Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14770 AT5G14770 AT5G14770 AT5G14770 AT5G14770 |
| fragaria_vesca | FvH4_7g02371 |
| malus_domestica | MD00G1202300.v1.1 MD00G1202400.v1.1 MD03G1142100.v1.1 MD11G1161100.v1.1 MD11G1161200.v1.1 |
| prunus_persica | Prupe.2G007100_v2.0.a1 |
| pyrus_communis | pycom03g09690 pycom11g13400 |
| rosa_chinensis | RchiOBHm_Chr1g0384651 |
| rosa_laevigata | RLG00000008173 RLG00000026023 |
| rosa_multiflora | Rmu_co8325115.1_g000001 Rmu_sc0012136.1_g000024 |
| rosa_roxburghii | Rroxscaffold_4G00276490 |
| rosa_rugosa | Rorug01G0450400 |
| rosa_samantha | Rh1AG475000 Rh1BG433200 Rh1CG446400 Rh1CG446600 Rh1DG465700 |
| rosa_wichuraiana | Rw1G039760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 233, 356, 1599 |
| Acc36I | ACCTGC | 1 cut(s) | 890 |
| AciI | CCGC | 1 cut(s) | 46 |
| AclWI | GGATC | 2 cut(s) | 425, 438 |
| AcoI | YGGCCR | 1 cut(s) | 1930 |
| AcsI | RAATTY | 5 cut(s) | 646, 817, 911, 1497, 2179 |
| AcuI | CTGAAG | 2 cut(s) | 1044, 1635 |
| AfaI | GTAC | 8 cut(s) | 399, 556, 717, 1097, 1656, 1808, 2260, 2336 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2068 |
| AflIII | ACRYGT | 1 cut(s) | 739 |
| AjnI | CCWGG | 2 cut(s) | 1637, 2293 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 507, 539, 1851, 1883 |
| Alw26I | GTCTC | 3 cut(s) | 177, 448, 1062 |
| AlwI | GGATC | 2 cut(s) | 425, 438 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1694, 1838 |
| AoxI | GGCC | 6 cut(s) | 27, 117, 285, 529, 1134, 1930 |
| ApeKI | GCWGC | 3 cut(s) | 872, 1511, 1734 |
| ApoI | RAATTY | 5 cut(s) | 646, 817, 911, 1497, 2179 |
| AseI | ATTAAT | 2 cut(s) | 1031, 1296 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 622 |
| AspS9I | GGNCC | 4 cut(s) | 117, 286, 1135, 2100 |
| AsuHPI | GGTGA | 5 cut(s) | 116, 646, 818, 1328, 1883 |
| AsuII | TTCGAA | 2 cut(s) | 616, 1373 |
| AvaII | GGWCC | 1 cut(s) | 2100 |
| AxyI | CCTNAGG | 1 cut(s) | 81 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 969, 1002 |
| BalI | TGGCCA | 1 cut(s) | 1932 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 381, 413, 2318, 2350 |
| BauI | CACGAG | 1 cut(s) | 1587 |
| BbsI | GAAGAC | 1 cut(s) | 168 |
| BbvI | GCAGC | 3 cut(s) | 884, 1498, 1746 |
| BccI | CCATC | 8 cut(s) | 406, 826, 878, 1006, 1085, 1141, 1445, 1746 |
| BceAI | ACGGC | 1 cut(s) | 42 |
| BciT130I | CCWGG | 2 cut(s) | 1639, 2295 |
| BcoDI | GTCTC | 3 cut(s) | 177, 448, 1062 |
| BfaI | CTAG | 7 cut(s) | 638, 1439, 1628, 1685, 2010, 2067, 2289 |
| BfmI | CTRYAG | 1 cut(s) | 1306 |
| BfuAI | ACCTGC | 1 cut(s) | 890 |
| BglII | AGATCT | 1 cut(s) | 146 |
| BisI | GCNGC | 4 cut(s) | 46, 873, 1512, 1735 |
| BlpI | GCTNAGC | 1 cut(s) | 632 |
| BlsI | GCNGC | 4 cut(s) | 47, 874, 1513, 1736 |
| BmcAI | AGTACT | 3 cut(s) | 399, 717, 1656 |
| Bme1390I | CCNGG | 2 cut(s) | 1639, 2295 |
| Bme18I | GGWCC | 1 cut(s) | 2100 |
| BmgT120I | GGNCC | 4 cut(s) | 117, 286, 1135, 2100 |
| BmiI | GGNNCC | 3 cut(s) | 432, 1266, 2101 |
| BmrFI | CCNGG | 2 cut(s) | 1639, 2295 |
| BmsI | GCATC | 7 cut(s) | 1539, 1561, 2076, 2170, 2258, 2280, 2299 |
| BpiI | GAAGAC | 1 cut(s) | 168 |
| BpmI | CTGGAG | 2 cut(s) | 1692, 2192 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 632 |
| Bpu14I | TTCGAA | 2 cut(s) | 616, 1373 |
| BsaBI | GATNNNNATC | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 1 cut(s) | 1933 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 729, 759 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2068 |
| Bse1I | ACTGG | 1 cut(s) | 1675 |
| Bse21I | CCTNAGG | 1 cut(s) | 81 |
| Bse8I | GATNNNNATC | 1 cut(s) | 435 |
| BseBI | CCWGG | 2 cut(s) | 1639, 2295 |
| BseDI | CCNNGG | 1 cut(s) | 1933 |
| BseGI | GGATG | 4 cut(s) | 1017, 1096, 2161, 2206 |
| BseJI | GATNNNNATC | 1 cut(s) | 435 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2068 |
| BseMII | CTCAG | 2 cut(s) | 95, 109 |
| BseNI | ACTGG | 1 cut(s) | 1675 |
| BseRI | GAGGAG | 1 cut(s) | 1689 |
| BseXI | GCAGC | 3 cut(s) | 884, 1498, 1746 |
| BsgI | GTGCAG | 2 cut(s) | 726, 1024 |
| BshFI | GGCC | 6 cut(s) | 29, 119, 287, 531, 1136, 1932 |
| BslFI | GGGAC | 4 cut(s) | 707, 1839, 2002, 2113 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2068 |
| BsmAI | GTCTC | 3 cut(s) | 177, 448, 1062 |
| BsmBI | CGTCTC | 1 cut(s) | 177 |
| BsmFI | GGGAC | 4 cut(s) | 707, 1839, 2002, 2113 |
| BsmI | GAATGC | 2 cut(s) | 1301, 1461 |
| BsnI | GGCC | 6 cut(s) | 29, 119, 287, 531, 1136, 1932 |
| Bsp119I | TTCGAA | 2 cut(s) | 616, 1373 |
| Bsp1407I | TGTACA | 1 cut(s) | 2334 |
| Bsp143I | GATC | 3 cut(s) | 146, 430, 922 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 632 |
| BspACI | CCGC | 1 cut(s) | 46 |
| BspANI | GGCC | 6 cut(s) | 29, 119, 287, 531, 1136, 1932 |
| BspCNI | CTCAG | 2 cut(s) | 94, 108 |
| BspHI | TCATGA | 2 cut(s) | 172, 786 |
| BspLI | GGNNCC | 3 cut(s) | 432, 1266, 2101 |
| BspMAI | CTGCAG | 1 cut(s) | 1310 |
| BspMI | ACCTGC | 1 cut(s) | 890 |
| BspPI | GGATC | 2 cut(s) | 425, 438 |
| BspT104I | TTCGAA | 2 cut(s) | 616, 1373 |
| BsrGI | TGTACA | 1 cut(s) | 2334 |
| BsrI | ACTGG | 1 cut(s) | 1675 |
| BssECI | CCNNGG | 1 cut(s) | 1933 |
| BssMI | GATC | 3 cut(s) | 146, 430, 922 |
| BssSI | CACGAG | 1 cut(s) | 1587 |
| Bst2BI | CACGAG | 1 cut(s) | 1587 |
| Bst2UI | CCWGG | 2 cut(s) | 1639, 2295 |
| Bst4CI | ACNGT | 5 cut(s) | 209, 263, 1274, 1937, 2334 |
| Bst6I | CTCTTC | 4 cut(s) | 276, 726, 1854, 2119 |
| BstAUI | TGTACA | 1 cut(s) | 2334 |
| BstBI | TTCGAA | 2 cut(s) | 616, 1373 |
| BstC8I | GCNNGC | 4 cut(s) | 371, 481, 1461, 1625 |
| BstDEI | CTNAG | 7 cut(s) | 81, 95, 603, 632, 688, 1447, 1819 |
| BstDSI | CCRYGG | 1 cut(s) | 1933 |
| BstEII | GGTNACC | 1 cut(s) | 209 |
| BstF5I | GGATG | 4 cut(s) | 1017, 1096, 2161, 2206 |
| BstKTI | GATC | 3 cut(s) | 149, 433, 925 |
| BstMAI | GTCTC | 3 cut(s) | 177, 448, 1062 |
| BstMBI | GATC | 3 cut(s) | 146, 430, 922 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 599, 1558, 1734, 2158, 2167 |
| BstNI | CCWGG | 2 cut(s) | 1639, 2295 |
| BstNSI | RCATGY | 1 cut(s) | 743 |
| BstPI | GGTNACC | 1 cut(s) | 209 |
| BstSCI | CCNGG | 2 cut(s) | 1637, 2293 |
| BstSFI | CTRYAG | 1 cut(s) | 1306 |
| BstV1I | GCAGC | 3 cut(s) | 884, 1498, 1746 |
| BstV2I | GAAGAC | 1 cut(s) | 168 |
| BstX2I | RGATCY | 2 cut(s) | 146, 430 |
| BstYI | RGATCY | 2 cut(s) | 146, 430 |
| Bsu36I | CCTNAGG | 1 cut(s) | 81 |
| BsuRI | GGCC | 6 cut(s) | 29, 119, 287, 531, 1136, 1932 |
| BtgI | CCRYGG | 1 cut(s) | 1933 |
| BtsCI | GGATG | 4 cut(s) | 1017, 1096, 2161, 2206 |
| BtsIMutI | CAGTG | 1 cut(s) | 1320 |
| BveI | ACCTGC | 1 cut(s) | 890 |
| Cac8I | GCNNGC | 4 cut(s) | 371, 481, 1461, 1625 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1694, 1838 |
| CciI | TCATGA | 2 cut(s) | 172, 786 |
| Cfr13I | GGNCC | 4 cut(s) | 117, 286, 1135, 2100 |
| Csp6I | GTAC | 8 cut(s) | 398, 555, 716, 1096, 1655, 1807, 2259, 2335 |
| CviQI | GTAC | 8 cut(s) | 398, 555, 716, 1096, 1655, 1807, 2259, 2335 |
| DdeI | CTNAG | 7 cut(s) | 81, 95, 603, 632, 688, 1447, 1819 |
| DpnI | GATC | 3 cut(s) | 148, 432, 924 |
| DpnII | GATC | 3 cut(s) | 146, 430, 922 |
| DraI | TTTAAA | 2 cut(s) | 1102, 1336 |
| EaeI | YGGCCR | 1 cut(s) | 1930 |
| Eam1104I | CTCTTC | 4 cut(s) | 276, 726, 1854, 2119 |
| EarI | CTCTTC | 4 cut(s) | 276, 726, 1854, 2119 |
| Eco47I | GGWCC | 1 cut(s) | 2100 |
| Eco57I | CTGAAG | 2 cut(s) | 1044, 1635 |
| Eco81I | CCTNAGG | 1 cut(s) | 81 |
| Eco91I | GGTNACC | 1 cut(s) | 209 |
| EcoO109I | RGGNCCY | 2 cut(s) | 286, 2100 |
| EcoO65I | GGTNACC | 1 cut(s) | 209 |
| EcoRII | CCWGG | 2 cut(s) | 1637, 2293 |
| EcoT22I | ATGCAT | 3 cut(s) | 1303, 1554, 2273 |
| Esp3I | CGTCTC | 1 cut(s) | 177 |
| FaqI | GGGAC | 4 cut(s) | 707, 1839, 2002, 2113 |
| FauNDI | CATATG | 2 cut(s) | 1912, 2351 |
| Fnu4HI | GCNGC | 4 cut(s) | 46, 873, 1512, 1735 |
| FokI | GGATG | 4 cut(s) | 1024, 1103, 2148, 2213 |
| Fsp4HI | GCNGC | 4 cut(s) | 46, 873, 1512, 1735 |
| FspBI | CTAG | 7 cut(s) | 638, 1439, 1628, 1685, 2010, 2067, 2289 |
| GluI | GCNGC | 4 cut(s) | 46, 873, 1512, 1735 |
| GsuI | CTGGAG | 2 cut(s) | 1692, 2192 |
| HaeIII | GGCC | 6 cut(s) | 29, 119, 287, 531, 1136, 1932 |
| HincII | GTYRAC | 1 cut(s) | 1072 |
| HindII | GTYRAC | 1 cut(s) | 1072 |
| HindIII | AAGCTT | 3 cut(s) | 629, 1208, 1559 |
| HinfI | GANTC | 7 cut(s) | 54, 124, 196, 464, 573, 710, 1115 |
| HpaI | GTTAAC | 1 cut(s) | 1072 |
| HphI | GGTGA | 5 cut(s) | 116, 646, 818, 1328, 1883 |
| Hpy166II | GTNNAC | 3 cut(s) | 905, 988, 1072 |
| Hpy188I | TCNGA | 6 cut(s) | 153, 201, 388, 1743, 1845, 2316 |
| Hpy8I | GTNNAC | 3 cut(s) | 905, 988, 1072 |
| HpyAV | CCTTC | 7 cut(s) | 15, 515, 1002, 1019, 2273, 2296, 2320 |
| HpyCH4III | ACNGT | 5 cut(s) | 209, 263, 1274, 1937, 2334 |
| HpyCH4IV | ACGT | 1 cut(s) | 1805 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 599, 1558, 1734, 2158, 2167 |
| HpyF3I | CTNAG | 7 cut(s) | 81, 95, 603, 632, 688, 1447, 1819 |
| HpySE526I | ACGT | 1 cut(s) | 1805 |
| KspAI | GTTAAC | 1 cut(s) | 1072 |
| Kzo9I | GATC | 3 cut(s) | 146, 430, 922 |
| LmnI | GCTCC | 3 cut(s) | 353, 1270, 2071 |
| Lsp1109I | GCAGC | 3 cut(s) | 884, 1498, 1746 |
| LweI | GCATC | 7 cut(s) | 1539, 1561, 2076, 2170, 2258, 2280, 2299 |
| MaeI | CTAG | 7 cut(s) | 638, 1439, 1628, 1685, 2010, 2067, 2289 |
| MaeII | ACGT | 1 cut(s) | 1805 |
| MaeIII | GTNAC | 4 cut(s) | 209, 757, 1316, 1388 |
| MalI | GATC | 3 cut(s) | 148, 432, 924 |
| MboI | GATC | 3 cut(s) | 146, 430, 922 |
| MboII | GAAGA | 8 cut(s) | 173, 293, 743, 802, 1028, 1871, 1891, 2106 |
| MfeI | CAATTG | 1 cut(s) | 1119 |
| MflI | RGATCY | 2 cut(s) | 146, 430 |
| MlsI | TGGCCA | 1 cut(s) | 1932 |
| MluNI | TGGCCA | 1 cut(s) | 1932 |
| MlyI | GAGTC | 3 cut(s) | 133, 567, 1124 |
| MmeI | TCCRAC | 1 cut(s) | 550 |
| Mox20I | TGGCCA | 1 cut(s) | 1932 |
| Mph1103I | ATGCAT | 3 cut(s) | 1303, 1554, 2273 |
| MroXI | GAANNNNTTC | 1 cut(s) | 622 |
| MscI | TGGCCA | 1 cut(s) | 1932 |
| Msp20I | TGGCCA | 1 cut(s) | 1932 |
| MspR9I | CCNGG | 2 cut(s) | 1639, 2295 |
| MunI | CAATTG | 1 cut(s) | 1119 |
| Mva1269I | GAATGC | 2 cut(s) | 1301, 1461 |
| MvaI | CCWGG | 2 cut(s) | 1639, 2295 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 599, 1558, 1734, 2158, 2167 |
| NdeI | CATATG | 2 cut(s) | 1912, 2351 |
| NdeII | GATC | 3 cut(s) | 146, 430, 922 |
| NlaIV | GGNNCC | 3 cut(s) | 432, 1266, 2101 |
| NmuCI | GTSAC | 2 cut(s) | 1316, 1388 |
| NsiI | ATGCAT | 3 cut(s) | 1303, 1554, 2273 |
| NspI | RCATGY | 1 cut(s) | 743 |
| NspV | TTCGAA | 2 cut(s) | 616, 1373 |
| PagI | TCATGA | 2 cut(s) | 172, 786 |
| PciI | ACATGT | 1 cut(s) | 739 |
| PctI | GAATGC | 2 cut(s) | 1301, 1461 |
| PdmI | GAANNNNTTC | 1 cut(s) | 622 |
| PfeI | GAWTC | 4 cut(s) | 54, 196, 464, 710 |
| PkrI | GCNGC | 4 cut(s) | 47, 874, 1513, 1736 |
| PleI | GAGTC | 3 cut(s) | 132, 567, 1123 |
| PpsI | GAGTC | 3 cut(s) | 132, 567, 1123 |
| PpuMI | RGGWCCY | 1 cut(s) | 2100 |
| PscI | ACATGT | 1 cut(s) | 739 |
| PshBI | ATTAAT | 2 cut(s) | 1031, 1296 |
| PsiI | TTATAA | 3 cut(s) | 233, 356, 1599 |
| Psp5II | RGGWCCY | 1 cut(s) | 2100 |
| Psp6I | CCWGG | 2 cut(s) | 1637, 2293 |
| PspEI | GGTNACC | 1 cut(s) | 209 |
| PspGI | CCWGG | 2 cut(s) | 1637, 2293 |
| PspN4I | GGNNCC | 3 cut(s) | 432, 1266, 2101 |
| PspPI | GGNCC | 4 cut(s) | 117, 286, 1135, 2100 |
| PspPPI | RGGWCCY | 1 cut(s) | 2100 |
| PstI | CTGCAG | 1 cut(s) | 1310 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1694, 1838 |
| PsuI | RGATCY | 2 cut(s) | 146, 430 |
| RsaI | GTAC | 8 cut(s) | 399, 556, 717, 1097, 1656, 1808, 2260, 2336 |
| RsaNI | GTAC | 8 cut(s) | 398, 555, 716, 1096, 1655, 1807, 2259, 2335 |
| SatI | GCNGC | 4 cut(s) | 46, 873, 1512, 1735 |
| Sau3AI | GATC | 3 cut(s) | 146, 430, 922 |
| Sau96I | GGNCC | 4 cut(s) | 117, 286, 1135, 2100 |
| ScaI | AGTACT | 3 cut(s) | 399, 717, 1656 |
| SchI | GAGTC | 3 cut(s) | 133, 567, 1124 |
| ScrFI | CCNGG | 2 cut(s) | 1639, 2295 |
| SfaNI | GCATC | 7 cut(s) | 1539, 1561, 2076, 2170, 2258, 2280, 2299 |
| SfcI | CTRYAG | 1 cut(s) | 1306 |
| SfuI | TTCGAA | 2 cut(s) | 616, 1373 |
| SinI | GGWCC | 1 cut(s) | 2100 |
| SsiI | CCGC | 1 cut(s) | 46 |
| SspI | AATATT | 1 cut(s) | 754 |
| SspMI | CTAG | 7 cut(s) | 638, 1439, 1628, 1685, 2010, 2067, 2289 |
| StyD4I | CCNGG | 2 cut(s) | 1637, 2293 |
| TaaI | ACNGT | 5 cut(s) | 209, 263, 1274, 1937, 2334 |
| TaiI | ACGT | 1 cut(s) | 1808 |
| TaqI | TCGA | 4 cut(s) | 616, 1373, 1379, 2266 |
| TatI | WGTACW | 5 cut(s) | 397, 554, 715, 1654, 2334 |
| TauI | GCSGC | 1 cut(s) | 48 |
| TfiI | GAWTC | 4 cut(s) | 54, 196, 464, 710 |
| TscAI | CASTG | 1 cut(s) | 1327 |
| TseFI | GTSAC | 2 cut(s) | 1316, 1388 |
| TseI | GCWGC | 3 cut(s) | 872, 1511, 1734 |
| Tsp45I | GTSAC | 2 cut(s) | 1316, 1388 |
| TspRI | CASTG | 1 cut(s) | 1327 |
| VpaK11BI | GGWCC | 1 cut(s) | 2100 |
| VspI | ATTAAT | 2 cut(s) | 1031, 1296 |
| XapI | RAATTY | 5 cut(s) | 646, 817, 911, 1497, 2179 |
| XceI | RCATGY | 1 cut(s) | 743 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1940 |
| XmnI | GAANNNNTTC | 1 cut(s) | 622 |
| XspI | CTAG | 7 cut(s) | 638, 1439, 1628, 1685, 2010, 2067, 2289 |
| ZrmI | AGTACT | 3 cut(s) | 399, 717, 1656 |
| Zsp2I | ATGCAT | 3 cut(s) | 1303, 1554, 2273 |