Prupe.2G007100_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
676722 .. 679983
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G007100.1

Sequence Viewer

Length: 2355 bp
ATGCCTTCTTTTCTATGCGAAATCACGGCCTTGTTCCTCTTTTGCCGCTTTGGAATCGGCTTCTTTACCAATTCAATGCCTCAGGTTTTGTTTCTCAGCACGGGTGATTTTGTAAGGGCCAAGAGTCTTATAGATGAGATGTTGAGATCTCGGAGATATGAAGACAGCCCTCATGATGAAAGAGACGATGACCAGAATCAGACTGACGGTAACCCTTTGAAACCAAACCTTATAACACACACCACACTCATTAGTTCTTACTGTAAGCAGAAAGGACTTGAAGAGGCCCTGTCTTTGTATGAGGAAATGGTTATGAATGGCATTTATCCTGATGTAGTAATTTATAGCTCCATTATAAATGGTCTTTGCAAGCATGGGAGGTTATCAGAAGCCAAAGTACTTTTAAGGGAGATGGAGAAAATGGGTGTGGATCCTAATCATGTCTCCTATACTACCCTTGTTGATTCCTTGTTTAAGGCAGGCTCTTTCATGGAAGCTCTTACCCTTCAAAGCCAAATGGTTGTTCGTGGCCTTGTTTTTGATATAGTAATCTGTACTGCTTTAGTGGTTGGACTCTTTAAGGTTGGGAAAGCTGATGAGGCTAAGACTTTTTTTCGAACAATTTCAAAGCTTAGCCTAGTTCCAAATTCTATCACCTACTCTGCATTGATAAGTGGGCTTTGCAACTTAGGGGACATGAATAGTGCAGAATCAGTACTTAAAGAAATGGAAGAGAAACATGTTCTCCCGAATATTGTTACTTATTCTGCAATCATAAATGGCTTCATGAAGAAAGGAAAGGTTGGTGAGGCTATGAATTTATTGAGGACGATGGTGCAACAAAATATCCTGCCAAATGCTTTTGTGTATGCAGCACTAATTGATGGGTGCTTTAAGGCAGGTAAACAAGAATTTGCTCTTGATCTTTACAAGGAAATGAAAATGGGAGGATTGGAGGAAAACAATTTCATACTTGATACTTTTGTGAACAACAAGAAAAAGTGCAGAAGGATGGAAGAAGCTGAAGGATTAATTATGGATATGACTTCTGGGTTGTCTCTTGATTGTGTTAACTACACATCTCTAATGGATGGGTACTTTAAAGCACGAAAGGAGTCAATTGCTCTTAACTTGGCCCAAGAGATGATGGAGAAAAATATAGGGTTTGATGTTGTTGCATACAATGTCTTAATGAATGGTCTGTTGAAGCTTGGGAAATATGAAGCAAAATCTGTCTGTATTGGAATGAAAGAGTTGGGTTTGGCTCCTGACTGTGCCACATACAATACCATGATTAATGCATTCTGCAGAGAGGGTGACACTGAAAATGCTTTTAAACTCTGGCATGAGATGAAGTGTCAAGGGTTAATTTCGAACTCGATAACTTGTGACATTCTGTTAAGAGGACTTTGTGATAAAAATGAGATTGAAAAAGCACTAGATGTCTTAGATGGAATGCTGGCTGTTGGTTTTCTCCTTACCTCATTTACTCATAGAATTTTGCTTTATGCTGCTTCAAAGAGTGGGAGAGCTGATACAATTTTGCAGATGCATCATAAGCTTGTAAATATGGGGCTTAACCCCACTCGTGATGTTTATAACAATCTCATCACTATCTTATGCAGGCTAGGAATGACCAGGAAAGCTACTTCAGTACTGAAAGATATGACTGGAGGAGGATTTCTAGCAGATACTGATACTTACAATGCCCTTATATGTGGATATTGCATAAGCAGCCATCTGAAAAGGGCTTTTGCTACATACTCGCAAATGTTGGCTGTGGGAGTTTCTCCAAGTATTGAAACGTACAATTTTCTCTTAGGGGGACTTTCAGGTGCTGGTCTGATGACAAAGGCAGAAGAGTTATTTGGTGAAATGAAGAATAGAGGCTTTGTTCCTAATGCCTCTACATATGATATTTTGGTTTCTGGCCACGGTAAGATTGGAAATAAAAAGGAAGCTATAAGACTTTATTGTGAAATGGTAGGGACAGGTTTTGTTCCCAGAACTAGCACCTATAATGTTCTTATTAGTGATTTTGCTAAAGTGGGAAAGATGAGCCAAGCTAGGGAGCTTATGAATGAGATGCAGACAAGGGGGACCTCTCCTAACTCTTCAACTTACAACATACTAATCTGTGGCTGGTGTAAGCTATCAAAGCATCCAGAGCTGGAGAGGAATTTGAAAAGGTCATATCGGGATGAGGCGAAAAGATTATTAACTGATATGAATGAGAAAGGGTATGTTCCATGTGAAAGTACCCTTCGATGCATCAGTTCTACCTTTGCTAGACCAGGAAAGAAGGCTGATGCTCGGAGGCTATTGAAGGAACTGTACATAAAAAAGAACATATGA

Protein Analysis

785

Amino Acids

87.44

Weight (kDa)

8.27

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 233, 356, 1599
Acc36I ACCTGC 1 cut(s) 890
AciI CCGC 1 cut(s) 46
AclWI GGATC 2 cut(s) 425, 438
AcoI YGGCCR 1 cut(s) 1930
AcsI RAATTY 5 cut(s) 646, 817, 911, 1497, 2179
AcuI CTGAAG 2 cut(s) 1044, 1635
AfaI GTAC 8 cut(s) 399, 556, 717, 1097, 1656, 1808, 2260, 2336
AfiI CCNNNNNNNGG 1 cut(s) 2068
AflIII ACRYGT 1 cut(s) 739
AjnI CCWGG 2 cut(s) 1637, 2293
AjuI GAANNNNNNNTTGG 4 cut(s) 507, 539, 1851, 1883
Alw26I GTCTC 3 cut(s) 177, 448, 1062
AlwI GGATC 2 cut(s) 425, 438
AlwNI CAGNNNCTG 2 cut(s) 1694, 1838
AoxI GGCC 6 cut(s) 27, 117, 285, 529, 1134, 1930
ApeKI GCWGC 3 cut(s) 872, 1511, 1734
ApoI RAATTY 5 cut(s) 646, 817, 911, 1497, 2179
AseI ATTAAT 2 cut(s) 1031, 1296
Asp700I GAANNNNTTC 1 cut(s) 622
AspS9I GGNCC 4 cut(s) 117, 286, 1135, 2100
AsuHPI GGTGA 5 cut(s) 116, 646, 818, 1328, 1883
AsuII TTCGAA 2 cut(s) 616, 1373
AvaII GGWCC 1 cut(s) 2100
AxyI CCTNAGG 1 cut(s) 81
BaeI ACNNNNGTAYC 2 cut(s) 969, 1002
BalI TGGCCA 1 cut(s) 1932
BamHI GGATCC 1 cut(s) 430
BarI GAAGNNNNNNTAC 4 cut(s) 381, 413, 2318, 2350
BauI CACGAG 1 cut(s) 1587
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 884, 1498, 1746
BccI CCATC 8 cut(s) 406, 826, 878, 1006, 1085, 1141, 1445, 1746
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 1639, 2295
BcoDI GTCTC 3 cut(s) 177, 448, 1062
BfaI CTAG 7 cut(s) 638, 1439, 1628, 1685, 2010, 2067, 2289
BfmI CTRYAG 1 cut(s) 1306
BfuAI ACCTGC 1 cut(s) 890
BglII AGATCT 1 cut(s) 146
BisI GCNGC 4 cut(s) 46, 873, 1512, 1735
BlpI GCTNAGC 1 cut(s) 632
BlsI GCNGC 4 cut(s) 47, 874, 1513, 1736
BmcAI AGTACT 3 cut(s) 399, 717, 1656
Bme1390I CCNGG 2 cut(s) 1639, 2295
Bme18I GGWCC 1 cut(s) 2100
BmgT120I GGNCC 4 cut(s) 117, 286, 1135, 2100
BmiI GGNNCC 3 cut(s) 432, 1266, 2101
BmrFI CCNGG 2 cut(s) 1639, 2295
BmsI GCATC 7 cut(s) 1539, 1561, 2076, 2170, 2258, 2280, 2299
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 2 cut(s) 1692, 2192
Bpu1102I GCTNAGC 1 cut(s) 632
Bpu14I TTCGAA 2 cut(s) 616, 1373
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 1933
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 2068
Bse1I ACTGG 1 cut(s) 1675
Bse21I CCTNAGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 2 cut(s) 1639, 2295
BseDI CCNNGG 1 cut(s) 1933
BseGI GGATG 4 cut(s) 1017, 1096, 2161, 2206
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 2068
BseMII CTCAG 2 cut(s) 95, 109
BseNI ACTGG 1 cut(s) 1675
BseRI GAGGAG 1 cut(s) 1689
BseXI GCAGC 3 cut(s) 884, 1498, 1746
BsgI GTGCAG 2 cut(s) 726, 1024
BshFI GGCC 6 cut(s) 29, 119, 287, 531, 1136, 1932
BslFI GGGAC 4 cut(s) 707, 1839, 2002, 2113
BslI CCNNNNNNNGG 1 cut(s) 2068
BsmAI GTCTC 3 cut(s) 177, 448, 1062
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 4 cut(s) 707, 1839, 2002, 2113
BsmI GAATGC 2 cut(s) 1301, 1461
BsnI GGCC 6 cut(s) 29, 119, 287, 531, 1136, 1932
Bsp119I TTCGAA 2 cut(s) 616, 1373
Bsp1407I TGTACA 1 cut(s) 2334
Bsp143I GATC 3 cut(s) 146, 430, 922
Bsp1720I GCTNAGC 1 cut(s) 632
BspACI CCGC 1 cut(s) 46
BspANI GGCC 6 cut(s) 29, 119, 287, 531, 1136, 1932
BspCNI CTCAG 2 cut(s) 94, 108
BspHI TCATGA 2 cut(s) 172, 786
BspLI GGNNCC 3 cut(s) 432, 1266, 2101
BspMAI CTGCAG 1 cut(s) 1310
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 2 cut(s) 425, 438
BspT104I TTCGAA 2 cut(s) 616, 1373
BsrGI TGTACA 1 cut(s) 2334
BsrI ACTGG 1 cut(s) 1675
BssECI CCNNGG 1 cut(s) 1933
BssMI GATC 3 cut(s) 146, 430, 922
BssSI CACGAG 1 cut(s) 1587
Bst2BI CACGAG 1 cut(s) 1587
Bst2UI CCWGG 2 cut(s) 1639, 2295
Bst4CI ACNGT 5 cut(s) 209, 263, 1274, 1937, 2334
Bst6I CTCTTC 4 cut(s) 276, 726, 1854, 2119
BstAUI TGTACA 1 cut(s) 2334
BstBI TTCGAA 2 cut(s) 616, 1373
BstC8I GCNNGC 4 cut(s) 371, 481, 1461, 1625
BstDEI CTNAG 7 cut(s) 81, 95, 603, 632, 688, 1447, 1819
BstDSI CCRYGG 1 cut(s) 1933
BstEII GGTNACC 1 cut(s) 209
BstF5I GGATG 4 cut(s) 1017, 1096, 2161, 2206
BstKTI GATC 3 cut(s) 149, 433, 925
BstMAI GTCTC 3 cut(s) 177, 448, 1062
BstMBI GATC 3 cut(s) 146, 430, 922
BstMWI GCNNNNNNNGC 5 cut(s) 599, 1558, 1734, 2158, 2167
BstNI CCWGG 2 cut(s) 1639, 2295
BstNSI RCATGY 1 cut(s) 743
BstPI GGTNACC 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 1637, 2293
BstSFI CTRYAG 1 cut(s) 1306
BstV1I GCAGC 3 cut(s) 884, 1498, 1746
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 2 cut(s) 146, 430
BstYI RGATCY 2 cut(s) 146, 430
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 6 cut(s) 29, 119, 287, 531, 1136, 1932
BtgI CCRYGG 1 cut(s) 1933
BtsCI GGATG 4 cut(s) 1017, 1096, 2161, 2206
BtsIMutI CAGTG 1 cut(s) 1320
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 4 cut(s) 371, 481, 1461, 1625
CaiI CAGNNNCTG 2 cut(s) 1694, 1838
CciI TCATGA 2 cut(s) 172, 786
Cfr13I GGNCC 4 cut(s) 117, 286, 1135, 2100
Csp6I GTAC 8 cut(s) 398, 555, 716, 1096, 1655, 1807, 2259, 2335
CviQI GTAC 8 cut(s) 398, 555, 716, 1096, 1655, 1807, 2259, 2335
DdeI CTNAG 7 cut(s) 81, 95, 603, 632, 688, 1447, 1819
DpnI GATC 3 cut(s) 148, 432, 924
DpnII GATC 3 cut(s) 146, 430, 922
DraI TTTAAA 2 cut(s) 1102, 1336
EaeI YGGCCR 1 cut(s) 1930
Eam1104I CTCTTC 4 cut(s) 276, 726, 1854, 2119
EarI CTCTTC 4 cut(s) 276, 726, 1854, 2119
Eco47I GGWCC 1 cut(s) 2100
Eco57I CTGAAG 2 cut(s) 1044, 1635
Eco81I CCTNAGG 1 cut(s) 81
Eco91I GGTNACC 1 cut(s) 209
EcoO109I RGGNCCY 2 cut(s) 286, 2100
EcoO65I GGTNACC 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 1637, 2293
EcoT22I ATGCAT 3 cut(s) 1303, 1554, 2273
Esp3I CGTCTC 1 cut(s) 177
FaqI GGGAC 4 cut(s) 707, 1839, 2002, 2113
FauNDI CATATG 2 cut(s) 1912, 2351
Fnu4HI GCNGC 4 cut(s) 46, 873, 1512, 1735
FokI GGATG 4 cut(s) 1024, 1103, 2148, 2213
Fsp4HI GCNGC 4 cut(s) 46, 873, 1512, 1735
FspBI CTAG 7 cut(s) 638, 1439, 1628, 1685, 2010, 2067, 2289
GluI GCNGC 4 cut(s) 46, 873, 1512, 1735
GsuI CTGGAG 2 cut(s) 1692, 2192
HaeIII GGCC 6 cut(s) 29, 119, 287, 531, 1136, 1932
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HindIII AAGCTT 3 cut(s) 629, 1208, 1559
HinfI GANTC 7 cut(s) 54, 124, 196, 464, 573, 710, 1115
HpaI GTTAAC 1 cut(s) 1072
HphI GGTGA 5 cut(s) 116, 646, 818, 1328, 1883
Hpy166II GTNNAC 3 cut(s) 905, 988, 1072
Hpy188I TCNGA 6 cut(s) 153, 201, 388, 1743, 1845, 2316
Hpy8I GTNNAC 3 cut(s) 905, 988, 1072
HpyAV CCTTC 7 cut(s) 15, 515, 1002, 1019, 2273, 2296, 2320
HpyCH4III ACNGT 5 cut(s) 209, 263, 1274, 1937, 2334
HpyCH4IV ACGT 1 cut(s) 1805
HpyF10VI GCNNNNNNNGC 5 cut(s) 599, 1558, 1734, 2158, 2167
HpyF3I CTNAG 7 cut(s) 81, 95, 603, 632, 688, 1447, 1819
HpySE526I ACGT 1 cut(s) 1805
KspAI GTTAAC 1 cut(s) 1072
Kzo9I GATC 3 cut(s) 146, 430, 922
LmnI GCTCC 3 cut(s) 353, 1270, 2071
Lsp1109I GCAGC 3 cut(s) 884, 1498, 1746
LweI GCATC 7 cut(s) 1539, 1561, 2076, 2170, 2258, 2280, 2299
MaeI CTAG 7 cut(s) 638, 1439, 1628, 1685, 2010, 2067, 2289
MaeII ACGT 1 cut(s) 1805
MaeIII GTNAC 4 cut(s) 209, 757, 1316, 1388
MalI GATC 3 cut(s) 148, 432, 924
MboI GATC 3 cut(s) 146, 430, 922
MboII GAAGA 8 cut(s) 173, 293, 743, 802, 1028, 1871, 1891, 2106
MfeI CAATTG 1 cut(s) 1119
MflI RGATCY 2 cut(s) 146, 430
MlsI TGGCCA 1 cut(s) 1932
MluNI TGGCCA 1 cut(s) 1932
MlyI GAGTC 3 cut(s) 133, 567, 1124
MmeI TCCRAC 1 cut(s) 550
Mox20I TGGCCA 1 cut(s) 1932
Mph1103I ATGCAT 3 cut(s) 1303, 1554, 2273
MroXI GAANNNNTTC 1 cut(s) 622
MscI TGGCCA 1 cut(s) 1932
Msp20I TGGCCA 1 cut(s) 1932
MspR9I CCNGG 2 cut(s) 1639, 2295
MunI CAATTG 1 cut(s) 1119
Mva1269I GAATGC 2 cut(s) 1301, 1461
MvaI CCWGG 2 cut(s) 1639, 2295
MwoI GCNNNNNNNGC 5 cut(s) 599, 1558, 1734, 2158, 2167
NdeI CATATG 2 cut(s) 1912, 2351
NdeII GATC 3 cut(s) 146, 430, 922
NlaIV GGNNCC 3 cut(s) 432, 1266, 2101
NmuCI GTSAC 2 cut(s) 1316, 1388
NsiI ATGCAT 3 cut(s) 1303, 1554, 2273
NspI RCATGY 1 cut(s) 743
NspV TTCGAA 2 cut(s) 616, 1373
PagI TCATGA 2 cut(s) 172, 786
PciI ACATGT 1 cut(s) 739
PctI GAATGC 2 cut(s) 1301, 1461
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 4 cut(s) 54, 196, 464, 710
PkrI GCNGC 4 cut(s) 47, 874, 1513, 1736
PleI GAGTC 3 cut(s) 132, 567, 1123
PpsI GAGTC 3 cut(s) 132, 567, 1123
PpuMI RGGWCCY 1 cut(s) 2100
PscI ACATGT 1 cut(s) 739
PshBI ATTAAT 2 cut(s) 1031, 1296
PsiI TTATAA 3 cut(s) 233, 356, 1599
Psp5II RGGWCCY 1 cut(s) 2100
Psp6I CCWGG 2 cut(s) 1637, 2293
PspEI GGTNACC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 1637, 2293
PspN4I GGNNCC 3 cut(s) 432, 1266, 2101
PspPI GGNCC 4 cut(s) 117, 286, 1135, 2100
PspPPI RGGWCCY 1 cut(s) 2100
PstI CTGCAG 1 cut(s) 1310
PstNI CAGNNNCTG 2 cut(s) 1694, 1838
PsuI RGATCY 2 cut(s) 146, 430
RsaI GTAC 8 cut(s) 399, 556, 717, 1097, 1656, 1808, 2260, 2336
RsaNI GTAC 8 cut(s) 398, 555, 716, 1096, 1655, 1807, 2259, 2335
SatI GCNGC 4 cut(s) 46, 873, 1512, 1735
Sau3AI GATC 3 cut(s) 146, 430, 922
Sau96I GGNCC 4 cut(s) 117, 286, 1135, 2100
ScaI AGTACT 3 cut(s) 399, 717, 1656
SchI GAGTC 3 cut(s) 133, 567, 1124
ScrFI CCNGG 2 cut(s) 1639, 2295
SfaNI GCATC 7 cut(s) 1539, 1561, 2076, 2170, 2258, 2280, 2299
SfcI CTRYAG 1 cut(s) 1306
SfuI TTCGAA 2 cut(s) 616, 1373
SinI GGWCC 1 cut(s) 2100
SsiI CCGC 1 cut(s) 46
SspI AATATT 1 cut(s) 754
SspMI CTAG 7 cut(s) 638, 1439, 1628, 1685, 2010, 2067, 2289
StyD4I CCNGG 2 cut(s) 1637, 2293
TaaI ACNGT 5 cut(s) 209, 263, 1274, 1937, 2334
TaiI ACGT 1 cut(s) 1808
TaqI TCGA 4 cut(s) 616, 1373, 1379, 2266
TatI WGTACW 5 cut(s) 397, 554, 715, 1654, 2334
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 4 cut(s) 54, 196, 464, 710
TscAI CASTG 1 cut(s) 1327
TseFI GTSAC 2 cut(s) 1316, 1388
TseI GCWGC 3 cut(s) 872, 1511, 1734
Tsp45I GTSAC 2 cut(s) 1316, 1388
TspRI CASTG 1 cut(s) 1327
VpaK11BI GGWCC 1 cut(s) 2100
VspI ATTAAT 2 cut(s) 1031, 1296
XapI RAATTY 5 cut(s) 646, 817, 911, 1497, 2179
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 1940
XmnI GAANNNNTTC 1 cut(s) 622
XspI CTAG 7 cut(s) 638, 1439, 1628, 1685, 2010, 2067, 2289
ZrmI AGTACT 3 cut(s) 399, 717, 1656
Zsp2I ATGCAT 3 cut(s) 1303, 1554, 2273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.