Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8325115.1

Orthogroup ID

OG0006142

Physical Location & Seq

Genomic Coordinates Reverse (-)

80 .. 886

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8325115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgcatcagaagcttgtaagtatggggcttgacctcgatcatgatgtttataataatctcatcactatcttatgtaggctgggaatgaccaggaaggccactacagtattagaagagatgactggaagaggatttttagctgataccattacttacaatgcccttatacgtggatatggtatgagcagccatctaaaaagggcttttgctacacactcaaagatgctggctgagggagtttctccaaatattgaaacgtacaatattcttttaggggtcctttcaggtgctggtttgatgacaaaggcagatgaattatttagtgaaatgaagaacataggctttcttcctaatgcttccacatatgatatattggtttccggctatggtaagattggaaataagaaggaagccataaggcgttattgtgaaatggtaagcaaaagttttgttcccaatactagcacctacaatgtgcttattagtgattttgctaaggtgggaaagatgagccaagctagggagcttatgaatgagatgcaggcaaggggtgcctgtcctaattcttcaacatacagcatactaatctgtggctggtgtaagctatcaaagcagccagaggtggagaagaagttgcgaaagtcataccgagctgaggcaaagagattattagccgagatgaatgagaaagggtatgttccaggtgaaagtaccctttcatctatcagttctacctttgctagaccaggaaagaaggctgatgctcagaggctattaaaggaactgtacatcagcaagaacatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

268

Amino Acids

29.77

Weight (kDa)

9.42

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14770 AT5G14770 AT5G14770 AT5G14770 AT5G14770
fragaria_vesca	FvH4_7g02371
malus_domestica	MD00G1202300.v1.1 MD00G1202400.v1.1 MD03G1142100.v1.1 MD11G1161100.v1.1 MD11G1161200.v1.1
prunus_persica	Prupe.2G007100_v2.0.a1
pyrus_communis	pycom03g09690 pycom11g13400
rosa_chinensis	RchiOBHm_Chr1g0384651
rosa_laevigata	RLG00000008173 RLG00000026023
rosa_multiflora	Rmu_co8325115.1_g000001 Rmu_sc0012136.1_g000024
rosa_roxburghii	Rroxscaffold_4G00276490
rosa_rugosa	Rorug01G0450400
rosa_samantha	Rh1AG475000 Rh1BG433200 Rh1CG446400 Rh1CG446600 Rh1DG465700
rosa_wichuraiana	Rw1G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	551
AfaI	GTAC	3 cut(s)	260, 712, 788
AfiI	CCNNNNNNNGG	2 cut(s)	520, 655
AgsI	TTSAA	2 cut(s)	254, 570
AjnI	CCWGG	3 cut(s)	89, 700, 745
AluBI	AGCT	6 cut(s)	13, 140, 518, 526, 604, 653
AluI	AGCT	6 cut(s)	13, 140, 518, 526, 604, 653
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	186, 613
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	551
BbvCI	CCTCAGC	2 cut(s)	231, 654
BbvI	GCAGC	2 cut(s)	198, 625
BccI	CCATC	1 cut(s)	198
BciT130I	CCWGG	3 cut(s)	91, 702, 747
BfaI	CTAG	3 cut(s)	462, 519, 741
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	187, 614
BlsI	GCNGC	2 cut(s)	188, 615
Bme1390I	CCNGG	3 cut(s)	91, 702, 747
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	278, 553
BmrFI	CCNGG	3 cut(s)	91, 702, 747
BmsI	GCATC	4 cut(s)	13, 213, 528, 751
Bpu10I	CCTNAGC	3 cut(s)	231, 495, 654
BsaAI	YACGTR	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	520, 655
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	3 cut(s)	91, 702, 747
BseLI	CCNNNNNNNGG	2 cut(s)	520, 655
BseMII	CTCAG	3 cut(s)	222, 645, 779
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	198, 625
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	2 cut(s)	520, 655
BsnI	GGCC	1 cut(s)	98
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	223, 646, 778
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	278, 553
BspT107I	GGYRCC	1 cut(s)	551
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	37
Bst2UI	CCWGG	3 cut(s)	91, 702, 747
Bst4CI	ACNGT	2 cut(s)	106, 786
Bst6I	CTCTTC	2 cut(s)	108, 121
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	786
BstBAI	YACGTR	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	228, 543
BstDEI	CTNAG	4 cut(s)	231, 495, 654, 765
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 551, 610
BstNI	CCWGG	3 cut(s)	91, 702, 747
BstSCI	CCNGG	3 cut(s)	89, 700, 745
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	198, 625
BsuRI	GGCC	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	228, 543
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	259, 711, 787
CviAII	CATG	1 cut(s)	41
CviQI	GTAC	3 cut(s)	259, 711, 787
DdeI	CTNAG	4 cut(s)	231, 495, 654, 765
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	108, 121
EarI	CTCTTC	2 cut(s)	108, 121
Eco47I	GGWCC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	3 cut(s)	89, 700, 745
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	44
FatI	CATG	1 cut(s)	40
FauNDI	CATATG	2 cut(s)	364, 803
Fnu4HI	GCNGC	2 cut(s)	187, 614
Fsp4HI	GCNGC	2 cut(s)	187, 614
FspBI	CTAG	3 cut(s)	462, 519, 741
GluI	GCNGC	2 cut(s)	187, 614
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	11
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	1 cut(s)	716
Hpy188I	TCNGA	2 cut(s)	9, 768
Hpy188III	TCNNGA	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	88, 400, 748
HpyCH4III	ACNGT	2 cut(s)	106, 786
HpyCH4IV	ACGT	2 cut(s)	169, 257
HpyCH4V	TGCA	2 cut(s)	4, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 551, 610
HpyF3I	CTNAG	4 cut(s)	231, 495, 654, 765
HpySE526I	ACGT	2 cut(s)	169, 257
Hsp92II	CATG	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	198, 625
LweI	GCATC	4 cut(s)	13, 213, 528, 751
MaeI	CTAG	3 cut(s)	462, 519, 741
MaeII	ACGT	2 cut(s)	169, 257
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	6 cut(s)	125, 138, 338, 343, 558, 640
MluCI	AATT	2 cut(s)	314, 562
MnlI	CCTC	6 cut(s)	44, 122, 226, 613, 649, 762
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	776
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	3 cut(s)	91, 702, 747
MvaI	CCWGG	3 cut(s)	91, 702, 747
MwoI	GCNNNNNNNGC	3 cut(s)	10, 551, 610
NdeI	CATATG	2 cut(s)	364, 803
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	2 cut(s)	278, 553
NmeAIII	GCCGAG	1 cut(s)	700
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	188, 615
Ppu21I	YACGTR	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	277
PsiI	TTATAA	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	3 cut(s)	89, 700, 745
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	3 cut(s)	89, 700, 745
PspN4I	GGNNCC	2 cut(s)	278, 553
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	290
RsaI	GTAC	3 cut(s)	260, 712, 788
RsaNI	GTAC	3 cut(s)	259, 711, 787
SaqAI	TTAA	1 cut(s)	776
SatI	GCNGC	2 cut(s)	187, 614
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	91, 702, 747
SfaNI	GCATC	4 cut(s)	13, 213, 528, 751
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	314, 562
SspI	AATATT	2 cut(s)	250, 265
SspMI	CTAG	3 cut(s)	462, 519, 741
StyD4I	CCNGG	3 cut(s)	89, 700, 745
TaaI	ACNGT	2 cut(s)	106, 786
TaiI	ACGT	2 cut(s)	172, 260
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	314, 562
TatI	WGTACW	1 cut(s)	786
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TseI	GCWGC	2 cut(s)	186, 613
TspDTI	ATGAA	5 cut(s)	327, 344, 545, 695, 708
VpaK11BI	GGWCC	1 cut(s)	277
XspI	CTAG	3 cut(s)	462, 519, 741
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.