Rh1DG465700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006142
Physical Location & Seq
Reverse (-)
66739434 .. 66747092
7659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG465700.1

Sequence Viewer

Length: 3066 bp
ATGAATATGATGCGCCAGCTTTTGAAGAAGCAAGCCAAGACTAGTCTACTTTTCCTGGCTCGATCTTTGAGTTCCTCCTCGTCCCACTCATTTGGCTTTGCTCCCCAAAACTACTACTACTCCATCCCACCATCCAAGACTCACCTCTATTCATCCTTCTTTTGCACCCTTATACACCTCTACTTGGCCTGCGGCAGATTCTCCGATGCTTCCCACGCCTTCTTCTCTATGCGAAGTCATGGCCTCGTTCCTGTTCTGCCTCTTTGGAATCGGCTTCTTCACCATTTCAGTGCCTCTGGTTTGTCTTCTCAGGTATCCCTTCTCTACTCTGAGATGCTCTCCTGTGGGGTTCTGCCTAGTCTTTTCACCCGCAACATATTGATTCACTCTTTCTGCAAAGTCGGAAACTTGAGTCTGGCACTGCATTTCTTAAGAAATAATACTCAAATTGATACTGTTTCCTATAACACTCTCATTTGGGGCTTCTCCCAACAAGGAATGCCTTATCAAGCTTTTGGATTTTTGTCTCAAATGCTGCGGAGGGCTATATTCATAGATTCTTATACTTGCAATTTACTAGTTAACGGGTTTTGCCGAATTGGCCTAGTAGACTATGCAGAATGGGTTATGGATAATTTGGTCAGTGGTGGAATTACTCAGGATGTTGTAGGTTTTAACACCTTGATTGCTGGATATTGCAAAGCTGGACAAGTTAGCCGTGCACTCGAGTTAATTGAGAGAATGGAGAGGGATGGTCTTCTTCCTGATACTGTTACTTATAATACTCTTGTTCATGGGTTTTGTCACGTGGGGGATTTTGTAAATGCCAAGAGTACAATACATAACATTTTGAGATCTCAAGGAAACGAAGACGGCCCTCATAATGAGAGAGGCCGTGATCAGAACTGGACTGGCAGTATGAATTTTAGACCAAATGTTATAACTCTCACCACTCTCATTAGCGCTTACAGTAAGCATCAAGGACTTGAAGAGGCTCTTTCTCTGTATGAGGAAATGGTTATGAATGGCATTTTCCCGGATGTTGTTACCTATAGCTCCATTATATATGGTCTTTGCAAGCATGGGAGGCTGTCAGAAGCCAAAGTGCTCTTAAGGGAGATAGAGAAAATGGGTGTAAATCCTAATAATGTCTCCTTCACTACCCTCGTGGATTCTTTGTTTAAGGCAGGCTCTTCTAGGGAAGCTCTCATCCTTCAAGGCCAAATGGTGGTTCGCGGCCTAGTTTTTGATTTAGTAATTTGCACTGCTTTGATGGCTGGACTGTTTAAAGTTGGAAAAGTCGGCGAGGCTAAGGACCTGTTTCGAACAATTTCAAAGCTCAGCTTAGTTCCAAACTGTATCACCTATTCTGCTTTGATAAATGGGCATTGCAATTCAGGAGACATGGGCGGTGCAGAAGCAATACTTAGAGAAATGGAAGATAAACATGTTTTCCCCAATATTATCACTTATTCTTCTCTCATAAAGGGTTATATGAAGAAAGGAATGATTGGTGATGCTATTGGTTTATTGAGGAAGATGGTGCAAAAAAATGTATTGCCAAATGTTTTTGTGTATGCAATACTAATTGATGGGTGTTTTAAGGCAGGTAAACAGGAATTTGCCCTTGATCTCTACAATGAAATGAAAATTAGAGGATTGGAGGACAACAGTTTCATATTTGATGCTTTTGTGAACAACATGAAAAAGTGCAGAAGGATGGAACAAGCTGAGGGATTAATTATGGACATGACTTCTGAGGGCTTGTTTCTTGACCGTGTTAACTACACATCTCTGATGGATGGCTTCTTTAAAGTGGGAAAAGAGTCAATTGCTCTTAACTTGTTCCAAGAAATGGCGGAGAAAAATATAGGGTTTGATGTTGTTTCATACAATGTCTTGATAAATGGTCTGTTGCGGCTTGGGAAATATGAAGTCAAATCTGTCTATACTGGAATGAGAGAGTTGGGAGTGGCTCCCGACTGTGTCACGTACAATACCCTGATTATTGCTTTCTGCAGAGAGGGTGACACTGAAAATGCTTTTGAACTTTGGAATGAGATGAAGGGTCAAGGGTTCATTTTAAATTCATTCACTTGTAACATTCTGATAGGAGGGCTTTGTGAAGAAGATAAGATTGAAAAAGCAATGGATGTCTTAAATGAAATGGTGGCTGTGGGTTCTCTCCCTAGCTCAGTTACTCATAGGCTTCTGCTTGATGCTTCTTCAAAGAGTAGAAGAGCGGATCCAATTTTGCAAATGCATCAGAAGCTTGTAAGTATGGGGCTTGACCTCAATCATGATGTTTATAATAATCTCATCACTATCTTATGTAGGCTGGGAATGACCAGGAAGGCCACTACAGTATTAGAAGAGATGACTGGAAGAGGATTTTTAGCTGATACTATTACTTACAATGCCCTTATACGTGGATATGGTATGAGCAGCCATCTAAAAAGGGCTTTTGCTACACACTCAAAGATGCTGGCTGAGAGAGTTTCTCCAAATATTGAAACGTACAATATTCTTTTAGGGGTCCTTTCAGGTGCTGGTTTGATGACAAAGGCAGATGAATTATTTAGTGAAATGAAGAACATAGGCTTTCTTCCTAATGCTTCCACATATGATATATTGGTTTCCGGCTATGGTAAGATTGGAAATAAGAAGGAAGCCATAAGGCGTTATTGTGAAATGGTAAGCAAAAGTTTTGTTCCCAATACTAGCACCTACAATGTGCTTATTAGTGATTTTGCTAAGGTGGGAAAGATGAGCCAAGCTAGGGAGTTTATGAATGAGATGCAGGCAAGGGGTGCCTGTCCTAATTCTTCAACATACAGCATACTAATCTGTGGCTGGTGTAAGCTATCAAAGCAGCCAGAGGTGGAGAAGAAGTTGCGAAAGTCATACCGAGCTGAGGCAAAGAGATTATTAGCCGAGATGAATGAGAAAGGGTATGTTCCAGGTGGAAGTACCCTTTCATCTATCAGTTCTACCTTTGCTAGACCAGGAAAGAAGGCTGATGCTCAGAGGCTATTAAAGGAACTGTACATCAGCAAGAACATATGA

Protein Analysis

1021

Amino Acids

113.86

Weight (kDa)

8.77

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 89 - 133 1.9e-06 PPR repeat family
PPR_2 PF13041 151 - 199 2.7e-12 PPR repeat family
PPR_3 PF13812 209 - 264 3.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 217 - 249 1.9e-09 PPR repeat
PPR_2 PF13041 221 - 269 2.1e-17 PPR repeat family
PPR PF01535 225 - 253 7.6e-08 PPR repeat
PPR_1 PF12854 251 - 276 3.8e-07 PPR repeat
PPR_3 PF13812 308 - 355 6.7e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 311 - 360 6.2e-16 PPR repeat family
PPR PF01535 314 - 344 4.4e-06 PPR repeat
PPR_1 PF12854 342 - 374 5.1e-12 PPR repeat
PPR_2 PF13041 346 - 395 8e-13 PPR repeat family
PPR PF01535 349 - 379 1.9e-06 PPR repeat
PPR_2 PF13041 417 - 465 1.8e-10 PPR repeat family
PPR_long PF17177 436 - 539 4.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 441 - 498 2.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 449 - 480 3.1e-09 PPR repeat
PPR_2 PF13041 454 - 498 7.4e-12 PPR repeat family
PPR_1 PF12854 483 - 515 6.7e-08 PPR repeat
PPR_2 PF13041 486 - 535 4.3e-14 PPR repeat family
PPR PF01535 489 - 519 2.1e-06 PPR repeat
PPR_2 PF13041 521 - 558 4.2e-07 PPR repeat family
PPR_3 PF13812 581 - 636 4.9e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 592 - 639 3.2e-10 PPR repeat family
PPR_long PF17177 610 - 748 5.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 627 - 674 1.6e-10 PPR repeat family
PPR_1 PF12854 657 - 689 7.8e-13 PPR repeat
PPR_2 PF13041 660 - 708 9.6e-17 PPR repeat family
PPR PF01535 663 - 693 4.7e-09 PPR repeat
PPR_1 PF12854 692 - 724 5.9e-06 PPR repeat
PPR_2 PF13041 696 - 741 2.1e-10 PPR repeat family
PPR_2 PF13041 769 - 812 2.4e-09 PPR repeat family
PPR_3 PF13812 789 - 847 2e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 801 - 847 3.7e-10 PPR repeat family
PPR_long PF17177 814 - 948 5.3e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 835 - 883 8.6e-12 PPR repeat family
PPR_2 PF13041 878 - 919 1.6e-07 PPR repeat family
PPR_2 PF13041 905 - 954 1.1e-14 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 780, 941, 2310
Acc36I ACCTGC 1 cut(s) 1598
AccB1I GGYRCC 1 cut(s) 2810
AccB7I CCANNNNNTGG 2 cut(s) 1228, 1855
AccBSI CCGCTC 1 cut(s) 2243
AccI GTMKAC 2 cut(s) 46, 609
AccII CGCG 1 cut(s) 1236
AciI CCGC 8 cut(s) 192, 370, 538, 1236, 1410, 1859, 1918, 2243
AclWI GGATC 2 cut(s) 2240, 2253
AcsI RAATTY 3 cut(s) 922, 1619, 2086
AcvI CACGTG 1 cut(s) 808
AfaI GTAC 5 cut(s) 835, 1994, 2519, 2971, 3047
AfeI AGCGCT 1 cut(s) 964
AfiI CCNNNNNNNGG 5 cut(s) 184, 1228, 1855, 2779, 2914
AflII CTTAAG 2 cut(s) 430, 1111
AflIII ACRYGT 1 cut(s) 1447
AgsI TTSAA 9 cut(s) 25, 989, 1217, 1335, 2048, 2141, 2229, 2513, 2829
AhlI ACTAGT 2 cut(s) 41, 577
AjnI CCWGG 4 cut(s) 54, 2348, 2959, 3004
AjuI GAANNNNNNNTTGG 2 cut(s) 1215, 1247
Alw21I GWGCWC 2 cut(s) 724, 1110
Alw26I GTCTC 3 cut(s) 531, 1156, 1395
Alw44I GTGCAC 1 cut(s) 720
AlwI GGATC 2 cut(s) 2240, 2253
AlwNI CAGNNNCTG 1 cut(s) 2549
Ama87I CYCGRG 1 cut(s) 725
Aor51HI AGCGCT 1 cut(s) 964
AoxI GGCC 8 cut(s) 186, 241, 601, 874, 892, 1219, 1237, 2355
ApaLI GTGCAC 1 cut(s) 720
ApeKI GCWGC 3 cut(s) 535, 2445, 2872
ApoI RAATTY 3 cut(s) 922, 1619, 2086
AseI ATTAAT 1 cut(s) 1739
Asp700I GAANNNNTTC 1 cut(s) 1330
AspLEI GCGC 2 cut(s) 15, 965
AspS9I GGNCC 3 cut(s) 875, 1315, 2536
AsuC2I CCSGG 1 cut(s) 1037
AsuHPI GGTGA 7 cut(s) 134, 272, 358, 940, 1354, 1526, 2039
AsuII TTCGAA 1 cut(s) 1324
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 2 cut(s) 1315, 2536
BaeGI GKGCMC 1 cut(s) 724
BamHI GGATCC 1 cut(s) 2245
BanI GGYRCC 1 cut(s) 2810
BauI CACGAG 1 cut(s) 1166
BbrPI CACGTG 1 cut(s) 808
BbsI GAAGAC 3 cut(s) 297, 749, 876
Bbv12I GWGCWC 2 cut(s) 724, 1110
BbvCI CCTCAGC 2 cut(s) 1731, 2913
BbvI GCAGC 3 cut(s) 522, 2457, 2884
BceAI ACGGC 3 cut(s) 702, 879, 889
BciT130I CCWGG 4 cut(s) 56, 2350, 2961, 3006
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 898
BcnI CCSGG 1 cut(s) 1037
BcoDI GTCTC 3 cut(s) 531, 1156, 1395
BcuI ACTAGT 2 cut(s) 41, 577
BfmI CTRYAG 3 cut(s) 1051, 2017, 2361
BfoI RGCGCY 1 cut(s) 966
BfrI CTTAAG 2 cut(s) 430, 1111
BfuAI ACCTGC 1 cut(s) 1598
BfuI GTATCC 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 600
BglII AGATCT 1 cut(s) 854
BisI GCNGC 6 cut(s) 193, 536, 1237, 1919, 2446, 2873
BlpI GCTNAGC 1 cut(s) 1340
BlsI GCNGC 6 cut(s) 194, 537, 1238, 1920, 2447, 2874
Bme1390I CCNGG 5 cut(s) 56, 1037, 2350, 2961, 3006
Bme18I GGWCC 2 cut(s) 1315, 2536
BmeT110I CYCGRG 1 cut(s) 725
BmgT120I GGNCC 3 cut(s) 875, 1315, 2536
BmiI GGNNCC 4 cut(s) 1977, 2247, 2537, 2812
BmrFI CCNGG 5 cut(s) 56, 1037, 2350, 2961, 3006
BpiI GAAGAC 3 cut(s) 297, 749, 876
BplI GAGNNNNNCTC 4 cut(s) 323, 355, 2485, 2517
Bpu10I CCTNAGC 4 cut(s) 1311, 1731, 2754, 2913
Bpu1102I GCTNAGC 1 cut(s) 1340
Bpu14I TTCGAA 1 cut(s) 1324
BpuEI CTTGAG 2 cut(s) 430, 843
BpuMI CCSGG 1 cut(s) 1037
BsaAI YACGTR 3 cut(s) 808, 1992, 2429
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 2876, 2906
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 1228, 1855, 2779, 2914
Bse1I ACTGG 4 cut(s) 911, 916, 1957, 2386
Bse3DI GCAATG 2 cut(s) 1387, 2154
BseBI CCWGG 4 cut(s) 56, 2350, 2961, 3006
BseLI CCNNNNNNNGG 5 cut(s) 184, 1228, 1855, 2779, 2914
BseMI GCAATG 2 cut(s) 1387, 2154
BseNI ACTGG 4 cut(s) 911, 916, 1957, 2386
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 724
BseXI GCAGC 3 cut(s) 522, 2457, 2884
BseYI CCCAGC 1 cut(s) 2338
BsgI GTGCAG 2 cut(s) 1434, 1732
Bsh1236I CGCG 1 cut(s) 1236
BshFI GGCC 8 cut(s) 188, 243, 603, 876, 894, 1221, 1239, 2357
BshNI GGYRCC 1 cut(s) 2810
BsiHKAI GWGCWC 2 cut(s) 724, 1110
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 2 cut(s) 1037, 2640
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 5 cut(s) 184, 1228, 1855, 2779, 2914
BsmAI GTCTC 3 cut(s) 531, 1156, 1395
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 8 cut(s) 188, 243, 603, 876, 894, 1221, 1239, 2357
BsoBI CYCGRG 1 cut(s) 725
Bsp119I TTCGAA 1 cut(s) 1324
Bsp1286I GDGCHC 2 cut(s) 724, 1110
Bsp1407I TGTACA 1 cut(s) 3045
Bsp143I GATC 5 cut(s) 62, 854, 898, 1630, 2245
Bsp1720I GCTNAGC 1 cut(s) 1340
BspACI CCGC 8 cut(s) 192, 370, 538, 1236, 1410, 1859, 1918, 2243
BspANI GGCC 8 cut(s) 188, 243, 603, 876, 894, 1221, 1239, 2357
BspFNI CGCG 1 cut(s) 1236
BspHI TCATGA 1 cut(s) 2299
BspLI GGNNCC 4 cut(s) 1977, 2247, 2537, 2812
BspMAI CTGCAG 1 cut(s) 2021
BspMI ACCTGC 1 cut(s) 1598
BspPI GGATC 2 cut(s) 2240, 2253
BspQI GCTCTTC 2 cut(s) 1198, 2233
BspT104I TTCGAA 1 cut(s) 1324
BspT107I GGYRCC 1 cut(s) 2810
BspTI CTTAAG 2 cut(s) 430, 1111
BsrBI CCGCTC 1 cut(s) 2243
BsrDI GCAATG 2 cut(s) 1387, 2154
BsrGI TGTACA 1 cut(s) 3045
BsrI ACTGG 4 cut(s) 911, 916, 1957, 2386
BssMI GATC 5 cut(s) 62, 854, 898, 1630, 2245
BssSI CACGAG 1 cut(s) 1166
Bst2BI CACGAG 1 cut(s) 1166
Bst2UI CCWGG 4 cut(s) 56, 2350, 2961, 3006
Bst6I CTCTTC 5 cut(s) 984, 1198, 2233, 2367, 2380
BstAFI CTTAAG 2 cut(s) 430, 1111
BstAPI GCANNNNNTGC 1 cut(s) 2810
BstAUI TGTACA 1 cut(s) 3045
BstBAI YACGTR 3 cut(s) 808, 1992, 2429
BstBI TTCGAA 1 cut(s) 1324
BstC8I GCNNGC 7 cut(s) 17, 33, 190, 1079, 1189, 2487, 2802
BstFNI CGCG 1 cut(s) 1236
BstH2I RGCGCY 1 cut(s) 966
BstHHI GCGC 2 cut(s) 15, 965
BstKTI GATC 5 cut(s) 65, 857, 901, 1633, 2248
BstMAI GTCTC 3 cut(s) 531, 1156, 1395
BstMBI GATC 5 cut(s) 62, 854, 898, 1630, 2245
BstMWI GCNNNNNNNGC 7 cut(s) 215, 600, 1087, 1274, 2269, 2810, 2869
BstNI CCWGG 4 cut(s) 56, 2350, 2961, 3006
BstNSI RCATGY 1 cut(s) 1451
BstSCI CCNGG 5 cut(s) 54, 1035, 2348, 2959, 3004
BstSFI CTRYAG 3 cut(s) 1051, 2017, 2361
BstSLI GKGCMC 1 cut(s) 724
BstUI CGCG 1 cut(s) 1236
BstV1I GCAGC 3 cut(s) 522, 2457, 2884
BstV2I GAAGAC 3 cut(s) 297, 749, 876
BstX2I RGATCY 2 cut(s) 854, 2245
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 2 cut(s) 854, 2245
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 8 cut(s) 188, 243, 603, 876, 894, 1221, 1239, 2357
BtsI GCAGTG 2 cut(s) 419, 1263
BtsIMutI CAGTG 5 cut(s) 295, 419, 649, 1263, 2031
BveI ACCTGC 1 cut(s) 1598
Cac8I GCNNGC 7 cut(s) 17, 33, 190, 1079, 1189, 2487, 2802
CaiI CAGNNNCTG 1 cut(s) 2549
CciI TCATGA 1 cut(s) 2299
CfoI GCGC 2 cut(s) 15, 965
Cfr13I GGNCC 3 cut(s) 875, 1315, 2536
Csp6I GTAC 5 cut(s) 834, 1993, 2518, 2970, 3046
CviAII CATG 8 cut(s) 239, 794, 1082, 1405, 1448, 1702, 1750, 2300
CviQI GTAC 5 cut(s) 834, 1993, 2518, 2970, 3046
DpnI GATC 5 cut(s) 64, 856, 900, 1632, 2247
DpnII GATC 5 cut(s) 62, 854, 898, 1630, 2245
DraI TTTAAA 3 cut(s) 1288, 1813, 2085
Eam1104I CTCTTC 5 cut(s) 984, 1198, 2233, 2367, 2380
EarI CTCTTC 5 cut(s) 984, 1198, 2233, 2367, 2380
EciI GGCGGA 1 cut(s) 1874
Eco47I GGWCC 2 cut(s) 1315, 2536
Eco47III AGCGCT 1 cut(s) 964
Eco72I CACGTG 1 cut(s) 808
Eco88I CYCGRG 1 cut(s) 725
EcoO109I RGGNCCY 2 cut(s) 1315, 2536
EcoRII CCWGG 4 cut(s) 54, 2348, 2959, 3004
EcoT22I ATGCAT 1 cut(s) 2265
FaeI CATG 8 cut(s) 242, 797, 1085, 1408, 1451, 1705, 1753, 2303
FalI AAGNNNNNCTT 6 cut(s) 981, 1013, 1328, 1360, 1410, 1442
FaqI GGGAC 1 cut(s) 67
FatI CATG 8 cut(s) 238, 793, 1081, 1404, 1447, 1701, 1749, 2299
FauI CCCGC 1 cut(s) 377
FauNDI CATATG 2 cut(s) 2623, 3062
FbaI TGATCA 1 cut(s) 898
FblI GTMKAC 2 cut(s) 46, 609
Fnu4HI GCNGC 6 cut(s) 193, 536, 1237, 1919, 2446, 2873
Fsp4HI GCNGC 6 cut(s) 193, 536, 1237, 1919, 2446, 2873
GlaI GCGC 2 cut(s) 14, 964
GluI GCNGC 6 cut(s) 193, 536, 1237, 1919, 2446, 2873
GsaI CCCAGC 1 cut(s) 2342
HaeII RGCGCY 1 cut(s) 966
HaeIII GGCC 8 cut(s) 188, 243, 603, 876, 894, 1221, 1239, 2357
HapII CCGG 2 cut(s) 1037, 2640
HhaI GCGC 2 cut(s) 15, 965
Hin1II CATG 8 cut(s) 242, 797, 1085, 1408, 1451, 1705, 1753, 2303
Hin6I GCGC 2 cut(s) 13, 963
HinP1I GCGC 2 cut(s) 13, 963
HincII GTYRAC 2 cut(s) 583, 1783
HindII GTYRAC 2 cut(s) 583, 1783
HindIII AAGCTT 2 cut(s) 510, 2270
HinfI GANTC 8 cut(s) 139, 198, 268, 382, 412, 557, 1172, 1826
HpaI GTTAAC 2 cut(s) 583, 1783
HpaII CCGG 2 cut(s) 1037, 2640
HphI GGTGA 7 cut(s) 134, 272, 358, 940, 1354, 1526, 2039
Hpy166II GTNNAC 7 cut(s) 47, 583, 610, 722, 1613, 1696, 1783
Hpy188III TCNNGA 7 cut(s) 659, 764, 1398, 1772, 1900, 1979, 2300
Hpy8I GTNNAC 7 cut(s) 47, 583, 610, 722, 1613, 1696, 1783
HpyCH4IV ACGT 4 cut(s) 807, 1991, 2428, 2516
HpyF10VI GCNNNNNNNGC 7 cut(s) 215, 600, 1087, 1274, 2269, 2810, 2869
HpySE526I ACGT 4 cut(s) 807, 1991, 2428, 2516
Hsp92II CATG 8 cut(s) 242, 797, 1085, 1408, 1451, 1705, 1753, 2303
HspAI GCGC 2 cut(s) 13, 963
Ksp22I TGATCA 1 cut(s) 898
KspAI GTTAAC 2 cut(s) 583, 1783
Kzo9I GATC 5 cut(s) 62, 854, 898, 1630, 2245
LguI GCTCTTC 2 cut(s) 1198, 2233
LmnI GCTCC 3 cut(s) 106, 1061, 1981
Lsp1109I GCAGC 3 cut(s) 522, 2457, 2884
MaeII ACGT 4 cut(s) 807, 1991, 2428, 2516
MaeIII GTNAC 7 cut(s) 772, 803, 1045, 1987, 2027, 2099, 2197
MalI GATC 5 cut(s) 64, 856, 900, 1632, 2247
MbiI CCGCTC 1 cut(s) 2243
MboI GATC 5 cut(s) 62, 854, 898, 1630, 2245
MfeI CAATTG 1 cut(s) 1830
MflI RGATCY 2 cut(s) 854, 2245
MhlI GDGCHC 2 cut(s) 724, 1110
MlyI GAGTC 3 cut(s) 133, 421, 1835
MmeI TCCRAC 2 cut(s) 382, 1273
Mph1103I ATGCAT 1 cut(s) 2265
MroXI GAANNNNTTC 1 cut(s) 1330
MslI CAYNNNNRTG 1 cut(s) 288
MspCI CTTAAG 2 cut(s) 430, 1111
MspI CCGG 2 cut(s) 1037, 2640
MspR9I CCNGG 5 cut(s) 56, 1037, 2350, 2961, 3006
MunI CAATTG 1 cut(s) 1830
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 4 cut(s) 56, 2350, 2961, 3006
MvnI CGCG 1 cut(s) 1236
MwoI GCNNNNNNNGC 7 cut(s) 215, 600, 1087, 1274, 2269, 2810, 2869
NciI CCSGG 1 cut(s) 1037
NdeI CATATG 2 cut(s) 2623, 3062
NdeII GATC 5 cut(s) 62, 854, 898, 1630, 2245
NlaIII CATG 8 cut(s) 242, 797, 1085, 1408, 1451, 1705, 1753, 2303
NlaIV GGNNCC 4 cut(s) 1977, 2247, 2537, 2812
NmeAIII GCCGAG 1 cut(s) 2959
NmuCI GTSAC 3 cut(s) 803, 1987, 2027
NsiI ATGCAT 1 cut(s) 2265
NspI RCATGY 1 cut(s) 1451
NspV TTCGAA 1 cut(s) 1324
PaeR7I CTCGAG 1 cut(s) 725
PagI TCATGA 1 cut(s) 2299
PciI ACATGT 1 cut(s) 1447
PciSI GCTCTTC 2 cut(s) 1198, 2233
PctI GAATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 1330
PfeI GAWTC 5 cut(s) 198, 268, 382, 557, 1172
PflFI GACNNNGTC 1 cut(s) 1985
PflMI CCANNNNNTGG 2 cut(s) 1228, 1855
PfoI TCCNGGA 1 cut(s) 1035
PkrI GCNGC 6 cut(s) 194, 537, 1238, 1920, 2447, 2874
PleI GAGTC 3 cut(s) 133, 420, 1834
PmaCI CACGTG 1 cut(s) 808
PmlI CACGTG 1 cut(s) 808
PpsI GAGTC 3 cut(s) 133, 420, 1834
Ppu21I YACGTR 3 cut(s) 808, 1992, 2429
PpuMI RGGWCCY 2 cut(s) 1315, 2536
PscI ACATGT 1 cut(s) 1447
PshBI ATTAAT 1 cut(s) 1739
PsiI TTATAA 3 cut(s) 780, 941, 2310
Psp5II RGGWCCY 2 cut(s) 1315, 2536
Psp6I CCWGG 4 cut(s) 54, 2348, 2959, 3004
PspCI CACGTG 1 cut(s) 808
PspFI CCCAGC 1 cut(s) 2338
PspGI CCWGG 4 cut(s) 54, 2348, 2959, 3004
PspN4I GGNNCC 4 cut(s) 1977, 2247, 2537, 2812
PspPI GGNCC 3 cut(s) 875, 1315, 2536
PspPPI RGGWCCY 2 cut(s) 1315, 2536
PspXI VCTCGAGB 1 cut(s) 725
PstI CTGCAG 1 cut(s) 2021
PstNI CAGNNNCTG 1 cut(s) 2549
PsuI RGATCY 2 cut(s) 854, 2245
PsyI GACNNNGTC 1 cut(s) 1985
RsaI GTAC 5 cut(s) 835, 1994, 2519, 2971, 3047
RsaNI GTAC 5 cut(s) 834, 1993, 2518, 2970, 3046
RseI CAYNNNNRTG 1 cut(s) 288
SapI GCTCTTC 2 cut(s) 1198, 2233
SatI GCNGC 6 cut(s) 193, 536, 1237, 1919, 2446, 2873
Sau3AI GATC 5 cut(s) 62, 854, 898, 1630, 2245
Sau96I GGNCC 3 cut(s) 875, 1315, 2536
SchI GAGTC 3 cut(s) 133, 421, 1835
ScrFI CCNGG 5 cut(s) 56, 1037, 2350, 2961, 3006
SduI GDGCHC 2 cut(s) 724, 1110
SfcI CTRYAG 3 cut(s) 1051, 2017, 2361
Sfr274I CTCGAG 1 cut(s) 725
SfuI TTCGAA 1 cut(s) 1324
SinI GGWCC 2 cut(s) 1315, 2536
SlaI CTCGAG 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 5 cut(s) 409, 430, 725, 858, 1111
SmoI CTYRAG 5 cut(s) 409, 430, 725, 858, 1111
SpeI ACTAGT 2 cut(s) 41, 577
SsiI CCGC 8 cut(s) 192, 370, 538, 1236, 1410, 1859, 1918, 2243
SspI AATATT 3 cut(s) 1462, 2509, 2524
StyD4I CCNGG 5 cut(s) 54, 1035, 2348, 2959, 3004
TaiI ACGT 4 cut(s) 810, 1994, 2431, 2519
TaqI TCGA 3 cut(s) 61, 726, 1324
TatI WGTACW 2 cut(s) 833, 3045
TauI GCSGC 3 cut(s) 195, 1239, 1921
TfiI GAWTC 5 cut(s) 198, 268, 382, 557, 1172
TscAI CASTG 5 cut(s) 295, 426, 649, 1270, 2038
TseFI GTSAC 3 cut(s) 803, 1987, 2027
TseI GCWGC 3 cut(s) 535, 2445, 2872
Tsp45I GTSAC 3 cut(s) 803, 1987, 2027
TspRI CASTG 5 cut(s) 295, 426, 649, 1270, 2038
Tth111I GACNNNGTC 1 cut(s) 1985
Van91I CCANNNNNTGG 2 cut(s) 1228, 1855
Vha464I CTTAAG 2 cut(s) 430, 1111
VneI GTGCAC 1 cut(s) 720
VpaK11BI GGWCC 2 cut(s) 1315, 2536
VspI ATTAAT 1 cut(s) 1739
XapI RAATTY 3 cut(s) 922, 1619, 2086
XceI RCATGY 1 cut(s) 1451
XhoI CTCGAG 1 cut(s) 725
XmiI GTMKAC 2 cut(s) 46, 609
XmnI GAANNNNTTC 1 cut(s) 1330
Zsp2I ATGCAT 1 cut(s) 2265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.