Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14770 AT5G14770 AT5G14770 AT5G14770 AT5G14770 |
| fragaria_vesca | FvH4_7g02371 |
| malus_domestica | MD00G1202300.v1.1 MD00G1202400.v1.1 MD03G1142100.v1.1 MD11G1161100.v1.1 MD11G1161200.v1.1 |
| prunus_persica | Prupe.2G007100_v2.0.a1 |
| pyrus_communis | pycom03g09690 pycom11g13400 |
| rosa_chinensis | RchiOBHm_Chr1g0384651 |
| rosa_laevigata | RLG00000008173 RLG00000026023 |
| rosa_multiflora | Rmu_co8325115.1_g000001 Rmu_sc0012136.1_g000024 |
| rosa_roxburghii | Rroxscaffold_4G00276490 |
| rosa_rugosa | Rorug01G0450400 |
| rosa_samantha | Rh1AG475000 Rh1BG433200 Rh1CG446400 Rh1CG446600 Rh1DG465700 |
| rosa_wichuraiana | Rw1G039760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 249, 410, 533, 1602 |
| AarI | CACCTGC | 1 cut(s) | 1540 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 183 |
| Acc36I | ACCTGC | 2 cut(s) | 959, 1540 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1163 |
| AccI | GTMKAC | 1 cut(s) | 32 |
| AccII | CGCG | 1 cut(s) | 1140 |
| AciI | CCGC | 1 cut(s) | 445 |
| AclWI | GGATC | 3 cut(s) | 602, 615, 1396 |
| AcoI | YGGCCR | 2 cut(s) | 367, 1638 |
| AcsI | RAATTY | 2 cut(s) | 391, 1500 |
| AcuI | CTGAAG | 2 cut(s) | 402, 1113 |
| AfaI | GTAC | 6 cut(s) | 83, 513, 733, 785, 1041, 1243 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1163 |
| AhlI | ACTAGT | 1 cut(s) | 46 |
| AjnI | CCWGG | 1 cut(s) | 708 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 855, 887 |
| AleI | CACNNNNGTG | 1 cut(s) | 1655 |
| AluBI | AGCT | 8 cut(s) | 173, 464, 525, 674, 871, 982, 1091, 1564 |
| AluI | AGCT | 8 cut(s) | 173, 464, 525, 674, 871, 982, 1091, 1564 |
| Alw21I | GWGCWC | 1 cut(s) | 984 |
| Alw26I | GTCTC | 3 cut(s) | 234, 354, 820 |
| AlwI | GGATC | 3 cut(s) | 602, 615, 1396 |
| AoxI | GGCC | 6 cut(s) | 294, 367, 538, 706, 879, 1638 |
| ApeKI | GCWGC | 2 cut(s) | 86, 273 |
| ApoI | RAATTY | 2 cut(s) | 391, 1500 |
| AseI | ATTAAT | 2 cut(s) | 1100, 1299 |
| AspLEI | GCGC | 2 cut(s) | 807, 1074 |
| AspS9I | GGNCC | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 293, 887, 1331 |
| BalI | TGGCCA | 2 cut(s) | 369, 1640 |
| BamHI | GGATCC | 1 cut(s) | 607 |
| BanII | GRGCYC | 2 cut(s) | 753, 984 |
| BbsI | GAAGAC | 1 cut(s) | 1509 |
| Bbv12I | GWGCWC | 1 cut(s) | 984 |
| BbvI | GCAGC | 2 cut(s) | 98, 285 |
| BccI | CCATC | 7 cut(s) | 107, 196, 359, 583, 895, 1075, 1157 |
| BciT130I | CCWGG | 1 cut(s) | 710 |
| BcoDI | GTCTC | 3 cut(s) | 234, 354, 820 |
| BcuI | ACTAGT | 1 cut(s) | 46 |
| BfaI | CTAG | 2 cut(s) | 47, 1631 |
| BfmI | CTRYAG | 1 cut(s) | 1309 |
| BfoI | RGCGCY | 1 cut(s) | 808 |
| BfuAI | ACCTGC | 2 cut(s) | 959, 1540 |
| BglII | AGATCT | 1 cut(s) | 323 |
| BisI | GCNGC | 3 cut(s) | 87, 274, 446 |
| BlsI | GCNGC | 3 cut(s) | 88, 275, 447 |
| Bme1390I | CCNGG | 1 cut(s) | 710 |
| BmgT120I | GGNCC | 1 cut(s) | 294 |
| BmiI | GGNNCC | 2 cut(s) | 609, 1269 |
| BmrFI | CCNGG | 1 cut(s) | 710 |
| BmsI | GCATC | 4 cut(s) | 1408, 1435, 1501, 1564 |
| BpiI | GAAGAC | 1 cut(s) | 1509 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 214, 246 |
| BpmI | CTGGAG | 1 cut(s) | 1695 |
| Bsa29I | ATCGAT | 1 cut(s) | 24 |
| BsaBI | GATNNNNATC | 2 cut(s) | 612, 777 |
| BsaJI | CCNNGG | 2 cut(s) | 666, 1405 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 212, 242 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1163 |
| Bse1I | ACTGG | 2 cut(s) | 1249, 1678 |
| Bse3DI | GCAATG | 1 cut(s) | 163 |
| Bse8I | GATNNNNATC | 2 cut(s) | 612, 777 |
| BseBI | CCWGG | 1 cut(s) | 710 |
| BseCI | ATCGAT | 1 cut(s) | 24 |
| BseDI | CCNNGG | 2 cut(s) | 666, 1405 |
| BseGI | GGATG | 5 cut(s) | 118, 136, 514, 1086, 1168 |
| BseJI | GATNNNNATC | 2 cut(s) | 612, 777 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1163 |
| BseMI | GCAATG | 1 cut(s) | 163 |
| BseMII | CTCAG | 2 cut(s) | 341, 468 |
| BseNI | ACTGG | 2 cut(s) | 1249, 1678 |
| BseRI | GAGGAG | 2 cut(s) | 1032, 1692 |
| BseXI | GCAGC | 2 cut(s) | 98, 285 |
| Bsh1236I | CGCG | 1 cut(s) | 1140 |
| BshFI | GGCC | 6 cut(s) | 296, 369, 540, 708, 881, 1640 |
| BshVI | ATCGAT | 1 cut(s) | 24 |
| BsiHKAI | GWGCWC | 1 cut(s) | 984 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1163 |
| BsmAI | GTCTC | 3 cut(s) | 234, 354, 820 |
| BsmBI | CGTCTC | 1 cut(s) | 354 |
| BsmI | GAATGC | 3 cut(s) | 347, 1304, 1464 |
| BsnI | GGCC | 6 cut(s) | 296, 369, 540, 708, 881, 1640 |
| Bsp1286I | GDGCHC | 2 cut(s) | 753, 984 |
| Bsp143I | GATC | 5 cut(s) | 323, 607, 991, 1135, 1401 |
| Bsp19I | CCATGG | 1 cut(s) | 666 |
| BspACI | CCGC | 1 cut(s) | 445 |
| BspANI | GGCC | 6 cut(s) | 296, 369, 540, 708, 881, 1640 |
| BspCNI | CTCAG | 2 cut(s) | 340, 469 |
| BspDI | ATCGAT | 1 cut(s) | 24 |
| BspFNI | CGCG | 1 cut(s) | 1140 |
| BspLI | GGNNCC | 2 cut(s) | 609, 1269 |
| BspMAI | CTGCAG | 1 cut(s) | 1313 |
| BspMI | ACCTGC | 2 cut(s) | 959, 1540 |
| BspPI | GGATC | 3 cut(s) | 602, 615, 1396 |
| BspQI | GCTCTTC | 1 cut(s) | 667 |
| BsrDI | GCAATG | 1 cut(s) | 163 |
| BsrI | ACTGG | 2 cut(s) | 1249, 1678 |
| BssECI | CCNNGG | 2 cut(s) | 666, 1405 |
| BssMI | GATC | 5 cut(s) | 323, 607, 991, 1135, 1401 |
| BssNAI | GTATAC | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 2 cut(s) | 666, 1405 |
| Bst1107I | GTATAC | 1 cut(s) | 33 |
| Bst2UI | CCWGG | 1 cut(s) | 710 |
| Bst4CI | ACNGT | 3 cut(s) | 318, 760, 1618 |
| Bst6I | CTCTTC | 3 cut(s) | 2, 667, 1525 |
| BstC8I | GCNNGC | 2 cut(s) | 658, 984 |
| BstDEI | CTNAG | 2 cut(s) | 327, 477 |
| BstDSI | CCRYGG | 1 cut(s) | 666 |
| BstF5I | GGATG | 5 cut(s) | 118, 136, 514, 1086, 1168 |
| BstFNI | CGCG | 1 cut(s) | 1140 |
| BstH2I | RGCGCY | 1 cut(s) | 808 |
| BstHHI | GCGC | 2 cut(s) | 807, 1074 |
| BstKTI | GATC | 5 cut(s) | 326, 610, 994, 1138, 1404 |
| BstMAI | GTCTC | 3 cut(s) | 234, 354, 820 |
| BstMBI | GATC | 5 cut(s) | 323, 607, 991, 1135, 1401 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1331, 1561, 1646 |
| BstNI | CCWGG | 1 cut(s) | 710 |
| BstSCI | CCNGG | 1 cut(s) | 708 |
| BstSFI | CTRYAG | 1 cut(s) | 1309 |
| BstUI | CGCG | 1 cut(s) | 1140 |
| BstV1I | GCAGC | 2 cut(s) | 98, 285 |
| BstV2I | GAAGAC | 1 cut(s) | 1509 |
| BstX2I | RGATCY | 2 cut(s) | 323, 607 |
| BstYI | RGATCY | 2 cut(s) | 323, 607 |
| BstZ17I | GTATAC | 1 cut(s) | 33 |
| Bsu15I | ATCGAT | 1 cut(s) | 24 |
| BsuRI | GGCC | 6 cut(s) | 296, 369, 540, 708, 881, 1640 |
| BsuTUI | ATCGAT | 1 cut(s) | 24 |
| BtgI | CCRYGG | 1 cut(s) | 666 |
| BtgZI | GCGATG | 1 cut(s) | 1431 |
| BtsCI | GGATG | 5 cut(s) | 118, 136, 514, 1086, 1168 |
| BtsIMutI | CAGTG | 2 cut(s) | 314, 1614 |
| BveI | ACCTGC | 2 cut(s) | 959, 1540 |
| Cac8I | GCNNGC | 2 cut(s) | 658, 984 |
| CfoI | GCGC | 2 cut(s) | 807, 1074 |
| Cfr13I | GGNCC | 1 cut(s) | 294 |
| ClaI | ATCGAT | 1 cut(s) | 24 |
| CseI | GACGC | 2 cut(s) | 1331, 1503 |
| Csp6I | GTAC | 6 cut(s) | 82, 512, 732, 784, 1040, 1242 |
| CviAII | CATG | 8 cut(s) | 263, 667, 883, 1012, 1063, 1294, 1349, 1642 |
| CviQI | GTAC | 6 cut(s) | 82, 512, 732, 784, 1040, 1242 |
| DdeI | CTNAG | 2 cut(s) | 327, 477 |
| DpnI | GATC | 5 cut(s) | 325, 609, 993, 1137, 1403 |
| DpnII | GATC | 5 cut(s) | 323, 607, 991, 1135, 1401 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 183 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 183 |
| EaeI | YGGCCR | 2 cut(s) | 367, 1638 |
| Eam1104I | CTCTTC | 3 cut(s) | 2, 667, 1525 |
| EarI | CTCTTC | 3 cut(s) | 2, 667, 1525 |
| Ecl136II | GAGCTC | 1 cut(s) | 982 |
| Eco130I | CCWWGG | 2 cut(s) | 666, 1405 |
| Eco24I | GRGCYC | 2 cut(s) | 753, 984 |
| Eco53kI | GAGCTC | 1 cut(s) | 982 |
| Eco57I | CTGAAG | 2 cut(s) | 402, 1113 |
| EcoICRI | GAGCTC | 1 cut(s) | 982 |
| EcoRI | GAATTC | 1 cut(s) | 1500 |
| EcoRII | CCWGG | 1 cut(s) | 708 |
| EcoT14I | CCWWGG | 2 cut(s) | 666, 1405 |
| EcoT22I | ATGCAT | 1 cut(s) | 1306 |
| EcoT38I | GRGCYC | 2 cut(s) | 753, 984 |
| ErhI | CCWWGG | 2 cut(s) | 666, 1405 |
| Esp3I | CGTCTC | 1 cut(s) | 354 |
| FaeI | CATG | 8 cut(s) | 266, 670, 886, 1015, 1066, 1297, 1352, 1645 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 330, 362, 855, 887 |
| FatI | CATG | 8 cut(s) | 262, 666, 882, 1011, 1062, 1293, 1348, 1641 |
| FblI | GTMKAC | 1 cut(s) | 32 |
| Fnu4HI | GCNGC | 3 cut(s) | 87, 274, 446 |
| FokI | GGATG | 5 cut(s) | 125, 143, 521, 1093, 1175 |
| FriOI | GRGCYC | 2 cut(s) | 753, 984 |
| Fsp4HI | GCNGC | 3 cut(s) | 87, 274, 446 |
| FspBI | CTAG | 2 cut(s) | 47, 1631 |
| GlaI | GCGC | 2 cut(s) | 806, 1073 |
| GluI | GCNGC | 3 cut(s) | 87, 274, 446 |
| GsuI | CTGGAG | 1 cut(s) | 1695 |
| HaeII | RGCGCY | 1 cut(s) | 808 |
| HaeIII | GGCC | 6 cut(s) | 296, 369, 540, 708, 881, 1640 |
| HgaI | GACGC | 2 cut(s) | 1331, 1503 |
| HhaI | GCGC | 2 cut(s) | 807, 1074 |
| Hin1II | CATG | 8 cut(s) | 266, 670, 886, 1015, 1066, 1297, 1352, 1645 |
| Hin6I | GCGC | 2 cut(s) | 805, 1072 |
| HinP1I | GCGC | 2 cut(s) | 805, 1072 |
| HincII | GTYRAC | 1 cut(s) | 1144 |
| HindII | GTYRAC | 1 cut(s) | 1144 |
| HindIII | AAGCTT | 2 cut(s) | 869, 1562 |
| HinfI | GANTC | 5 cut(s) | 26, 223, 259, 301, 1538 |
| HpaI | GTTAAC | 1 cut(s) | 1144 |
| HphI | GGTGA | 4 cut(s) | 16, 293, 887, 1331 |
| Hpy166II | GTNNAC | 3 cut(s) | 33, 974, 1144 |
| Hpy188I | TCNGA | 7 cut(s) | 258, 330, 378, 478, 565, 772, 1401 |
| Hpy188III | TCNNGA | 7 cut(s) | 233, 506, 856, 989, 1133, 1271, 1592 |
| Hpy8I | GTNNAC | 3 cut(s) | 33, 974, 1144 |
| HpyAV | CCTTC | 6 cut(s) | 204, 692, 853, 857, 1071, 1088 |
| HpyCH4III | ACNGT | 3 cut(s) | 318, 760, 1618 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1331, 1561, 1646 |
| HpyF3I | CTNAG | 2 cut(s) | 327, 477 |
| Hsp92II | CATG | 8 cut(s) | 266, 670, 886, 1015, 1066, 1297, 1352, 1645 |
| HspAI | GCGC | 2 cut(s) | 805, 1072 |
| KspAI | GTTAAC | 1 cut(s) | 1144 |
| Kzo9I | GATC | 5 cut(s) | 323, 607, 991, 1135, 1401 |
| LguI | GCTCTTC | 1 cut(s) | 667 |
| LmnI | GCTCC | 2 cut(s) | 530, 1273 |
| Lsp1109I | GCAGC | 2 cut(s) | 98, 285 |
| LweI | GCATC | 4 cut(s) | 1408, 1435, 1501, 1564 |
| MaeI | CTAG | 2 cut(s) | 47, 1631 |
| MaeIII | GTNAC | 2 cut(s) | 1319, 1391 |
| MalI | GATC | 5 cut(s) | 325, 609, 993, 1137, 1403 |
| MboI | GATC | 5 cut(s) | 323, 607, 991, 1135, 1401 |
| MboII | GAAGA | 9 cut(s) | 19, 129, 350, 395, 470, 654, 828, 1509, 1542 |
| MflI | RGATCY | 2 cut(s) | 323, 607 |
| MhlI | GDGCHC | 2 cut(s) | 753, 984 |
| MlsI | TGGCCA | 2 cut(s) | 369, 1640 |
| MluNI | TGGCCA | 2 cut(s) | 369, 1640 |
| MlyI | GAGTC | 2 cut(s) | 232, 310 |
| Mox20I | TGGCCA | 2 cut(s) | 369, 1640 |
| Mph1103I | ATGCAT | 1 cut(s) | 1306 |
| MscI | TGGCCA | 2 cut(s) | 369, 1640 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1655 |
| Msp20I | TGGCCA | 2 cut(s) | 369, 1640 |
| MspR9I | CCNGG | 1 cut(s) | 710 |
| Mva1269I | GAATGC | 3 cut(s) | 347, 1304, 1464 |
| MvaI | CCWGG | 1 cut(s) | 710 |
| MvnI | CGCG | 1 cut(s) | 1140 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1331, 1561, 1646 |
| NcoI | CCATGG | 1 cut(s) | 666 |
| NdeII | GATC | 5 cut(s) | 323, 607, 991, 1135, 1401 |
| NlaIII | CATG | 8 cut(s) | 266, 670, 886, 1015, 1066, 1297, 1352, 1645 |
| NlaIV | GGNNCC | 2 cut(s) | 609, 1269 |
| NmuCI | GTSAC | 1 cut(s) | 1319 |
| NsiI | ATGCAT | 1 cut(s) | 1306 |
| OliI | CACNNNNGTG | 1 cut(s) | 1655 |
| PaqCI | CACCTGC | 1 cut(s) | 1540 |
| PciSI | GCTCTTC | 1 cut(s) | 667 |
| PctI | GAATGC | 3 cut(s) | 347, 1304, 1464 |
| PfeI | GAWTC | 3 cut(s) | 26, 259, 1538 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1163 |
| PkrI | GCNGC | 3 cut(s) | 88, 275, 447 |
| PleI | GAGTC | 2 cut(s) | 231, 309 |
| PpsI | GAGTC | 2 cut(s) | 231, 309 |
| PshBI | ATTAAT | 2 cut(s) | 1100, 1299 |
| PsiI | TTATAA | 4 cut(s) | 249, 410, 533, 1602 |
| Psp124BI | GAGCTC | 1 cut(s) | 984 |
| Psp6I | CCWGG | 1 cut(s) | 708 |
| PspGI | CCWGG | 1 cut(s) | 708 |
| PspN4I | GGNNCC | 2 cut(s) | 609, 1269 |
| PspPI | GGNCC | 1 cut(s) | 294 |
| PstI | CTGCAG | 1 cut(s) | 1313 |
| PsuI | RGATCY | 2 cut(s) | 323, 607 |
| RsaI | GTAC | 6 cut(s) | 83, 513, 733, 785, 1041, 1243 |
| RsaNI | GTAC | 6 cut(s) | 82, 512, 732, 784, 1040, 1242 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1655 |
| SacI | GAGCTC | 1 cut(s) | 984 |
| SapI | GCTCTTC | 1 cut(s) | 667 |
| SatI | GCNGC | 3 cut(s) | 87, 274, 446 |
| Sau3AI | GATC | 5 cut(s) | 323, 607, 991, 1135, 1401 |
| Sau96I | GGNCC | 1 cut(s) | 294 |
| SchI | GAGTC | 2 cut(s) | 232, 310 |
| ScrFI | CCNGG | 1 cut(s) | 710 |
| SduI | GDGCHC | 2 cut(s) | 753, 984 |
| SfaNI | GCATC | 4 cut(s) | 1408, 1435, 1501, 1564 |
| SfcI | CTRYAG | 1 cut(s) | 1309 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1655 |
| SpeI | ACTAGT | 1 cut(s) | 46 |
| SsiI | CCGC | 1 cut(s) | 445 |
| SspI | AATATT | 1 cut(s) | 823 |
| SspMI | CTAG | 2 cut(s) | 47, 1631 |
| SstI | GAGCTC | 1 cut(s) | 984 |
| StyD4I | CCNGG | 1 cut(s) | 708 |
| StyI | CCWWGG | 2 cut(s) | 666, 1405 |
| TaaI | ACNGT | 3 cut(s) | 318, 760, 1618 |
| TaqI | TCGA | 2 cut(s) | 24, 1591 |
| TatI | WGTACW | 4 cut(s) | 511, 731, 783, 1241 |
| TauI | GCSGC | 1 cut(s) | 448 |
| TfiI | GAWTC | 3 cut(s) | 26, 259, 1538 |
| TscAI | CASTG | 2 cut(s) | 321, 1621 |
| TseFI | GTSAC | 1 cut(s) | 1319 |
| TseI | GCWGC | 2 cut(s) | 86, 273 |
| Tsp45I | GTSAC | 1 cut(s) | 1319 |
| TspRI | CASTG | 2 cut(s) | 321, 1621 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1163 |
| VspI | ATTAAT | 2 cut(s) | 1100, 1299 |
| XapI | RAATTY | 2 cut(s) | 391, 1500 |
| XmiI | GTMKAC | 1 cut(s) | 32 |
| XspI | CTAG | 2 cut(s) | 47, 1631 |
| Zsp2I | ATGCAT | 1 cut(s) | 1306 |