Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006142

Physical Location & Seq

Genomic Coordinates Forward (+)

8417342 .. 8420413

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3072 bp

ATGTTCTTCAGTAAGTTTGAAACATTGAGCTTCTTGTCATCAGCCAAACTTCGTCGATCAATTCCCATGGCCATTAAAAACCCACCCATCTCTGCTCCTTCCCATGTTCAAAGCTACAGTTCTGCCATCCCGCCATCCAAGACCCACCTCTACGCATCGTTCTTCTGCACCCTCGTACACCTGTACTTGACATGTGGCAGATTTTCCAATGCTTCTGGTGCCCTCTATTCTATGCGAAATCACGGCCTTGTTCCTGATTTGCCGCTCTGGAATCAACTTCTTTACCAATTCAATGCCTCAGGTTTTGTCTCTCATGTATCTTTTCTTTACGCTGAGATGCTCTCTTGTGGGGTTATGCCCAATATTTTCACCCGCAACATATTGATTCATTCTTTTTGCAAAGTGGGAAACTTGAGTCTTGCACTAGATTTCCTGAGAACTGGTGAAATTGATACTGTTTCATATAATACTGTCATATGGGGTTTCTGTAAACAAGGATTGGCTTATCAGGCTTTTGGGTTTTTGTCTCAAATGGTGAAGAGGGATATATCAATCGATTCGTATACTTGTAATACACTAGTGAACGGGTTTTGTCAAATTGGTTTGGTAGAGTATGCAGAATGGGTTATGGATAATTTGGTGGATGGTGGAATTCCACAGGATGTTGTAGGTTTTAACACCTTGATTGCTGGACATTGCAAAGCTGGTCAAGTTAGTCAGGCACTTGAATTGATGGAGAGAATGGGTAGGGACAGTCTGTCGCCTGATATTGTTACTTATAATACTCTCATACATGGGTTTTGCAACATGGGTGATTTTGTAAGGGCCAAGAGTCTTATAGATACAATGTTGAGATCACGGAGAAACAAAGAAGGCCCTCAAGATGAAAGAGATGATGGCCAGAATCAGACTAAAGGTGAGAACTTGAAACCAAACCTTATAACACACACCACACTCATTAGTTCTTACAGTAAGCAGCAAGGACTTGAAGAAGCTCTGTCTTTGTGTGAAGAAATGGTTATGAATGGCATTTATCCCGATGTAGTTACTTATAGCTCCATTATAAATGGCCTTTGCAAGTATGGGAGGTTATCAGAAGCCAAAGTGCTTCTAAGGGAGATGGAGGAAATGGATGTGGATCCTAATCATGTCTCCTACACTACCCTTGTGGATTCCTTGTTTAAAGCAGGCTCTTCCATGGAAGCTCTTGCCCTTCAAAGCCAAATGGTTGTTCGTGGCCTGGTTTTTGATTTGGTAATCTGTACTGCTTTAATTGTTGGACTCTTTAAGGTTGGGAAAGCTGATGAGGCTAAAGACCTGTTTCAAACAATTTCAAAGCTTGGCCTAGATCCAAACTCTATCGCCTACTCTGCATTGATACACGGGCTTTGCAATTTAGGAGACATGAATGATGCAGAATCTATACTTAAACAAATGGAGAAGCGCCACGTTCTACCAAATATTTTTACTTATTCTTCAATGATAAATGGCTTCATGAAGGAAGGAAAGCTTGATGAGGCCATGAATTTATTAAGGGAGATGGTGCAAAAGAATATCCTGCCAAACGCTTTTGTGTATGCAACACTAATTGATGGGTGTTTTAAGGCAGGCAAACAAGAGTTTGCTCCGGTGATTGATCTTTACAATGAAATGAAAATCAGAGGATTGGAGGAAAATAGTTTCATACTTGATGCTTTTGTGAACAACATGAAAAGGTGCAGAAGGATGGAGGGAGCTGAAGGATTAGTTATGGATATGACTTCTGGGGGTTTGTTTCTTGACCGTGTTAACTACACATCTCTAATGGATGGTTACTTTAAAGCGCGAAAGGAGTCAATTGCTCTTAACTTGGCCCAAGAGATGATGGAGAAAAATATAGGGTTTGATGTTGTTGCATACAATGTCTTGATGAATGGTTTACTGAGGCTTGGGAAGTACGAAGCAAAATCTGTTTGTACTGGAATGAAAGAGTTGGGTTTGGCTCCTGACTGTGCCACATACAATACCATGATTAATGGATTCTGCAGAGAGGGTGACACTGAAAATGCTTTTAAACTCTGGCATGAGATGAAGTGTCAAGAGTTAATTCCAAACTCAAACACTTGCAACATTCTGATACGAAGACTTTGTGATACTGATGAGATAGGAAAAGCAATAGATGTCTTAAATGGAATGGTGGCTGATGGTTCTCTTCCTACATCATTTATTCACAGAATTCTGCTTGATGCTTCTTCAAAGAGTAGAAGAGCTGATTCAATTTTGCAGATGCATCATAAGCTTGTATGTATGGGGCTTAACCTCAATCGGGATGTTTATAATAATCTCATTACTGTCTTGTGTAGGCTAGGTATGACCATGAAAGCTACTTCAGTATTGAAAGAGATGACTGGAGGAGGATTTTTAGCTGATATTGATACCTACAATGCCTTTATATGTGGATATTGCAGAAGCAGCCATATGAAAAGGGCTTTTGCTACTTACTCGCAAATGTTGGCTGAGGGAGTTTCTCCAAATATTGAAACGTACAATCTTCTTTTAGGGGGACTTTCAGGTGCTGGTCTGATGACAAATGCAGAGGAGTTCTTTGGTCAAATGAAGAACAAAGGCTTTGTTCCTAATGCTTCTACATATGACACTTTGGTTTCTGGTCATGGTAAGAAGGGAAATAAAAAGGAAGCTATAAGACTTTATTGTGAAATGGTAAGCAAGGGTTTTGTTCCCAAAACTAGCACCTATAATATCCTTATTAGTGATTTTGCTAAGGCGGGAAAGATGAGCCAAGCTAGGGAGCTTATGAATGAGATGCAGACAAGAGGGACCTCTCCTAACTCTTCAACTTACAACATACTAATCTGTGGCTGGTGTAGGCTATCAAGGCAGCCAGAGCTGGAGAGAAATTTGAAAAAGTCATATCGGGCTGAGGCAAAAAGATTATTAACTGATATGAAAGAAAAAGGGTATGTTCCATGTGAAAGTACCGTTCTATGCATCAGTTCTACCTTTGCTCGACCAGGAAAGAAGGCCGATGCTCAGAGGCTATTGAAGGAACTCTATAACAAAAAGAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1024

Amino Acids

114.04

Weight (kDa)

8.06

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	150 - 179	1e-05	PPR repeat
PPR_2	PF13041	151 - 199	2.7e-14	PPR repeat family
PPR_3	PF13812	209 - 267	8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	217 - 248	2.8e-08	PPR repeat
PPR_2	PF13041	221 - 269	3.3e-17	PPR repeat family
PPR_1	PF12854	253 - 283	5.4e-10	PPR repeat
PPR_2	PF13041	255 - 286	5.8e-07	PPR repeat family
PPR	PF01535	258 - 286	7.8e-06	PPR repeat
PPR_3	PF13812	306 - 356	2.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	311 - 360	4.9e-14	PPR repeat family
PPR_1	PF12854	342 - 375	5e-13	PPR repeat
PPR_2	PF13041	346 - 395	5.6e-14	PPR repeat family
PPR	PF01535	349 - 378	4.4e-07	PPR repeat
PPR_3	PF13812	407 - 460	3.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	417 - 465	1.6e-10	PPR repeat family
TPR_24	PF23276	431 - 549	1.4e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	433 - 539	2.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	440 - 498	1.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	448 - 480	1.2e-08	PPR repeat
PPR_2	PF13041	451 - 500	1.9e-15	PPR repeat family
PPR	PF01535	455 - 483	9.7e-06	PPR repeat
PPR_1	PF12854	483 - 515	7.1e-11	PPR repeat
PPR	PF01535	489 - 519	1.2e-08	PPR repeat
PPR_2	PF13041	493 - 535	6.5e-12	PPR repeat family
PPR_3	PF13812	582 - 638	2.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	594 - 641	7.3e-08	PPR repeat family
PPR_long	PF17177	614 - 760	4e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	629 - 676	1.6e-11	PPR repeat family
PPR_3	PF13812	653 - 707	6.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	659 - 691	5.8e-14	PPR repeat
PPR_2	PF13041	662 - 711	6.5e-17	PPR repeat family
PPR	PF01535	666 - 692	6.2e-09	PPR repeat
PPR_3	PF13812	790 - 847	1.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	803 - 849	4.2e-13	PPR repeat family
PPR_long	PF17177	816 - 950	5.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	837 - 884	9e-11	PPR repeat family
PPR_1	PF12854	868 - 901	1.3e-06	PPR repeat
PPR_2	PF13041	875 - 921	9.7e-11	PPR repeat family
PPR_3	PF13812	896 - 951	2.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	903 - 936	6.9e-07	PPR repeat
PPR_2	PF13041	907 - 956	1e-15	PPR repeat family
PPR	PF01535	910 - 939	4.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14770 AT5G14770 AT5G14770 AT5G14770 AT5G14770
fragaria_vesca	FvH4_7g02371
malus_domestica	MD00G1202300.v1.1 MD00G1202400.v1.1 MD03G1142100.v1.1 MD11G1161100.v1.1 MD11G1161200.v1.1
prunus_persica	Prupe.2G007100_v2.0.a1
pyrus_communis	pycom03g09690 pycom11g13400
rosa_chinensis	RchiOBHm_Chr1g0384651
rosa_laevigata	RLG00000008173 RLG00000026023
rosa_multiflora	Rmu_co8325115.1_g000001 Rmu_sc0012136.1_g000024
rosa_roxburghii	Rroxscaffold_4G00276490
rosa_rugosa	Rorug01G0450400
rosa_samantha	Rh1AG475000 Rh1BG433200 Rh1CG446400 Rh1CG446600 Rh1DG465700
rosa_wichuraiana	Rw1G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	780, 941, 1064, 2316
AccB1I	GGYRCC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	563
AccII	CGCG	1 cut(s)	1825
AciI	CCGC	4 cut(s)	131, 263, 373, 2765
AclWI	GGATC	3 cut(s)	1133, 1146, 1343
AcoI	YGGCCR	2 cut(s)	69, 898
AcsI	RAATTY	4 cut(s)	651, 1525, 2214, 2896
AcuI	CTGAAG	2 cut(s)	1758, 2352
AfaI	GTAC	7 cut(s)	177, 185, 1264, 1937, 1957, 2525, 2977
AfiI	CCNNNNNNNGG	2 cut(s)	2305, 2785
AflIII	ACRYGT	1 cut(s)	191
AhdI	GACNNNNNGTC	1 cut(s)	757
AhlI	ACTAGT	1 cut(s)	577
AjnI	CCWGG	2 cut(s)	1239, 3010
AjuI	GAANNNNNNNTTGG	2 cut(s)	1215, 1247
Alw26I	GTCTC	4 cut(s)	313, 531, 1156, 1395
AlwI	GGATC	3 cut(s)	1133, 1146, 1343
AlwNI	CAGNNNCTG	1 cut(s)	2555
ApeKI	GCWGC	3 cut(s)	976, 2451, 2878
ApoI	RAATTY	4 cut(s)	651, 1525, 2214, 2896
AseI	ATTAAT	1 cut(s)	2013
AspLEI	GCGC	2 cut(s)	1446, 1825
AspS9I	GGNCC	4 cut(s)	825, 875, 1852, 2817
AsuHPI	GGTGA	7 cut(s)	361, 455, 547, 824, 929, 1642, 2045
AvaII	GGWCC	1 cut(s)	2817
AxyI	CCTNAGG	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	2 cut(s)	71, 900
BamHI	GGATCC	1 cut(s)	1138
BanI	GGYRCC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	2128
BbvCI	CCTCAGC	2 cut(s)	2496, 2919
BbvI	GCAGC	3 cut(s)	988, 2463, 2890
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	1241, 3012
BcoDI	GTCTC	4 cut(s)	313, 531, 1156, 1395
BcuI	ACTAGT	1 cut(s)	577
BfaI	CTAG	6 cut(s)	425, 578, 1346, 2345, 2727, 2784
BfmI	CTRYAG	2 cut(s)	115, 2023
BfoI	RGCGCY	1 cut(s)	1447
BisI	GCNGC	4 cut(s)	263, 977, 2452, 2879
BlsI	GCNGC	4 cut(s)	264, 978, 2453, 2880
Bme1390I	CCNGG	2 cut(s)	1241, 3012
Bme18I	GGWCC	1 cut(s)	2817
BmeRI	GACNNNNNGTC	1 cut(s)	757
BmgT120I	GGNCC	4 cut(s)	825, 875, 1852, 2817
BmiI	GGNNCC	4 cut(s)	220, 1140, 1983, 2818
BmrFI	CCNGG	2 cut(s)	1241, 3012
BpiI	GAAGAC	1 cut(s)	2128
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpmI	CTGGAG	2 cut(s)	2409, 2909
Bpu10I	CCTNAGC	3 cut(s)	2496, 2760, 2919
BpuEI	CTTGAG	2 cut(s)	433, 864
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	2 cut(s)	1137, 1143
BsaJI	CCNNGG	2 cut(s)	66, 1197
BsaWI	WCCGGW	1 cut(s)	1627
Bsc4I	CCNNNNNNNGG	2 cut(s)	2305, 2785
Bse1I	ACTGG	3 cut(s)	445, 1963, 2392
Bse21I	CCTNAGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	694
Bse8I	GATNNNNATC	2 cut(s)	1137, 1143
BseBI	CCWGG	2 cut(s)	1241, 3012
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	66, 1197
BseGI	GGATG	8 cut(s)	126, 134, 649, 667, 1138, 1731, 1813, 2314
BseJI	GATNNNNATC	2 cut(s)	1137, 1143
BseLI	CCNNNNNNNGG	2 cut(s)	2305, 2785
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	7 cut(s)	312, 324, 425, 1913, 2487, 2910, 3044
BseNI	ACTGG	3 cut(s)	445, 1963, 2392
BseRI	GAGGAG	2 cut(s)	2406, 2591
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	988, 2463, 2890
BsgI	GTGCAG	2 cut(s)	151, 1738
Bsh1236I	CGCG	1 cut(s)	1825
BshNI	GGYRCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	1628
BslFI	GGGAC	3 cut(s)	764, 2556, 2830
BslI	CCNNNNNNNGG	2 cut(s)	2305, 2785
BsmAI	GTCTC	4 cut(s)	313, 531, 1156, 1395
BsmFI	GGGAC	3 cut(s)	764, 2556, 2830
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	56, 854, 1138, 1348, 1636
Bsp19I	CCATGG	2 cut(s)	66, 1197
BspACI	CCGC	4 cut(s)	131, 263, 373, 2765
BspCNI	CTCAG	7 cut(s)	311, 325, 426, 1914, 2488, 2911, 3043
BspDI	ATCGAT	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	1825
BspHI	TCATGA	1 cut(s)	1494
BspLI	GGNNCC	4 cut(s)	220, 1140, 1983, 2818
BspMAI	CTGCAG	1 cut(s)	2027
BspPI	GGATC	3 cut(s)	1133, 1146, 1343
BspQI	GCTCTTC	2 cut(s)	1198, 2239
BspT107I	GGYRCC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	694
BsrI	ACTGG	3 cut(s)	445, 1963, 2392
BssECI	CCNNGG	2 cut(s)	66, 1197
BssMI	GATC	5 cut(s)	56, 854, 1138, 1348, 1636
BssNAI	GTATAC	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	66, 1197
Bst1107I	GTATAC	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	1241, 3012
Bst4CI	ACNGT	9 cut(s)	119, 457, 472, 755, 971, 1784, 1991, 2332, 2980
Bst6I	CTCTTC	5 cut(s)	533, 1198, 2196, 2239, 2836
BstC8I	GCNNGC	2 cut(s)	1189, 1609
BstDEI	CTNAG	9 cut(s)	298, 333, 434, 1112, 1922, 2496, 2760, 2919, 3030
BstDSI	CCRYGG	2 cut(s)	66, 1197
BstF5I	GGATG	8 cut(s)	126, 134, 649, 667, 1138, 1731, 1813, 2314
BstFNI	CGCG	1 cut(s)	1825
BstH2I	RGCGCY	1 cut(s)	1447
BstHHI	GCGC	2 cut(s)	1446, 1825
BstKTI	GATC	5 cut(s)	59, 857, 1141, 1351, 1639
BstMAI	GTCTC	4 cut(s)	313, 531, 1156, 1395
BstMBI	GATC	5 cut(s)	56, 854, 1138, 1348, 1636
BstMWI	GCNNNNNNNGC	8 cut(s)	218, 509, 1307, 1370, 2275, 2451, 2875, 2884
BstNI	CCWGG	2 cut(s)	1241, 3012
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	1239, 3010
BstSFI	CTRYAG	2 cut(s)	115, 2023
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	1825
BstV1I	GCAGC	3 cut(s)	988, 2463, 2890
BstV2I	GAAGAC	1 cut(s)	2128
BstX2I	RGATCY	2 cut(s)	1138, 1348
BstYI	RGATCY	2 cut(s)	1138, 1348
BstZ17I	GTATAC	1 cut(s)	564
Bsu15I	ATCGAT	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	2 cut(s)	66, 1197
BtsCI	GGATG	8 cut(s)	126, 134, 649, 667, 1138, 1731, 1813, 2314
BtsIMutI	CAGTG	1 cut(s)	2037
Cac8I	GCNNGC	2 cut(s)	1189, 1609
CaiI	CAGNNNCTG	1 cut(s)	2555
CciI	TCATGA	1 cut(s)	1494
CfoI	GCGC	2 cut(s)	1446, 1825
Cfr13I	GGNCC	4 cut(s)	825, 875, 1852, 2817
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	7 cut(s)	176, 184, 1263, 1936, 1956, 2524, 2976
CviQI	GTAC	7 cut(s)	176, 184, 1263, 1936, 1956, 2524, 2976
DdeI	CTNAG	9 cut(s)	298, 333, 434, 1112, 1922, 2496, 2760, 2919, 3030
DpnI	GATC	5 cut(s)	58, 856, 1140, 1350, 1638
DpnII	GATC	5 cut(s)	56, 854, 1138, 1348, 1636
DraI	TTTAAA	3 cut(s)	1183, 1819, 2053
DriI	GACNNNNNGTC	1 cut(s)	757
EaeI	YGGCCR	2 cut(s)	69, 898
Eam1104I	CTCTTC	5 cut(s)	533, 1198, 2196, 2239, 2836
Eam1105I	GACNNNNNGTC	1 cut(s)	757
EarI	CTCTTC	5 cut(s)	533, 1198, 2196, 2239, 2836
Eco130I	CCWWGG	2 cut(s)	66, 1197
Eco47I	GGWCC	1 cut(s)	2817
Eco57I	CTGAAG	2 cut(s)	1758, 2352
Eco81I	CCTNAGG	1 cut(s)	298
EcoO109I	RGGNCCY	2 cut(s)	875, 2817
EcoRI	GAATTC	2 cut(s)	651, 2214
EcoRII	CCWGG	2 cut(s)	1239, 3010
EcoT14I	CCWWGG	2 cut(s)	66, 1197
EcoT22I	ATGCAT	2 cut(s)	2271, 2990
ErhI	CCWWGG	2 cut(s)	66, 1197
FalI	AAGNNNNNCTT	2 cut(s)	1494, 1526
FaqI	GGGAC	3 cut(s)	764, 2556, 2830
FauI	CCCGC	3 cut(s)	138, 380, 2758
FauNDI	CATATG	3 cut(s)	476, 2457, 2629
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	4 cut(s)	263, 977, 2452, 2879
FokI	GGATG	8 cut(s)	113, 121, 656, 674, 1145, 1738, 1820, 2321
Fsp4HI	GCNGC	4 cut(s)	263, 977, 2452, 2879
FspBI	CTAG	6 cut(s)	425, 578, 1346, 2345, 2727, 2784
GlaI	GCGC	2 cut(s)	1445, 1824
GluI	GCNGC	4 cut(s)	263, 977, 2452, 2879
GsuI	CTGGAG	2 cut(s)	2409, 2909
HaeII	RGCGCY	1 cut(s)	1447
HapII	CCGG	1 cut(s)	1628
HhaI	GCGC	2 cut(s)	1446, 1825
Hin6I	GCGC	2 cut(s)	1444, 1823
HinP1I	GCGC	2 cut(s)	1444, 1823
HincII	GTYRAC	1 cut(s)	1789
HindII	GTYRAC	1 cut(s)	1789
HindIII	AAGCTT	3 cut(s)	1337, 1508, 2276
HpaI	GTTAAC	1 cut(s)	1789
HpaII	CCGG	1 cut(s)	1628
HphI	GGTGA	7 cut(s)	361, 455, 547, 824, 929, 1642, 2045
Hpy166II	GTNNAC	7 cut(s)	178, 491, 564, 583, 1702, 1789, 1919
Hpy188I	TCNGA	6 cut(s)	909, 1096, 1661, 2115, 2562, 3033
Hpy8I	GTNNAC	7 cut(s)	178, 491, 564, 583, 1702, 1789, 1919
Hpy99I	CGWCG	1 cut(s)	57
HpyCH4III	ACNGT	9 cut(s)	119, 457, 472, 755, 971, 1784, 1991, 2332, 2980
HpyCH4IV	ACGT	2 cut(s)	1449, 2522
HpyF10VI	GCNNNNNNNGC	8 cut(s)	218, 509, 1307, 1370, 2275, 2451, 2875, 2884
HpyF3I	CTNAG	9 cut(s)	298, 333, 434, 1112, 1922, 2496, 2760, 2919, 3030
HpySE526I	ACGT	2 cut(s)	1449, 2522
HspAI	GCGC	2 cut(s)	1444, 1823
KspAI	GTTAAC	1 cut(s)	1789
Kzo9I	GATC	5 cut(s)	56, 854, 1138, 1348, 1636
LguI	GCTCTTC	2 cut(s)	1198, 2239
LmnI	GCTCC	6 cut(s)	100, 1061, 1630, 1733, 1987, 2788
Lsp1109I	GCAGC	3 cut(s)	988, 2463, 2890
MaeI	CTAG	6 cut(s)	425, 578, 1346, 2345, 2727, 2784
MaeII	ACGT	2 cut(s)	1449, 2522
MaeIII	GTNAC	4 cut(s)	772, 1045, 1811, 2033
MalI	GATC	5 cut(s)	58, 856, 1140, 1350, 1638
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	5 cut(s)	56, 854, 1138, 1348, 1636
MfeI	CAATTG	1 cut(s)	1836
MflI	RGATCY	2 cut(s)	1138, 1348
MhlI	GDGCHC	1 cut(s)	223
MlsI	TGGCCA	2 cut(s)	71, 900
MluNI	TGGCCA	2 cut(s)	71, 900
MlyI	GAGTC	4 cut(s)	424, 841, 1275, 1841
MmeI	TCCRAC	1 cut(s)	1258
Mox20I	TGGCCA	2 cut(s)	71, 900
Mph1103I	ATGCAT	2 cut(s)	2271, 2990
MscI	TGGCCA	2 cut(s)	71, 900
Msp20I	TGGCCA	2 cut(s)	71, 900
MspI	CCGG	1 cut(s)	1628
MspR9I	CCNGG	2 cut(s)	1241, 3012
MunI	CAATTG	1 cut(s)	1836
MvaI	CCWGG	2 cut(s)	1241, 3012
MvnI	CGCG	1 cut(s)	1825
MwoI	GCNNNNNNNGC	8 cut(s)	218, 509, 1307, 1370, 2275, 2451, 2875, 2884
NcoI	CCATGG	2 cut(s)	66, 1197
NdeI	CATATG	3 cut(s)	476, 2457, 2629
NdeII	GATC	5 cut(s)	56, 854, 1138, 1348, 1636
NlaIV	GGNNCC	4 cut(s)	220, 1140, 1983, 2818
NmuCI	GTSAC	1 cut(s)	2033
NsiI	ATGCAT	2 cut(s)	2271, 2990
NspI	RCATGY	1 cut(s)	195
PagI	TCATGA	1 cut(s)	1494
PciI	ACATGT	1 cut(s)	191
PciSI	GCTCTTC	2 cut(s)	1198, 2239
PfeI	GAWTC	8 cut(s)	271, 385, 557, 904, 1172, 1418, 2019, 2252
PkrI	GCNGC	4 cut(s)	264, 978, 2453, 2880
PleI	GAGTC	4 cut(s)	423, 840, 1275, 1840
PpsI	GAGTC	4 cut(s)	423, 840, 1275, 1840
PpuMI	RGGWCCY	1 cut(s)	2817
PscI	ACATGT	1 cut(s)	191
PshBI	ATTAAT	1 cut(s)	2013
PsiI	TTATAA	4 cut(s)	780, 941, 1064, 2316
Psp5II	RGGWCCY	1 cut(s)	2817
Psp6I	CCWGG	2 cut(s)	1239, 3010
PspGI	CCWGG	2 cut(s)	1239, 3010
PspN4I	GGNNCC	4 cut(s)	220, 1140, 1983, 2818
PspPI	GGNCC	4 cut(s)	825, 875, 1852, 2817
PspPPI	RGGWCCY	1 cut(s)	2817
PstI	CTGCAG	1 cut(s)	2027
PstNI	CAGNNNCTG	1 cut(s)	2555
PsuI	RGATCY	2 cut(s)	1138, 1348
RsaI	GTAC	7 cut(s)	177, 185, 1264, 1937, 1957, 2525, 2977
RsaNI	GTAC	7 cut(s)	176, 184, 1263, 1936, 1956, 2524, 2976
SapI	GCTCTTC	2 cut(s)	1198, 2239
SatI	GCNGC	4 cut(s)	263, 977, 2452, 2879
Sau3AI	GATC	5 cut(s)	56, 854, 1138, 1348, 1636
Sau96I	GGNCC	4 cut(s)	825, 875, 1852, 2817
SchI	GAGTC	4 cut(s)	424, 841, 1275, 1841
ScrFI	CCNGG	2 cut(s)	1241, 3012
SduI	GDGCHC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	115, 2023
SinI	GGWCC	1 cut(s)	2817
SmlI	CTYRAG	2 cut(s)	412, 879
SmoI	CTYRAG	2 cut(s)	412, 879
SpeI	ACTAGT	1 cut(s)	577
SsiI	CCGC	4 cut(s)	131, 263, 373, 2765
SspI	AATATT	3 cut(s)	364, 1462, 2515
SspMI	CTAG	6 cut(s)	425, 578, 1346, 2345, 2727, 2784
StyD4I	CCNGG	2 cut(s)	1239, 3010
StyI	CCWWGG	2 cut(s)	66, 1197
TaaI	ACNGT	9 cut(s)	119, 457, 472, 755, 971, 1784, 1991, 2332, 2980
TaiI	ACGT	2 cut(s)	1452, 2525
TaqI	TCGA	3 cut(s)	55, 555, 3007
TatI	WGTACW	3 cut(s)	183, 1262, 1955
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	8 cut(s)	271, 385, 557, 904, 1172, 1418, 2019, 2252
TscAI	CASTG	1 cut(s)	2044
TseFI	GTSAC	1 cut(s)	2033
TseI	GCWGC	3 cut(s)	976, 2451, 2878
Tsp45I	GTSAC	1 cut(s)	2033
TspGWI	ACGGA	1 cut(s)	874
TspRI	CASTG	1 cut(s)	2044
VpaK11BI	GGWCC	1 cut(s)	2817
VspI	ATTAAT	1 cut(s)	2013
XapI	RAATTY	4 cut(s)	651, 1525, 2214, 2896
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	6 cut(s)	425, 578, 1346, 2345, 2727, 2784
Zsp2I	ATGCAT	2 cut(s)	2271, 2990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.