, 834
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	5 cut(s)	115, 302, 383, 723, 757
HpaII	CCGG	2 cut(s)	76, 207
HphI	GGTGA	2 cut(s)	253, 431
Hpy166II	GTNNAC	6 cut(s)	204, 306, 447, 501, 649, 785
Hpy188I	TCNGA	2 cut(s)	493, 705
Hpy188III	TCNNGA	4 cut(s)	245, 374, 387, 641
Hpy8I	GTNNAC	6 cut(s)	204, 306, 447, 501, 649, 785
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	268, 352, 773
HpyCH4III	ACNGT	4 cut(s)	184, 199, 851, 918
HpyCH4V	TGCA	6 cut(s)	159, 514, 649, 714, 830, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 85
Hsp92II	CATG	3 cut(s)	248, 644, 834
Kzo9I	GATC	5 cut(s)	38, 219, 247, 637, 891
LmnI	GCTCC	2 cut(s)	291, 929
Lsp1109I	GCAGC	3 cut(s)	778, 885, 952
LweI	GCATC	1 cut(s)	910
MaeI	CTAG	4 cut(s)	81, 387, 720, 788
MaeIII	GTNAC	2 cut(s)	436, 859
MalI	GATC	5 cut(s)	40, 221, 249, 639, 893
MboI	GATC	5 cut(s)	38, 219, 247, 637, 891
MboII	GAAGA	2 cut(s)	362, 404
MhlI	GDGCHC	1 cut(s)	651
MlsI	TGGCCA	2 cut(s)	5, 321
MluCI	AATT	3 cut(s)	92, 453, 769
MluNI	TGGCCA	2 cut(s)	5, 321
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	645
Mox20I	TGGCCA	2 cut(s)	5, 321
MroXI	GAANNNNTTC	2 cut(s)	214, 917
MscI	TGGCCA	2 cut(s)	5, 321
MseI	TTAA	3 cut(s)	407, 482, 773
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	2 cut(s)	5, 321
MspI	CCGG	2 cut(s)	76, 207
MspR9I	CCNGG	2 cut(s)	76, 266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	34, 85
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	5 cut(s)	38, 219, 247, 637, 891
NlaIII	CATG	3 cut(s)	248, 644, 834
NlaIV	GGNNCC	1 cut(s)	931
NmuCI	GTSAC	1 cut(s)	859
PagI	TCATGA	2 cut(s)	244, 640
PasI	CCCWGGG	1 cut(s)	265
PdmI	GAANNNNTTC	2 cut(s)	214, 917
PfeI	GAWTC	4 cut(s)	115, 383, 723, 757
PkrI	GCNGC	4 cut(s)	142, 793, 900, 942
Ple19I	CGATCG	1 cut(s)	222
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	674
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	931
PspPI	GGNCC	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	222
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	407, 482, 773
SatI	GCNGC	4 cut(s)	141, 792, 899, 941
Sau3AI	GATC	5 cut(s)	38, 219, 247, 637, 891
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	76, 266
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	1 cut(s)	910
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	3 cut(s)	92, 453, 769
SsiI	CCGC	3 cut(s)	14, 58, 141
SspMI	CTAG	4 cut(s)	81, 387, 720, 788
StyD4I	CCNGG	2 cut(s)	74, 264
TaaI	ACNGT	4 cut(s)	184, 199, 851, 918
TaqI	TCGA	4 cut(s)	167, 218, 222, 810
TaqII	GACCGA	1 cut(s)	486
TasI	AATT	3 cut(s)	92, 453, 769
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	4 cut(s)	115, 383, 723, 757
Tru1I	TTAA	3 cut(s)	407, 482, 773
Tru9I	TTAA	3 cut(s)	407, 482, 773
TscAI	CASTG	4 cut(s)	13, 67, 313, 336
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	3 cut(s)	791, 898, 940
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	2 cut(s)	657, 956
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	4 cut(s)	13, 67, 313, 336
VneI	GTGCAC	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	92, 769
XbaI	TCTAGA	1 cut(s)	386
XmnI	GAANNNNTTC	2 cut(s)	214, 917
XspI	CTAG	4 cut(s)	81, 387, 720, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.