Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006142

Physical Location & Seq

Genomic Coordinates Forward (+)

15120739 .. 15123885

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1142100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3066 bp

ATGTTCTTCAGTAAGTTCGAATCATTGAGCTTCTTGTCATCAGCCAAACTTCGTCGATCAATTCCCATGGCCCTTAAAAACCCACCCATCTCTGCTCCTTCCCATGTTCAAAGCTACAGTTCTGCCATCCCGCCATCCAAGACCCACCTCTACGCATCGTTCTTCTGCACCCTCGTACAACTTTACTTGACATGTGGCAGATTTTCCAATGCTTCTGGTGCCCTCTATTCTATGCGAAATCATGGCCTTGTTCCTGATTTGCCGCTCTGGAATCAACTTCTTTACCAATTCAATGCCTCAGGTTTCGTCTCTCATGTATCTTTTCTTTACGCTGAGATGCTCTCTTGTGGGGTTATGCCCAATATTTTCACCCGCAACATATTGATTCATTCTTTCTGCAAAGTGGGAAACTTGAGTCTTGCACTAGATTTCCTGAGAACTGGTGAAATTGATACTGTTTCATATAATACTGTCATATGGGGTTTCTGTAAACAAGGATTGGCTTATCAGGCTTTTGGGTTTTTGTCCCAAATGGTGAAGAGGGATCTATCAATCAATTCGTATACTTGTAATACACTAGTTAACGGGTTTTGTCAAATTGGGTTGGTAGAGTATGCAGAATGGGTTATGGATAATTTGGTGGATGGTGGAATTCCACAGGATGTTGTAGGTTTTAACACCTTGATTGCTGGACATTGCAAAGCTGGTCAAGTTAGTCAGGCACTTGAATTGATGGGGAGAATGGGTAGGGACAGTCTGTTGCCTGATATTGTTACTTATAATACTCTCATACATGGGTTTTGCAACATGGGTGATTTTGTAAGGGCCAAGAGTCTTATAGATACGATGTTGAGATCGCGGAGAAACAAAGAAGGCCCTCAAGATGAAAGAGATGATGGCCAGAATCAGACTGAAGGTGAGAATTTGAAACCAAACCTTATAACACACACCACACTCATTAGTTCTTACAGTAAGCGGCAAGGACTTGAAGAAGCTCTGTCTTTGTATGAAGAAATGGTTATGAATGGCATTTATCCCGATGTAGTTACTTGTAGCTCCATTATAAATGGCCTTTGCAAGTATGGGAGGTTATCAGAAGCCAAAGTGCTTCTAAGGGAGATGGAGGAAATGGATGTGGATCCTAATCATGTCTCCTACACTACCCTTGTGGATTCCTTGTTTAAAGCAGGCTCTTCCATGGAAGCTCTTGCCCTTCAAAGCCAAATGGTTGTTCGTGGCCTGGTTTTTGATTTGGTAATCTGTACTGCTTTAATTGTTGGACTCTTTAAGGTTGGGAAAGCTGATGAGGCTAAAGACCTGTTTCGAACAATTTCAAAGCTTGGCCTAGATCCAAACTCTATCGCCTACTCTGCATTCATCAATGGGCTTTGCAATTTAGGAGACATGAATGATGCAGAATCTATACTTAAACAAATGGAGAAGCGCCACGTTCTACCAAATATTATTACTTATTCGTCAATGATAAATGGCTTCATGAAGGAAGGAAAGCTTGGTGAGGCCATGAATTTATTAAGGGAGATGGTGCAAAAGAATATCCTGCCAAATGCTTTTGTGTATGCAACACTAATTGATGGGTGTTTTAAGGCAGGCAAACAAGAGTTTGCTCTTGATCTTTACAATGAAATGAAGATCGGAGGATTGGAGGAAAATAGTTTCATACTTGATGCTTTTGTGAACAACATGAAAAAGCACAGAAGGATGGAGGAAGCTGAAGGATTAGTTATGGATATGACTTCTGGGGGTTTGTTTCTAGACCGTGTTAACTACACATCTCTAATGGATGGTTACTTTAAAGCGCGAAAGGAGTCAATTGCTCTTAACTTGGCCCAAGAGATGATGGAGAAAAATATAGGGTTTGATGTTGTTGCATACAATGTCTTGATGAATGGTTTACTGAGGCTTGGGAAGTATGAAGCAAAATCTGTTTGTACTGGAATGAAAGAGTTGGGTTTGGCTCCTGACTGTGCCACATACAATACCATGATTAATGGATTCTGCAGAGAGGGTGACACTGAAAATGCTTTTAAACTCTGGCATGAGATGAAGTGTCAAGATTTAATTCCAAACTCAAACACTTGTAACATTCTGATACGAGGACTTTGTGATACTGATGAGATAGGAAAAGCAATAGATGTCTTAAATGGAATGGTGGTTGATGGTTCTCTTCCTACATCATTTATTCACAGAATTCTGCTTGATGCTTCTTCAAAGAGTAGAAGAGCTGATTCAATTTTGCAGATGCATCATAAGCTTGTATGTATGGGGCTTAACCTCAATCGGGATGTTTATAATAATCTCATCACTGTCTTGTGTAGGCTAGGTATGACCATGAAAGCTACTTCAGTATTGAAAGAGATGACTGGAGGAGGATTTTTAGCTGATATTGATACCTACAATGCCTTTATATGTGGATATTGCAGAAGCAGTCATATGAAAAGGGCTTTTGCTACTTACTCGCAAATGTTGGCTGAGGGAGTTTCTCCAAATATTGAAACGTACAATCTTCTTTTAGGGGGACTTTCAGGTGCTGGTCTGATGACAAATGCAGAGGAGTTCTTTGGTCAAATGAAGAACAAAGGCTTTGTTCCTAATGCTTCTACGTATGACACTTTGGTTTCTGGTCATGGTAAGAAGGGAAATAAAAAGGAAGCTATAAGACTTTATTGTGAAATGGTAAGCAAGGGTTTTGTTCCCAAAACTAGCACCTATAATATCCTTATTAGTGATTTTGCTAAGGCGGAAAAGATGAGCCAAGCTAGGGAGCTTATGAATGAGATGCAGACAAGAGGGACCTCTCCTAACTCTTCAACTTACAACATACTAATCTGCGGCTGGTGTAGGCTATCAAGGCAGCCAGAGCTGGAGAGAAATTTGAAAAAGTCATATCGGGCTGAGGCAAAAAGATTATTAACTGATATGAAAGAAAAAGGGTATGTTCCATGTGAAAGTACTGTTCTATGCATCAGTTCTACCTTTGCTCGACCAGGAAAGAAGGCCGATGCTCAGAGGCTATTGAAGGAACTCTATAACAAAAAGCACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1022

Amino Acids

113.74

Weight (kDa)

7.96

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	150 - 179	1e-05	PPR repeat
PPR_2	PF13041	151 - 199	5.5e-14	PPR repeat family
PPR_3	PF13812	209 - 267	1.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	217 - 248	1.7e-07	PPR repeat
PPR_2	PF13041	221 - 269	5.7e-16	PPR repeat family
PPR_1	PF12854	253 - 283	1.1e-09	PPR repeat
PPR_2	PF13041	255 - 286	5.7e-07	PPR repeat family
PPR	PF01535	258 - 286	7.7e-06	PPR repeat
PPR_2	PF13041	311 - 360	1.3e-13	PPR repeat family
PPR_long	PF17177	323 - 434	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	334 - 390	2.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	342 - 375	8.8e-10	PPR repeat
PPR_2	PF13041	346 - 395	4e-13	PPR repeat family
PPR	PF01535	349 - 378	6e-06	PPR repeat
PPR_3	PF13812	407 - 461	9.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	417 - 465	4.8e-10	PPR repeat family
TPR_24	PF23276	431 - 549	1.9e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	433 - 539	7.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	440 - 498	2.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	448 - 480	7.8e-08	PPR repeat
PPR_2	PF13041	451 - 500	1.8e-14	PPR repeat family
PPR_1	PF12854	483 - 515	1.5e-09	PPR repeat
PPR_2	PF13041	486 - 535	7.6e-15	PPR repeat family
PPR	PF01535	489 - 519	1.2e-07	PPR repeat
PPR_2	PF13041	521 - 558	5.7e-06	PPR repeat family
PPR_3	PF13812	580 - 636	2.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	592 - 639	7.4e-08	PPR repeat family
PPR_long	PF17177	612 - 758	3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	615 - 671	2.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	627 - 674	1.6e-11	PPR repeat family
PPR_3	PF13812	651 - 705	9.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	657 - 689	5.8e-14	PPR repeat
PPR_2	PF13041	660 - 709	3.5e-18	PPR repeat family
PPR	PF01535	664 - 690	5.1e-09	PPR repeat
PPR_3	PF13812	788 - 845	1.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	801 - 847	4.2e-13	PPR repeat family
PPR_long	PF17177	814 - 948	7.3e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	835 - 882	8.9e-11	PPR repeat family
PPR_1	PF12854	866 - 899	1.3e-06	PPR repeat
PPR_2	PF13041	873 - 919	9.6e-11	PPR repeat family
PPR_3	PF13812	894 - 949	2.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	905 - 954	6.5e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14770 AT5G14770 AT5G14770 AT5G14770 AT5G14770
fragaria_vesca	FvH4_7g02371
malus_domestica	MD00G1202300.v1.1 MD00G1202400.v1.1 MD03G1142100.v1.1 MD11G1161100.v1.1 MD11G1161200.v1.1
prunus_persica	Prupe.2G007100_v2.0.a1
pyrus_communis	pycom03g09690 pycom11g13400
rosa_chinensis	RchiOBHm_Chr1g0384651
rosa_laevigata	RLG00000008173 RLG00000026023
rosa_multiflora	Rmu_co8325115.1_g000001 Rmu_sc0012136.1_g000024
rosa_roxburghii	Rroxscaffold_4G00276490
rosa_rugosa	Rorug01G0450400
rosa_samantha	Rh1AG475000 Rh1BG433200 Rh1CG446400 Rh1CG446600 Rh1DG465700
rosa_wichuraiana	Rw1G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	780, 941, 1064, 2310
AccB1I	GGYRCC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	563
AccII	CGCG	2 cut(s)	859, 1819
AciI	CCGC	7 cut(s)	131, 263, 373, 859, 976, 2759, 2850
AclWI	GGATC	4 cut(s)	552, 1133, 1146, 1343
AcoI	YGGCCR	1 cut(s)	898
AcsI	RAATTY	5 cut(s)	651, 922, 1525, 2208, 2890
AcuI	CTGAAG	3 cut(s)	933, 1752, 2346
AfaI	GTAC	5 cut(s)	177, 1264, 1951, 2519, 2971
AfiI	CCNNNNNNNGG	2 cut(s)	2299, 2779
AflIII	ACRYGT	1 cut(s)	191
AhlI	ACTAGT	1 cut(s)	577
AjnI	CCWGG	2 cut(s)	1239, 3004
AjuI	GAANNNNNNNTTGG	4 cut(s)	1215, 1247, 1494, 1526
Alw26I	GTCTC	3 cut(s)	313, 1156, 1395
AlwI	GGATC	4 cut(s)	552, 1133, 1146, 1343
AlwNI	CAGNNNCTG	1 cut(s)	2549
ApeKI	GCWGC	1 cut(s)	2872
ApoI	RAATTY	5 cut(s)	651, 922, 1525, 2208, 2890
AseI	ATTAAT	1 cut(s)	2007
Asp700I	GAANNNNTTC	1 cut(s)	1330
AspLEI	GCGC	2 cut(s)	1446, 1819
AspS9I	GGNCC	5 cut(s)	70, 825, 875, 1846, 2811
AsuHPI	GGTGA	7 cut(s)	361, 455, 547, 824, 929, 1526, 2039
AsuII	TTCGAA	2 cut(s)	18, 1324
AvaII	GGWCC	1 cut(s)	2811
AxyI	CCTNAGG	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	900
BamHI	GGATCC	1 cut(s)	1138
BanI	GGYRCC	1 cut(s)	218
BbvCI	CCTCAGC	2 cut(s)	2490, 2913
BbvI	GCAGC	1 cut(s)	2884
BciT130I	CCWGG	2 cut(s)	1241, 3006
BcoDI	GTCTC	3 cut(s)	313, 1156, 1395
BcuI	ACTAGT	1 cut(s)	577
BfaI	CTAG	7 cut(s)	425, 578, 1346, 1772, 2339, 2721, 2778
BfmI	CTRYAG	2 cut(s)	115, 2017
BfoI	RGCGCY	1 cut(s)	1447
BisI	GCNGC	4 cut(s)	263, 977, 2851, 2873
BlsI	GCNGC	4 cut(s)	264, 978, 2852, 2874
BmcAI	AGTACT	1 cut(s)	2971
Bme1390I	CCNGG	2 cut(s)	1241, 3006
Bme18I	GGWCC	1 cut(s)	2811
BmgT120I	GGNCC	5 cut(s)	70, 825, 875, 1846, 2811
BmiI	GGNNCC	4 cut(s)	220, 1140, 1977, 2812
BmrFI	CCNGG	2 cut(s)	1241, 3006
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpmI	CTGGAG	2 cut(s)	2403, 2903
Bpu10I	CCTNAGC	3 cut(s)	2490, 2754, 2913
Bpu14I	TTCGAA	2 cut(s)	18, 1324
BpuEI	CTTGAG	2 cut(s)	433, 864
BsaAI	YACGTR	1 cut(s)	2622
BsaBI	GATNNNNATC	2 cut(s)	1137, 1143
BsaJI	CCNNGG	2 cut(s)	66, 1197
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	2299, 2779
Bse1I	ACTGG	3 cut(s)	445, 1957, 2386
Bse21I	CCTNAGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	694
Bse8I	GATNNNNATC	2 cut(s)	1137, 1143
BseBI	CCWGG	2 cut(s)	1241, 3006
BseDI	CCNNGG	2 cut(s)	66, 1197
BseGI	GGATG	8 cut(s)	126, 134, 649, 667, 1138, 1725, 1807, 2308
BseJI	GATNNNNATC	2 cut(s)	1137, 1143
BseLI	CCNNNNNNNGG	2 cut(s)	2299, 2779
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	7 cut(s)	312, 324, 425, 1907, 2481, 2904, 3038
BseNI	ACTGG	3 cut(s)	445, 1957, 2386
BseRI	GAGGAG	2 cut(s)	2400, 2585
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	2884
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	859, 1819
BshNI	GGYRCC	1 cut(s)	218
BslFI	GGGAC	4 cut(s)	511, 764, 2550, 2824
BslI	CCNNNNNNNGG	2 cut(s)	2299, 2779
BsmAI	GTCTC	3 cut(s)	313, 1156, 1395
BsmBI	CGTCTC	1 cut(s)	313
BsmFI	GGGAC	4 cut(s)	511, 764, 2550, 2824
BsmI	GAATGC	1 cut(s)	1373
Bsp119I	TTCGAA	2 cut(s)	18, 1324
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	7 cut(s)	56, 544, 854, 1138, 1348, 1630, 1650
Bsp19I	CCATGG	2 cut(s)	66, 1197
BspACI	CCGC	7 cut(s)	131, 263, 373, 859, 976, 2759, 2850
BspCNI	CTCAG	7 cut(s)	311, 325, 426, 1908, 2482, 2905, 3037
BspFNI	CGCG	2 cut(s)	859, 1819
BspHI	TCATGA	1 cut(s)	1494
BspLI	GGNNCC	4 cut(s)	220, 1140, 1977, 2812
BspMAI	CTGCAG	1 cut(s)	2021
BspPI	GGATC	4 cut(s)	552, 1133, 1146, 1343
BspQI	GCTCTTC	2 cut(s)	1198, 2233
BspT104I	TTCGAA	2 cut(s)	18, 1324
BspT107I	GGYRCC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	694
BsrI	ACTGG	3 cut(s)	445, 1957, 2386
BssECI	CCNNGG	2 cut(s)	66, 1197
BssMI	GATC	7 cut(s)	56, 544, 854, 1138, 1348, 1630, 1650
BssNAI	GTATAC	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	66, 1197
Bst1107I	GTATAC	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	1241, 3006
Bst4CI	ACNGT	9 cut(s)	119, 457, 472, 755, 971, 1778, 1985, 2326, 2974
Bst6I	CTCTTC	5 cut(s)	533, 1198, 2190, 2233, 2830
BstBAI	YACGTR	1 cut(s)	2622
BstBI	TTCGAA	2 cut(s)	18, 1324
BstC8I	GCNNGC	2 cut(s)	1189, 1609
BstDEI	CTNAG	9 cut(s)	298, 333, 434, 1112, 1916, 2490, 2754, 2913, 3024
BstDSI	CCRYGG	2 cut(s)	66, 1197
BstF5I	GGATG	8 cut(s)	126, 134, 649, 667, 1138, 1725, 1807, 2308
BstFNI	CGCG	2 cut(s)	859, 1819
BstH2I	RGCGCY	1 cut(s)	1447
BstHHI	GCGC	2 cut(s)	1446, 1819
BstKTI	GATC	7 cut(s)	59, 547, 857, 1141, 1351, 1633, 1653
BstMAI	GTCTC	3 cut(s)	313, 1156, 1395
BstMBI	GATC	7 cut(s)	56, 544, 854, 1138, 1348, 1630, 1650
BstMWI	GCNNNNNNNGC	7 cut(s)	218, 509, 1307, 1370, 2269, 2869, 2878
BstNI	CCWGG	2 cut(s)	1241, 3006
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	1239, 3004
BstSFI	CTRYAG	2 cut(s)	115, 2017
BstSLI	GKGCMC	1 cut(s)	223
BstSNI	TACGTA	1 cut(s)	2622
BstUI	CGCG	2 cut(s)	859, 1819
BstV1I	GCAGC	1 cut(s)	2884
BstX2I	RGATCY	3 cut(s)	544, 1138, 1348
BstYI	RGATCY	3 cut(s)	544, 1138, 1348
BstZ17I	GTATAC	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	298
BtgI	CCRYGG	2 cut(s)	66, 1197
BtsCI	GGATG	8 cut(s)	126, 134, 649, 667, 1138, 1725, 1807, 2308
BtsIMutI	CAGTG	2 cut(s)	2031, 2322
Cac8I	GCNNGC	2 cut(s)	1189, 1609
CaiI	CAGNNNCTG	1 cut(s)	2549
CciI	TCATGA	1 cut(s)	1494
CfoI	GCGC	2 cut(s)	1446, 1819
Cfr13I	GGNCC	5 cut(s)	70, 825, 875, 1846, 2811
Csp6I	GTAC	5 cut(s)	176, 1263, 1950, 2518, 2970
CviQI	GTAC	5 cut(s)	176, 1263, 1950, 2518, 2970
DdeI	CTNAG	9 cut(s)	298, 333, 434, 1112, 1916, 2490, 2754, 2913, 3024
DpnI	GATC	7 cut(s)	58, 546, 856, 1140, 1350, 1632, 1652
DpnII	GATC	7 cut(s)	56, 544, 854, 1138, 1348, 1630, 1650
DraI	TTTAAA	3 cut(s)	1183, 1813, 2047
EaeI	YGGCCR	1 cut(s)	898
Eam1104I	CTCTTC	5 cut(s)	533, 1198, 2190, 2233, 2830
EarI	CTCTTC	5 cut(s)	533, 1198, 2190, 2233, 2830
EciI	GGCGGA	1 cut(s)	2774
Eco105I	TACGTA	1 cut(s)	2622
Eco130I	CCWWGG	2 cut(s)	66, 1197
Eco47I	GGWCC	1 cut(s)	2811
Eco57I	CTGAAG	3 cut(s)	933, 1752, 2346
Eco81I	CCTNAGG	1 cut(s)	298
EcoO109I	RGGNCCY	2 cut(s)	875, 2811
EcoRI	GAATTC	2 cut(s)	651, 2208
EcoRII	CCWGG	2 cut(s)	1239, 3004
EcoT14I	CCWWGG	2 cut(s)	66, 1197
EcoT22I	ATGCAT	2 cut(s)	2265, 2984
ErhI	CCWWGG	2 cut(s)	66, 1197
Esp3I	CGTCTC	1 cut(s)	313
FalI	AAGNNNNNCTT	2 cut(s)	1494, 1526
FaqI	GGGAC	4 cut(s)	511, 764, 2550, 2824
FauI	CCCGC	2 cut(s)	138, 380
FauNDI	CATATG	2 cut(s)	476, 2451
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	4 cut(s)	263, 977, 2851, 2873
FokI	GGATG	8 cut(s)	113, 121, 656, 674, 1145, 1732, 1814, 2315
Fsp4HI	GCNGC	4 cut(s)	263, 977, 2851, 2873
FspBI	CTAG	7 cut(s)	425, 578, 1346, 1772, 2339, 2721, 2778
GlaI	GCGC	2 cut(s)	1445, 1818
GluI	GCNGC	4 cut(s)	263, 977, 2851, 2873
GsuI	CTGGAG	2 cut(s)	2403, 2903
HaeII	RGCGCY	1 cut(s)	1447
HhaI	GCGC	2 cut(s)	1446, 1819
Hin6I	GCGC	2 cut(s)	1444, 1817
HinP1I	GCGC	2 cut(s)	1444, 1817
HincII	GTYRAC	2 cut(s)	583, 1783
HindII	GTYRAC	2 cut(s)	583, 1783
HindIII	AAGCTT	3 cut(s)	1337, 1508, 2270
HpaI	GTTAAC	2 cut(s)	583, 1783
HphI	GGTGA	7 cut(s)	361, 455, 547, 824, 929, 1526, 2039
Hpy166II	GTNNAC	6 cut(s)	491, 564, 583, 1696, 1783, 1913
Hpy188I	TCNGA	6 cut(s)	909, 1096, 1655, 2109, 2556, 3027
Hpy8I	GTNNAC	6 cut(s)	491, 564, 583, 1696, 1783, 1913
Hpy99I	CGWCG	1 cut(s)	57
HpyCH4III	ACNGT	9 cut(s)	119, 457, 472, 755, 971, 1778, 1985, 2326, 2974
HpyCH4IV	ACGT	3 cut(s)	1449, 2516, 2621
HpyF10VI	GCNNNNNNNGC	7 cut(s)	218, 509, 1307, 1370, 2269, 2869, 2878
HpyF3I	CTNAG	9 cut(s)	298, 333, 434, 1112, 1916, 2490, 2754, 2913, 3024
HpySE526I	ACGT	3 cut(s)	1449, 2516, 2621
HspAI	GCGC	2 cut(s)	1444, 1817
KspAI	GTTAAC	2 cut(s)	583, 1783
Kzo9I	GATC	7 cut(s)	56, 544, 854, 1138, 1348, 1630, 1650
LguI	GCTCTTC	2 cut(s)	1198, 2233
LmnI	GCTCC	4 cut(s)	100, 1061, 1981, 2782
Lsp1109I	GCAGC	1 cut(s)	2884
MaeI	CTAG	7 cut(s)	425, 578, 1346, 1772, 2339, 2721, 2778
MaeII	ACGT	3 cut(s)	1449, 2516, 2621
MaeIII	GTNAC	5 cut(s)	772, 1045, 1805, 2027, 2099
MalI	GATC	7 cut(s)	58, 546, 856, 1140, 1350, 1632, 1652
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	7 cut(s)	56, 544, 854, 1138, 1348, 1630, 1650
MfeI	CAATTG	1 cut(s)	1830
MflI	RGATCY	3 cut(s)	544, 1138, 1348
MhlI	GDGCHC	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	900
MluNI	TGGCCA	1 cut(s)	900
MlyI	GAGTC	4 cut(s)	424, 841, 1275, 1835
MmeI	TCCRAC	1 cut(s)	1258
Mox20I	TGGCCA	1 cut(s)	900
Mph1103I	ATGCAT	2 cut(s)	2265, 2984
MroXI	GAANNNNTTC	1 cut(s)	1330
MscI	TGGCCA	1 cut(s)	900
Msp20I	TGGCCA	1 cut(s)	900
MspR9I	CCNGG	2 cut(s)	1241, 3006
MunI	CAATTG	1 cut(s)	1830
Mva1269I	GAATGC	1 cut(s)	1373
MvaI	CCWGG	2 cut(s)	1241, 3006
MvnI	CGCG	2 cut(s)	859, 1819
MwoI	GCNNNNNNNGC	7 cut(s)	218, 509, 1307, 1370, 2269, 2869, 2878
NcoI	CCATGG	2 cut(s)	66, 1197
NdeI	CATATG	2 cut(s)	476, 2451
NdeII	GATC	7 cut(s)	56, 544, 854, 1138, 1348, 1630, 1650
NlaIV	GGNNCC	4 cut(s)	220, 1140, 1977, 2812
NmuCI	GTSAC	1 cut(s)	2027
NsiI	ATGCAT	2 cut(s)	2265, 2984
NspI	RCATGY	1 cut(s)	195
NspV	TTCGAA	2 cut(s)	18, 1324
PagI	TCATGA	1 cut(s)	1494
PciI	ACATGT	1 cut(s)	191
PciSI	GCTCTTC	2 cut(s)	1198, 2233
PctI	GAATGC	1 cut(s)	1373
PdmI	GAANNNNTTC	1 cut(s)	1330
PfeI	GAWTC	8 cut(s)	20, 271, 385, 904, 1172, 1418, 2013, 2246
PkrI	GCNGC	4 cut(s)	264, 978, 2852, 2874
PleI	GAGTC	4 cut(s)	423, 840, 1275, 1834
PpsI	GAGTC	4 cut(s)	423, 840, 1275, 1834
Ppu21I	YACGTR	1 cut(s)	2622
PpuMI	RGGWCCY	1 cut(s)	2811
PscI	ACATGT	1 cut(s)	191
PshBI	ATTAAT	1 cut(s)	2007
PsiI	TTATAA	4 cut(s)	780, 941, 1064, 2310
Psp5II	RGGWCCY	1 cut(s)	2811
Psp6I	CCWGG	2 cut(s)	1239, 3004
PspGI	CCWGG	2 cut(s)	1239, 3004
PspN4I	GGNNCC	4 cut(s)	220, 1140, 1977, 2812
PspPI	GGNCC	5 cut(s)	70, 825, 875, 1846, 2811
PspPPI	RGGWCCY	1 cut(s)	2811
PstI	CTGCAG	1 cut(s)	2021
PstNI	CAGNNNCTG	1 cut(s)	2549
PsuI	RGATCY	3 cut(s)	544, 1138, 1348
RsaI	GTAC	5 cut(s)	177, 1264, 1951, 2519, 2971
RsaNI	GTAC	5 cut(s)	176, 1263, 1950, 2518, 2970
SapI	GCTCTTC	2 cut(s)	1198, 2233
SatI	GCNGC	4 cut(s)	263, 977, 2851, 2873
Sau3AI	GATC	7 cut(s)	56, 544, 854, 1138, 1348, 1630, 1650
Sau96I	GGNCC	5 cut(s)	70, 825, 875, 1846, 2811
ScaI	AGTACT	1 cut(s)	2971
SchI	GAGTC	4 cut(s)	424, 841, 1275, 1835
ScrFI	CCNGG	2 cut(s)	1241, 3006
SduI	GDGCHC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	115, 2017
SfuI	TTCGAA	2 cut(s)	18, 1324
SinI	GGWCC	1 cut(s)	2811
SmlI	CTYRAG	2 cut(s)	412, 879
SmoI	CTYRAG	2 cut(s)	412, 879
SnaBI	TACGTA	1 cut(s)	2622
SpeI	ACTAGT	1 cut(s)	577
SsiI	CCGC	7 cut(s)	131, 263, 373, 859, 976, 2759, 2850
SspI	AATATT	3 cut(s)	364, 1462, 2509
SspMI	CTAG	7 cut(s)	425, 578, 1346, 1772, 2339, 2721, 2778
StyD4I	CCNGG	2 cut(s)	1239, 3004
StyI	CCWWGG	2 cut(s)	66, 1197
TaaI	ACNGT	9 cut(s)	119, 457, 472, 755, 971, 1778, 1985, 2326, 2974
TaiI	ACGT	3 cut(s)	1452, 2519, 2624
TaqI	TCGA	4 cut(s)	18, 55, 1324, 3001
TatI	WGTACW	3 cut(s)	1262, 1949, 2969
TauI	GCSGC	3 cut(s)	265, 979, 2853
TfiI	GAWTC	8 cut(s)	20, 271, 385, 904, 1172, 1418, 2013, 2246
TscAI	CASTG	2 cut(s)	2038, 2329
TseFI	GTSAC	1 cut(s)	2027
TseI	GCWGC	1 cut(s)	2872
Tsp45I	GTSAC	1 cut(s)	2027
TspRI	CASTG	2 cut(s)	2038, 2329
VpaK11BI	GGWCC	1 cut(s)	2811
VspI	ATTAAT	1 cut(s)	2007
XapI	RAATTY	5 cut(s)	651, 922, 1525, 2208, 2890
XbaI	TCTAGA	1 cut(s)	1771
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	1330
XspI	CTAG	7 cut(s)	425, 578, 1346, 1772, 2339, 2721, 2778
ZrmI	AGTACT	1 cut(s)	2971
Zsp2I	ATGCAT	2 cut(s)	2265, 2984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.